View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_36 (Length: 436)
Name: NF11980_low_36
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 14 - 420
Target Start/End: Original strand, 35014002 - 35014406
Alignment:
| Q |
14 |
gatgaaattagtattaattatagtgatgaaattgtcacttgactcacttgttcgaaatattaatagaatataacatagatttcggatagtaagnnnnnnn |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35014002 |
gatgaaattagtattaattatagtgatgaaattgtcacttgacccacttgttcgaaatattaatagaatataacatagatttcgaatagtaagaaaaaaa |
35014101 |
T |
|
| Q |
114 |
tataagagagttttaaagtgcgtggtcaaaactattacctttaaagtaaattttcgatggacctccgatgcaatttaatattcaattttgctcctcgaga |
213 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
35014102 |
tataagagagttttgaagtgtgtggtcaaaactattacctttaaagtaaattttcgatggacctccgatgcaacttaatattcaattttgctcctcaaga |
35014201 |
T |
|
| Q |
214 |
tttacacatctttgtgtttgaacatgtgcactcaaagtgtaaacacattggagcttcgcaaactgttatgatacacatgacatccatggaatgagaatga |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35014202 |
tttacacatctttgtgtttgaacatgtgcactcaaagtgtaaacacattggagcttcgcaaactgttatgat--acatgacatccatggaatgagaatga |
35014299 |
T |
|
| Q |
314 |
atattattgcaaatgagaaagttattgagtggttacaagctatttatgctataatctactatgactaatatggaactatttatcctccaaattggagaac |
413 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35014300 |
atattattgcaaatgagaaagttatcgagtggttacaagctatttatgctataatctactatgactaatatggaactatttatcctccaaattggagaac |
35014399 |
T |
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| Q |
414 |
aaccaat |
420 |
Q |
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||||||| |
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| T |
35014400 |
aaccaat |
35014406 |
T |
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