View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11980_low_49 (Length: 384)

Name: NF11980_low_49
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11980_low_49
NF11980_low_49
[»] chr8 (1 HSPs)
chr8 (19-384)||(42125622-42125982)


Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 384
Target Start/End: Original strand, 42125622 - 42125982
Alignment:
Q  19 aagtttgcaagaagacaagatatatcacttctatctatatcctataatcatgtatatattttagtaatctaggttttaattagttacgcttaaaccannn 118  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||       
T  42125622 aagtttgcaagaagacaagatatatcacttctatctatatc-tataatcatgtatatattt-agtaatctaggttttaattagttccgcttaaaccattt 42125719  T
Q  119 nnnnn-aaggaagttccgcttaaaccatgaattgtatactctatgaatacggcatttttataatataaaaaatacnnnnnnnnnnnnnnnnaacacaaat 217  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |                  |||||||||    
T  42125720 ttttttaaggaagttccgcttaaaccatgaattgtatactctatgaatacggcatttttataatataa----tttttttatttttttatttaacacaaat 42125815  T
Q  218 agaatgtctcatctgggttaagaaaaattaggatgagactggattgtcccatctgtaattatccgaccaactctaatctatattctccgtgataacataa 317  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||    
T  42125816 agaatgtctcatctgagttaagaaaaattaggatgagactggattgtcccatctgtaattatccgatcaattctaatctatattctccgtgatagcataa 42125915  T
Q  318 gtatgtttttattactttatatgttcctcaaatattatcttcattcaaattaacattattttttatt 384  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42125916 gtatatttttattactttatatgttcctcaaatattatcttcattcaaattaacattattttttatt 42125982  T

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