View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_46 (Length: 393)
Name: NF11980_low_46
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 39196933 - 39196557
Alignment:
| Q |
1 |
actgtaggtaggtagtaaaagacaaacttctaaaatctaatagcccgtccttaaatagaccaaaaagctcataaggaaaagctagcaaccttgcatgatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39196933 |
actgtaggtaggtagtaaaagacaaacttctaaaatctaatagcccgtccttaaatagaccaaaaagctcataaggaaaagctagcaaccttgcatgatt |
39196834 |
T |
|
| Q |
101 |
ccaacataaaagcttaacaaca-aagtagttcttctttccagcatcatggaaggggttgaagaaaaaggccatgcaagtgggaaagaagattacactcaa |
199 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39196833 |
ccaacataaaagcttaacaacagaagtagttcttctttccagcatcatggaaggggttgaagaaaaaggccatgcaagtgggaaagaagattacactcaa |
39196734 |
T |
|
| Q |
200 |
gatggtacagtagacctaaaaggtagacctgttttaagatcaaaaactggacgatggaaagcttgctccttcatagtaggtaaagtgaagcgttttttgg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39196733 |
gatggtacagtagacctaaaaggtagacctgttttaagatcaaaaactggacgatggaaagcttgctccttcatagtaggtaaagtgaagcgttttttgg |
39196634 |
T |
|
| Q |
300 |
cttcgtgcatatttgtatacactatatacactatgggatcgatggaatcacattgtgcctctacaattttggcgaat |
376 |
Q |
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| T |
39196633 |
cttcgtgcatatttgtatatactatatacactatgggatcgatggaatcacattgtgcctctacaattttggcgaat |
39196557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 376
Target Start/End: Complemental strand, 39218491 - 39218140
Alignment:
| Q |
15 |
gtaaaagacaaacttctaaaatctaatagcccgtccttaaatagaccaaaaagctcataaggaaaagctagcaaccttgcatgattccaacataaaagct |
114 |
Q |
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||||||||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||| | ||||||||| |||||||||||||||| ||||||||| |
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| T |
39218491 |
gtaaaagacaaacttctaagatcaaattgcccgtccttaaatataccaaaaagctcataagaataagctagcagccttgcatgattccaagataaaagct |
39218392 |
T |
|
| Q |
115 |
taacaacaaa-gtagttcttctttccagcatcatggaaggggttgaagaaaaaggccatgcaagtgggaaagaagattacactcaagatggtacagtaga |
213 |
Q |
| |
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|||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39218391 |
taacaacacacgtagttcttctttccagcatcatggaagtggttgaagaaaaaggccctgcaaatgggaaagaagattacactcaagatggtacagtaga |
39218292 |
T |
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| Q |
214 |
cctaaaaggtagacctgttttaagatcaaaaactggacgatggaaagcttgctccttcatagtaggtaaagtgaagcgttttttggcttcgtgcatattt |
313 |
Q |
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| T |
39218291 |
cctaaaaggtagacctgttttaagatcgaagactggacgatggaaagcttgctccttcatagtaggtaaag---------ttttggcttcgtgcatattt |
39218201 |
T |
|
| Q |
314 |
gtatacactatatacactatgggatcgatggaatcacattgtgcctctacaattttggcgaat |
376 |
Q |
| |
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| T |
39218200 |
ggatacac--tatacactatgagattggtggaatcacattgtgcctctacatttttggcgaat |
39218140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 376
Target Start/End: Complemental strand, 39225589 - 39225238
Alignment:
| Q |
15 |
gtaaaagacaaacttctaaaatctaatagcccgtccttaaatagaccaaaaagctcataaggaaaagctagcaaccttgcatgattccaacataaaagct |
114 |
Q |
| |
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||||||||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||| | ||||||||| |||||||||||||||| ||||||||| |
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| T |
39225589 |
gtaaaagacaaacttctaagatcaaattgcccgtccttaaatataccaaaaagctcataagaataagctagcagccttgcatgattccaagataaaagct |
39225490 |
T |
|
| Q |
115 |
taacaacaaa-gtagttcttctttccagcatcatggaaggggttgaagaaaaaggccatgcaagtgggaaagaagattacactcaagatggtacagtaga |
213 |
Q |
| |
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|||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39225489 |
taacaacacacgtagttcttctttccagcatcatggaagtggttgaagaaaaaggccctgcaaatgggaaagaagattacactcaagatggtacagtaga |
39225390 |
T |
|
| Q |
214 |
cctaaaaggtagacctgttttaagatcaaaaactggacgatggaaagcttgctccttcatagtaggtaaagtgaagcgttttttggcttcgtgcatattt |
313 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39225389 |
cctaaaaggtagacctgttttaagatcgaagactggacgatggaaagcttgctccttcatagtaggtaaag---------ttttggcttcgtgcatattt |
39225299 |
T |
|
| Q |
314 |
gtatacactatatacactatgggatcgatggaatcacattgtgcctctacaattttggcgaat |
376 |
Q |
| |
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| T |
39225298 |
ggatacac--tatacactatgagattggtggaatcacattgtgcctctacagttttggcgaat |
39225238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 154 - 290
Target Start/End: Complemental strand, 39179534 - 39179398
Alignment:
| Q |
154 |
ggttgaagaaaaaggccatgcaagtgggaaagaagattacactcaagatggtacagtagacctaaaaggtagacctgttttaagatcaaaaactggacga |
253 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||||| || |
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| T |
39179534 |
ggttgaagaaaaaggctcagcaaacgggaaagaagattacactcaggatggaacagtagacctaaaaggtagacccattttaagatcaaagactggaaga |
39179435 |
T |
|
| Q |
254 |
tggaaagcttgctccttcatagtaggtaaagtgaagc |
290 |
Q |
| |
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||||||||||||||||| |||||||||||| |||||| |
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| T |
39179434 |
tggaaagcttgctcctttatagtaggtaaaatgaagc |
39179398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 182 - 281
Target Start/End: Complemental strand, 39248002 - 39247903
Alignment:
| Q |
182 |
aaagaagattacactcaagatggtacagtagacctaaaaggtagacctgttttaagatcaaaaactggacgatggaaagcttgctccttcatagtaggta |
281 |
Q |
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||||||||||| ||| ||||||| ||||| ||||| ||||||||||| |||||||||||||| || ||| |||||| |||||| |||||||||||||||| |
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| T |
39248002 |
aaagaagattatactgaagatgggacagtggaccttaaaggtagaccagttttaagatcaaatacaggaagatggagagcttgttccttcatagtaggta |
39247903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 182 - 281
Target Start/End: Complemental strand, 39300311 - 39300212
Alignment:
| Q |
182 |
aaagaagattacactcaagatggtacagtagacctaaaaggtagacctgttttaagatcaaaaactggacgatggaaagcttgctccttcatagtaggta |
281 |
Q |
| |
|
||||||||||| ||| ||||||| ||||| ||||| ||||||||||| |||||||||||||| || ||| |||||| |||||| |||||||||||||||| |
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|
| T |
39300311 |
aaagaagattatactgaagatgggacagtggaccttaaaggtagaccagttttaagatcaaatacaggaagatggagagcttgttccttcatagtaggta |
39300212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 183 - 289
Target Start/End: Complemental strand, 39241071 - 39240965
Alignment:
| Q |
183 |
aagaagattacactcaagatggtacagtagacctaaaaggtagacctgttttaagatcaaaaactggacgatggaaagcttgctccttcatagtaggtaa |
282 |
Q |
| |
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|||||||||||||||||||||| |||||||| || |||| ||||| |||||||||||||| |||||| |||||||||||| |||||| | |||||||| |
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| T |
39241071 |
aagaagattacactcaagatggaacagtagatttacaaggcagaccagttttaagatcaaagactggaacatggaaagcttgttccttccttgtaggtaa |
39240972 |
T |
|
| Q |
283 |
agtgaag |
289 |
Q |
| |
|
| ||||| |
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|
| T |
39240971 |
attgaag |
39240965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 188 - 283
Target Start/End: Complemental strand, 39258496 - 39258401
Alignment:
| Q |
188 |
gattacactcaagatggtacagtagacctaaaaggtagacctgttttaagatcaaaaactggacgatggaaagcttgctccttcatagtaggtaaa |
283 |
Q |
| |
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|||||||| |||||||| |||||| ||| |||||| ||| |||||||||||||| || ||| |||||||||||||||| || |||||||||||| |
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| T |
39258496 |
gattacacgcaagatggcacagtaagtctacaaggtaaaccggttttaagatcaaagaccggaagatggaaagcttgctcttttatagtaggtaaa |
39258401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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