View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_41 (Length: 411)
Name: NF11980_low_41
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 44470454 - 44470697
Alignment:
| Q |
17 |
tctccatcattgctaccttctcacatgcaacaccatcatt---ggtcactctccttcatacccaacaagtaaataaattttatattctcatctttatttt |
113 |
Q |
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| T |
44470454 |
tctccatcattgctaccttctcacatgcaacaccatcattattggtcactctccttcatacccaacaagtaaataaattttatattctcatctttatttt |
44470553 |
T |
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| Q |
114 |
tattttgaaatattaatccaaagaagggaataccctttaattcaaaattattaaaaatcatttgaacaacaatatagcgtacacatgaatgtatacgtta |
213 |
Q |
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| T |
44470554 |
tattttgaaatattaatccaaagaagggaataccctttaattcaaaattattaaaaatcatttgaacaacaatatagcgtacacatgaatgtatacatta |
44470653 |
T |
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| Q |
214 |
ttgaatcttaaataaaaggctttatgtacgtattatatatatat |
257 |
Q |
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| T |
44470654 |
ttgaatcttaaataaaaggctttatgtacgtattatatatatat |
44470697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 247 - 406
Target Start/End: Original strand, 44470719 - 44470878
Alignment:
| Q |
247 |
tatatatatatgcatgtttcagattaatgagactgcactatcaagtggtagctgtatttacaagatcatcataacaacaagctgcagttctccaagactt |
346 |
Q |
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| T |
44470719 |
tatatatatatgcatgtttcagattaatgagactgcactatcaagtggtagctgtatttacaagatcatcataacaacaagctgcagttctccaagactt |
44470818 |
T |
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| Q |
347 |
acaacagatgcaatcgatattttaattggagatgctgatggcactcaggttcttctctct |
406 |
Q |
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| T |
44470819 |
acaacagatgcaatcgatattttaattggagatgctgatggcactcaggttcttttctct |
44470878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 76 - 151
Target Start/End: Original strand, 44474568 - 44474643
Alignment:
| Q |
76 |
caacaagtaaataaattttatattctcatctttatttttattttgaaatattaatccaaagaagggaatacccttt |
151 |
Q |
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| T |
44474568 |
caacaagttaatacattttatattctcatctttatttttactttgaaatattaattcaaacaagggaatacccttt |
44474643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 406
Target Start/End: Original strand, 44474747 - 44474904
Alignment:
| Q |
255 |
tatgcatgtttcagattaatgagactgcact------atcaagtggtagctgtatttacaagatcatcataacaacaagctgcagttctccaagacttac |
348 |
Q |
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| T |
44474747 |
tatgcatgtttcagattaatgagactgaacttgttagaggtagtggtagctgcaattacaagatcgacataaagacaagctgcagttctccggaacatac |
44474846 |
T |
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| Q |
349 |
aacagatgcaatcgatattttaattggagatgctgatggcactcaggttcttctctct |
406 |
Q |
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| T |
44474847 |
aacagatacaatcgacattataattggagacgctaatggcaatcaggttgttttctct |
44474904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 44488811 - 44488859
Alignment:
| Q |
17 |
tctccatcattgctaccttctcacatgcaacaccatcattggtcactct |
65 |
Q |
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|||||||||||| | |||||||||||||| ||||| ||||||||||||| |
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| T |
44488811 |
tctccatcattgttgccttctcacatgcagcaccaacattggtcactct |
44488859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 44495102 - 44495149
Alignment:
| Q |
17 |
tctccatcattgctaccttctcacatgcaacaccatcattggtcactc |
64 |
Q |
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| T |
44495102 |
tctccatcatcactgccttctcacatgcaacaccaacattggtcactc |
44495149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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