View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_40 (Length: 413)
Name: NF11980_low_40
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 47705565 - 47705183
Alignment:
| Q |
18 |
ttatgcaatgccaacacttctgaagggtttgatcctaaaagagatgtctcaatgcctgaaatgaacctacaaggttacaagttgagctcaccaattccaa |
117 |
Q |
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| T |
47705565 |
ttatgcaatgccaacacttctgaagggtttgatcctaaaagagatgtctcaatgcctgaaatgaacctacaaggttacaagttgagctcaccaattccaa |
47705466 |
T |
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| Q |
118 |
gcaaagacccaaataatcgttctatacttgctttctttgctggaggggaacatggtatgattagaaagacattactagatcaatggaaaggaaaagataa |
217 |
Q |
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| T |
47705465 |
gcaaagaatcaaataatcgttctatacttgctttctttgctggaggggaacatggtatgattagaaagacattactagatcaatggaaaggaaaagataa |
47705366 |
T |
|
| Q |
218 |
agaagtactagtgtatgaatatcttccnnnnnnncttaagtactttaaactcatgggaaaaagcaagttttgcttgtgtccaagtggctatgaagtagct |
317 |
Q |
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| T |
47705365 |
agaagtactagtgtatgaatatcttccaaaaaaacttaagtactttaaactcatgggaaaaagcaagttttgcttgtgtccaagtggctatgaagtagct |
47705266 |
T |
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| Q |
318 |
agccctagacttgtggagtctataaacactggatgtgtccctgtgattgtttcggataactatcaattaccctttagtgatgt |
400 |
Q |
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| T |
47705265 |
agccctagacttgtggagtctataaacactggatgtgtccctgtgattgtttcggataactatcaattaccctttagtgatgt |
47705183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 47728286 - 47728258
Alignment:
| Q |
18 |
ttatgcaatgccaacacttctgaagggtt |
46 |
Q |
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| T |
47728286 |
ttatgcaatgccaacacttctgaagggtt |
47728258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 316
Target Start/End: Original strand, 44629169 - 44629206
Alignment:
| Q |
279 |
agcaagttttgcttgtgtccaagtggctatgaagtagc |
316 |
Q |
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| T |
44629169 |
agcaagttttgtttgtgtccaagtggttatgaagtagc |
44629206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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