View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_44 (Length: 396)
Name: NF11980_low_44
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 25 - 269
Target Start/End: Original strand, 31504467 - 31504711
Alignment:
| Q |
25 |
gtgttttatttaaaaactcgtgtaacttacaaaattgagagtaaatgatcggacaaaaactaaaattatgatctttcactacgtaatgagactagtttta |
124 |
Q |
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| T |
31504467 |
gtgttttatttaaaaactcgtgtaacttacaaaattgagagtaaatggtcggacaaaaactgaaattatgatatttaactatgtaatgagacaagtttta |
31504566 |
T |
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| Q |
125 |
gtcctacgaagaagctattaaaaattatgaacatcattttttacacttttaaacatagaatacacaagtccaaaatattcatactaaatttaatttcttt |
224 |
Q |
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|||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31504567 |
gtcctacgaacaaactattaaaaattattaacatcattttttacacttttaaacatagaatacacaagtccataatattcatactaaatttaatttcttt |
31504666 |
T |
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| Q |
225 |
aactaatattccagagacactgattatcatttttcaaaaattatt |
269 |
Q |
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| T |
31504667 |
aactaatactccaagggcaataattatcatttttcaaaaattatt |
31504711 |
T |
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