View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11980_low_5 (Length: 700)

Name: NF11980_low_5
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11980_low_5
NF11980_low_5
[»] chr8 (25 HSPs)
chr8 (1-685)||(44140823-44141507)
chr8 (345-456)||(32927864-32927975)
chr8 (286-456)||(13384656-13384819)
chr8 (339-449)||(38868464-38868574)
chr8 (350-455)||(4662906-4663011)
chr8 (339-456)||(37684371-37684488)
chr8 (359-429)||(38537387-38537457)
chr8 (348-431)||(36200159-36200242)
chr8 (350-412)||(41318825-41318887)
chr8 (371-456)||(26100148-26100233)
chr8 (371-449)||(15677824-15677903)
chr8 (373-448)||(35494990-35495065)
chr8 (324-430)||(26668503-26668609)
chr8 (351-424)||(10367973-10368046)
chr8 (261-320)||(10367896-10367955)
chr8 (371-440)||(7244619-7244688)
chr8 (348-456)||(16972066-16972174)
chr8 (371-442)||(32994258-32994329)
chr8 (371-456)||(18355852-18355935)
chr8 (461-531)||(29512900-29512970)
chr8 (356-408)||(1836262-1836315)
chr8 (339-443)||(463128-463232)
chr8 (348-388)||(4950459-4950499)
chr8 (348-456)||(32767362-32767470)
chr8 (336-388)||(35525375-35525427)
[»] chr4 (44 HSPs)
chr4 (1-685)||(50061402-50062085)
chr4 (348-448)||(32818380-32818480)
chr4 (339-449)||(49138772-49138881)
chr4 (348-449)||(26617443-26617544)
chr4 (265-440)||(35064962-35065130)
chr4 (324-456)||(9064182-9064314)
chr4 (350-432)||(55186988-55187070)
chr4 (371-443)||(8604637-8604709)
chr4 (262-322)||(21691349-21691409)
chr4 (348-446)||(30472909-30473007)
chr4 (339-449)||(53913586-53913696)
chr4 (262-456)||(16551853-16552038)
chr4 (371-500)||(21691160-21691299)
chr4 (339-430)||(9134576-9134667)
chr4 (339-506)||(39733582-39733756)
chr4 (339-456)||(39386599-39386716)
chr4 (269-412)||(46344878-46345013)
chr4 (375-456)||(52965856-52965937)
chr4 (350-449)||(41370021-41370118)
chr4 (355-413)||(11271582-11271641)
chr4 (348-405)||(25319022-25319080)
chr4 (350-424)||(30889764-30889838)
chr4 (348-424)||(18597014-18597091)
chr4 (348-445)||(20712827-20712924)
chr4 (261-318)||(33456269-33456326)
chr4 (261-322)||(33843586-33843647)
chr4 (392-457)||(45011893-45011958)
chr4 (261-322)||(49138964-49139025)
chr4 (371-443)||(30357510-30357582)
chr4 (356-388)||(33843661-33843693)
chr4 (348-440)||(43868111-43868203)
chr4 (457-508)||(9134708-9134759)
chr4 (353-424)||(25927288-25927359)
chr4 (343-449)||(31012747-31012854)
chr4 (351-424)||(2206377-2206451)
chr4 (261-424)||(2635058-2635214)
chr4 (348-456)||(22683838-22683947)
chr4 (339-456)||(53713563-53713680)
chr4 (257-298)||(56013913-56013954)
chr4 (261-301)||(29728917-29728957)
chr4 (336-388)||(52061404-52061456)
chr4 (348-411)||(54705437-54705501)
chr4 (255-295)||(54705547-54705587)
chr4 (348-456)||(55927772-55927880)
[»] scaffold0168 (1 HSPs)
scaffold0168 (261-428)||(31721-31881)
[»] chr2 (24 HSPs)
chr2 (342-508)||(33019096-33019272)
chr2 (348-457)||(10644578-10644687)
chr2 (261-431)||(30503104-30503267)
chr2 (261-320)||(33047683-33047742)
chr2 (348-430)||(2002723-2002805)
chr2 (326-456)||(11504064-11504193)
chr2 (348-454)||(31453358-31453464)
chr2 (364-429)||(42740968-42741033)
chr2 (352-456)||(16518758-16518861)
chr2 (343-449)||(22535968-22536074)
chr2 (339-448)||(3352042-3352151)
chr2 (354-456)||(42982523-42982627)
chr2 (349-456)||(33502223-33502320)
chr2 (371-456)||(26032037-26032122)
chr2 (371-435)||(43501123-43501187)
chr2 (348-383)||(1976940-1976975)
chr2 (350-388)||(680347-680385)
chr2 (349-391)||(32777946-32777988)
chr2 (376-449)||(5533040-5533113)
chr2 (261-318)||(7629757-7629814)
chr2 (324-449)||(12037012-12037137)
chr2 (347-424)||(21659693-21659770)
chr2 (348-408)||(37561681-37561742)
chr2 (455-507)||(13912879-13912931)
[»] chr6 (27 HSPs)
chr6 (261-508)||(4910803-4911053)
chr6 (273-448)||(3481946-3482121)
chr6 (255-430)||(5724658-5724826)
chr6 (348-446)||(6654102-6654200)
chr6 (265-456)||(25195368-25195550)
chr6 (358-442)||(7952725-7952809)
chr6 (348-456)||(16540082-16540190)
chr6 (348-456)||(1485148-1485256)
chr6 (371-430)||(6895978-6896037)
chr6 (349-456)||(26280581-26280688)
chr6 (348-422)||(765422-765496)
chr6 (348-429)||(2234490-2234571)
chr6 (452-506)||(4908051-4908105)
chr6 (353-429)||(852512-852588)
chr6 (348-424)||(10400729-10400805)
chr6 (350-381)||(24974192-24974223)
chr6 (350-456)||(434239-434345)
chr6 (371-449)||(25195848-25195926)
chr6 (350-456)||(34620863-34620969)
chr6 (350-456)||(34748300-34748406)
chr6 (350-388)||(35098244-35098282)
chr6 (352-408)||(10564974-10565031)
chr6 (396-449)||(17225875-17225928)
chr6 (348-399)||(2234272-2234324)
chr6 (372-400)||(14993077-14993105)
chr6 (390-446)||(19601457-19601513)
chr6 (261-321)||(31710512-31710572)
[»] chr5 (29 HSPs)
chr5 (350-508)||(42858085-42858253)
chr5 (353-444)||(14299310-14299401)
chr5 (356-457)||(9818717-9818819)
chr5 (265-430)||(11647981-11648139)
chr5 (371-456)||(6951307-6951392)
chr5 (366-455)||(38845436-38845525)
chr5 (371-506)||(18851024-18851169)
chr5 (339-457)||(28110439-28110557)
chr5 (261-318)||(38845644-38845701)
chr5 (350-456)||(42439619-42439726)
chr5 (348-430)||(34250379-34250461)
chr5 (339-449)||(36290001-36290111)
chr5 (353-449)||(13171769-13171866)
chr5 (339-400)||(27374349-27374410)
chr5 (348-429)||(36639912-36639993)
chr5 (371-447)||(39097244-39097320)
chr5 (349-401)||(43268467-43268519)
chr5 (353-456)||(31906239-31906342)
chr5 (261-322)||(18851211-18851272)
chr5 (261-322)||(22226365-22226426)
chr5 (371-449)||(18637282-18637358)
chr5 (348-424)||(1105414-1105492)
chr5 (336-449)||(5468736-5468850)
chr5 (261-318)||(3043137-3043194)
chr5 (356-385)||(22572511-22572540)
chr5 (348-413)||(32980519-32980583)
chr5 (353-408)||(3970450-3970506)
chr5 (376-424)||(8121547-8121595)
chr5 (372-444)||(22226250-22226322)
[»] chr1 (33 HSPs)
chr1 (374-508)||(30557505-30557647)
chr1 (261-456)||(28083890-28084078)
chr1 (348-456)||(6021779-6021887)
chr1 (380-456)||(7524120-7524196)
chr1 (349-456)||(38797631-38797738)
chr1 (350-456)||(3016140-3016245)
chr1 (375-456)||(11049252-11049333)
chr1 (347-449)||(1514317-1514419)
chr1 (349-424)||(31362239-31362310)
chr1 (262-510)||(2099625-2099873)
chr1 (371-456)||(7790644-7790729)
chr1 (339-456)||(47321909-47322025)
chr1 (360-424)||(48549046-48549110)
chr1 (339-441)||(34387710-34387812)
chr1 (353-467)||(50571264-50571377)
chr1 (348-449)||(3416055-3416156)
chr1 (257-435)||(36780139-36780311)
chr1 (374-456)||(30850401-30850483)
chr1 (336-444)||(34721854-34721959)
chr1 (348-446)||(50569655-50569753)
chr1 (348-430)||(51500862-51500939)
chr1 (386-507)||(4887718-4887837)
chr1 (371-448)||(28287346-28287423)
chr1 (353-429)||(10324967-10325043)
chr1 (339-430)||(3909827-3909918)
chr1 (256-318)||(15478134-15478196)
chr1 (358-440)||(33733954-33734036)
chr1 (349-401)||(5268194-5268247)
chr1 (261-318)||(8130853-8130910)
chr1 (353-442)||(15986237-15986326)
chr1 (395-456)||(34915088-34915149)
chr1 (261-322)||(45660878-45660938)
chr1 (348-397)||(47053385-47053438)
[»] chr7 (20 HSPs)
chr7 (353-456)||(40491558-40491661)
chr7 (348-455)||(41386818-41386925)
chr7 (353-430)||(15903558-15903635)
chr7 (336-446)||(35772221-35772331)
chr7 (348-429)||(27571837-27571918)
chr7 (336-428)||(22195827-22195919)
chr7 (350-429)||(28725081-28725160)
chr7 (348-429)||(5489875-5489956)
chr7 (348-405)||(36270955-36271012)
chr7 (348-408)||(40422767-40422828)
chr7 (348-424)||(44856843-44856917)
chr7 (349-429)||(30182325-30182404)
chr7 (261-318)||(46325570-46325627)
chr7 (353-457)||(25156176-25156284)
chr7 (350-388)||(45004997-45005035)
chr7 (371-412)||(17111855-17111896)
chr7 (371-456)||(38123668-38123753)
chr7 (353-429)||(1410942-1411018)
chr7 (474-514)||(22198194-22198234)
chr7 (474-514)||(22239587-22239627)
[»] chr3 (25 HSPs)
chr3 (336-446)||(40736550-40736659)
chr3 (353-430)||(25359602-25359679)
chr3 (339-427)||(54596784-54596872)
chr3 (259-322)||(52141374-52141437)
chr3 (348-449)||(32523349-32523451)
chr3 (261-318)||(1290676-1290733)
chr3 (371-456)||(52364049-52364134)
chr3 (348-412)||(7717367-7717431)
chr3 (348-457)||(35058336-35058446)
chr3 (353-429)||(37335063-37335139)
chr3 (349-449)||(44771670-44771770)
chr3 (348-415)||(1441424-1441491)
chr3 (351-446)||(35264423-35264518)
chr3 (261-318)||(3845245-3845302)
chr3 (261-318)||(52363960-52364017)
chr3 (348-456)||(36302158-36302266)
chr3 (349-388)||(30301069-30301108)
chr3 (371-426)||(35058065-35058120)
chr3 (348-407)||(41115413-41115472)
chr3 (348-379)||(48410891-48410922)
chr3 (394-456)||(31708241-31708303)
chr3 (358-456)||(40147852-40147950)
chr3 (348-446)||(47356257-47356355)
chr3 (348-388)||(38022410-38022451)
chr3 (352-429)||(44958635-44958712)
[»] scaffold0314 (1 HSPs)
scaffold0314 (262-318)||(17322-17378)
[»] scaffold0197 (1 HSPs)
scaffold0197 (261-322)||(31544-31605)
[»] scaffold0024 (1 HSPs)
scaffold0024 (352-424)||(23627-23699)


Alignment Details
Target: chr8 (Bit Score: 633; Significance: 0; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 1 - 685
Target Start/End: Complemental strand, 44141507 - 44140823
Alignment:
Q  1 aatcaagaaaggccaagctaaatgagctcagattctatcgtttgaaggcaaaacaaaagatgtattctcctaatccagaagttagaattcgctataagct 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44141507 aatcaagaaaggccaagctaaatgagctcagattctttcgtttgaaggcaaaacaaaagatgtattctcctaatccagaagttaggattcgctataagct 44141408  T
Q  101 tcaaaaggttggatttctttgtaatactaatttttaagttcaaagctttatttcctgtagcgattgcttgtactttgcttcagctgcttggttgttgtta 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44141407 tgaaaaggttggatttctttgtaatactaatttttaagttcaaagctttatttcctgtagcgattgcttgtactttgcttcagctgcttggttgttgtta 44141308  T
Q  201 ctgatgatttacttttaggacaattttacccgtttgcttgtattcttgtacgactttgtatatgtttggttccacttctagaggaaccaaaattgatttt 300  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44141307 ctgatgatttacttataggacaattttacccgttagcttgtattcttgtacgactttgtatatgtttggttccacttctagaggaaccaaaattgattct 44141208  T
Q  301 ggaggtctagaattgattctgagttctaacacgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgta 400  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44141207 ggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgta 44141108  T
Q  401 ccttttgattctagagttgattttcacacataattttatagttcaactcgcttttatccaaacacaattcacctttagtcagaatcacttttacccaaaa 500  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  44141107 gtttttgattctagagttgattttcacacataattttatagttcaactcgcttttatccaaacacaattcacttttagtcagaatcacttttaaccaaaa 44141008  T
Q  501 tcaattctccccactaaactaccaaacacacacatgtaattgtatattctctagttttttcatgaatagcaaatgttagtatcagggtcgggatcgaaaa 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  44141007 tcaattctccccactaaactaccaaacacacacatgtaattgtatattctctagttttttcatgaatagcaaatgttagcatcagggtcggtatcgaaaa 44140908  T
Q  601 ctctccctccttatcggtccattccttaactctcccatcccaaccttacattttctagttctgtaataattgtttgagtattttt 685  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44140907 ctctccctccttatcggtccattccttaactctcccatcccaaccttacattttctagttctgtaataattgtttgagtattttt 44140823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 345 - 456
Target Start/End: Original strand, 32927864 - 32927975
Alignment:
Q  345 tccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttc 444  Q
    ||||||||||||||||||||||| | | |||||||||||||||| ||||||||||| ||||||||| |||| || ||||| ||||| || ||||||||||    
T  32927864 tccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaattcatttttacacacaaatttatagttc 32927963  T
Q  445 aactcgctttta 456  Q
    ||||| ||||||    
T  32927964 aactcactttta 32927975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 286 - 456
Target Start/End: Complemental strand, 13384819 - 13384656
Alignment:
Q  286 accaaaattgattttggaggtctagaattgattctgagttctaacacgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttg 385  Q
    |||| |||||||||||||||| |||||||||||||||       || || || |||||||| ||| |||||  || |  ||||||||||||||||| |||    
T  13384819 accataattgattttggaggtgtagaattgattctga-------catgtttggttgttgtcgagtcgaatttgttctttctccaaaattgattctatttg 13384727  T
Q  386 aagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 456  Q
    ||| ||  ||||||| |||||||||||||| |||||||||||||| || ||||||||||||||| ||||||    
T  13384726 aagctaaaatttgtagcttttgattctagaattgattttcacacacaaatttatagttcaactcactttta 13384656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 339 - 449
Target Start/End: Original strand, 38868464 - 38868574
Alignment:
Q  339 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 438  Q
    |||||||| |||| |||||||  |||||| |||||||||||||||||||| || |||||||| |||||| ||||| | |||||||||||||| || ||||    
T  38868464 ttgttgtcgagtaaaattgatgatgcctctaaaattgattctacttgaagctaagatttgtagcttttggttctataattgattttcacacacaaattta 38868563  T
Q  439 tagttcaactc 449  Q
    |||||||||||    
T  38868564 tagttcaactc 38868574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 350 - 455
Target Start/End: Complemental strand, 4663011 - 4662906
Alignment:
Q  350 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 449  Q
    ||||||||||||||| |||  |||| ||||||||||||| ||||||||||| |||||| ||||||| |||||||| ||||| || | |||||||||||||    
T  4663011 tagaattgattttgcatccggaatttattctacttgaagctaggatttgtagcttttgtttctagaattgatttttacacacaaatgtatagttcaactc 4662912  T
Q  450 gctttt 455  Q
    ||||||    
T  4662911 gctttt 4662906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 339 - 456
Target Start/End: Original strand, 37684371 - 37684488
Alignment:
Q  339 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 438  Q
    |||||||  |||||||||||||||| ||||| |||||||||||||||||||||||||||||  |||||||||||| | |||||||| |  || || ||||    
T  37684371 ttgttgtggagtagaattgattttgtctccagaattgattctacttgaagttaggatttgtggcttttgattctaaaattgattttaatgcaaaaattta 37684470  T
Q  439 tagttcaactcgctttta 456  Q
    || |||||||| ||||||    
T  37684471 taattcaactcactttta 37684488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 359 - 429
Target Start/End: Complemental strand, 38537457 - 38537387
Alignment:
Q  359 ttttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 429  Q
    ||||||||||||||||| |||||||||||| ||| |  |||||||| ||||||||||||||||||||||||    
T  38537457 ttttgcctccaaaattgtttctacttgaagctagaaactgtaccttctgattctagagttgattttcacac 38537387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 348 - 431
Target Start/End: Complemental strand, 36200242 - 36200159
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacat 431  Q
    |||||||||| || || ||||| ||||||||| ||||||||||| |||||||   ||||||||||||| |||||||||||||||    
T  36200242 agtagaattgtttatgtctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacat 36200159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 350 - 412
Target Start/End: Complemental strand, 41318887 - 41318825
Alignment:
Q  350 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattct 412  Q
    ||||||| |||||||||  |||||||||||||||||||||||| |||||||| ||||||||||    
T  41318887 tagaatttattttgcctttaaaattgattctacttgaagttagaatttgtacattttgattct 41318825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 371 - 456
Target Start/End: Complemental strand, 26100233 - 26100148
Alignment:
Q  371 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 456  Q
    ||||| ||||| |||||| ||||||||||| |||||||||||| | |||||||| ||||| || ||||| ||||||||| ||||||    
T  26100233 aattggttctatttgaagctaggatttgtagcttttgattctataattgatttttacacacaaatttatggttcaactcactttta 26100148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 371 - 449
Target Start/End: Complemental strand, 15677903 - 15677824
Alignment:
Q  371 aattgattctacttgaagttaggatttgtaccttttgattctagagttga-ttttcacacataattttatagttcaactc 449  Q
    |||||||||||||||||| |||||||| || ||||||||| |||| |||| |||| ||||| || |||||||||||||||    
T  15677903 aattgattctacttgaagctaggatttatagcttttgattatagaattgattttttacacacaaatttatagttcaactc 15677824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 373 - 448
Target Start/End: Original strand, 35494990 - 35495065
Alignment:
Q  373 ttgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 448  Q
    |||||||||| ||||| ||||||||||| |||||||||||||| ||| |||| ||||| || | ||||||||||||    
T  35494990 ttgattctacatgaagctaggatttgtagcttttgattctagaattgttttttacacacaaatctatagttcaact 35495065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 324 - 430
Target Start/End: Original strand, 26668503 - 26668609
Alignment:
Q  324 ttctaacacgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 423  Q
    |||||||| || ||||| ||||| ||||||||||||| |||||||| |||||||||||||| ||  ||  |||||||  |||| |||||| | ||||||     
T  26668503 ttctaacatgtttgattcttgtcgagtagaattgattctgcctccataattgattctacttaaaactacaatttgtagttttttattctataattgattc 26668602  T
Q  424 tcacaca 430  Q
    |||||||    
T  26668603 tcacaca 26668609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 351 - 424
Target Start/End: Original strand, 10367973 - 10368046
Alignment:
Q  351 agaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 424  Q
    ||||||||||| ||||||| ||||| |||||||||| | ||||||||| | |||||||||||||| || |||||    
T  10367973 agaattgatttcgcctccacaattggttctacttgaggctaggatttgcagcttttgattctagaattcatttt 10368046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 261 - 320
Target Start/End: Original strand, 10367896 - 10367955
Alignment:
Q  261 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattct 320  Q
    |||||||||||| |||||||||||  |||||||||||| ||||| | |||||||||||||    
T  10367896 tatgtttggttctacttctagaggggccaaaattgattatggagatatagaattgattct 10367955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 440
Target Start/End: Complemental strand, 7244688 - 7244619
Alignment:
Q  371 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttata 440  Q
    |||||||||||||||||  || ||| ||||  ||||||||||||| ||||||||||| || |||||||||    
T  7244688 aattgattctacttgaaactaagatatgtagtttttgattctagaattgattttcacgcacaattttata 7244619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 348 - 456
Target Start/End: Complemental strand, 16972174 - 16972066
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 447  Q
    ||||||||||||||||||| || | |||||| || |||||| ||| |||||||  |||| ||| |||| |||||||| | ||| || ||||| ||||||     
T  16972174 agtagaattgattttgccttcagagttgattgtatttgaagctagaatttgtagtttttaattttagaattgatttttaaacacaaatttattgttcaaa 16972075  T
Q  448 tcgctttta 456  Q
    || ||||||    
T  16972074 tcactttta 16972066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 442
Target Start/End: Complemental strand, 32994329 - 32994258
Alignment:
Q  371 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 442  Q
    |||||||||||||||||| || ||||| || ||||||| |||||| |||||||| | ||| || ||||||||    
T  32994329 aattgattctacttgaagctatgatttctagcttttgagtctagaattgatttttatacacaaatttatagt 32994258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 371 - 456
Target Start/End: Complemental strand, 18355935 - 18355852
Alignment:
Q  371 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 456  Q
    ||||||||||  |||||| ||||||||||  |||||||||||| | |||||||| ||||  || |||| |||||||||| ||||||    
T  18355935 aattgattctgattgaagctaggatttgtgtcttttgattctaaaattgatttttacac--aaatttaaagttcaactccctttta 18355852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 461 - 531
Target Start/End: Original strand, 29512900 - 29512970
Alignment:
Q  461 aacacaattcacctttagtcagaatcacttttacccaaaatcaattctccccactaaactaccaaacacac 531  Q
    ||||||| |||  |||||||| ||||||||||| |||||||||||||||| |||   || |||||||||||    
T  29512900 aacacaaatcagttttagtcaaaatcacttttaaccaaaatcaattctccacaccgcacaaccaaacacac 29512970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 1836315 - 1836262
Alignment:
Q  356 tgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttga 408  Q
    |||||||||||| |||||||||||| |||||||| |||||| |||| |||||||    
T  1836315 tgattttgcctctaaaattgattctaacttgaagctaggatgtgtagcttttga 1836262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 339 - 443
Target Start/End: Complemental strand, 463232 - 463128
Alignment:
Q  339 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 438  Q
    |||||||| ||||||||||||||||  |  | |||| |||||| |||||  || ||||||||  || |||||||||| || ||||||||| | || ||||    
T  463232 ttgttgtctagtagaattgattttgtttttagaattaattctatttgaaactaagatttgtagtttatgattctagaatttattttcacaaagaaattta 463133  T
Q  439 tagtt 443  Q
    |||||    
T  463132 tagtt 463128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 348 - 388
Target Start/End: Original strand, 4950459 - 4950499
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaag 388  Q
    |||||||||||||||||||| ||||||||||  ||||||||    
T  4950459 agtagaattgattttgcctcaaaaattgattagacttgaag 4950499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 348 - 456
Target Start/End: Original strand, 32767362 - 32767470
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 447  Q
    |||||||||||| || ||| |||| |||||| | ||||||| || ||||  || |||||||||| |||  ||| ||| |||| ||| ||||| |||||||    
T  32767362 agtagaattgatattcccttcaaagttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaac 32767461  T
Q  448 tcgctttta 456  Q
    || ||||||    
T  32767462 tcactttta 32767470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 336 - 388
Target Start/End: Original strand, 35525375 - 35525427
Alignment:
Q  336 tgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaag 388  Q
    ||||||||||| ||||||||||||| | || ||| |||||||| |||||||||    
T  35525375 tgattgttgtcgagtagaattgattctaccaccagaattgattgtacttgaag 35525427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 633; Significance: 0; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 1 - 685
Target Start/End: Complemental strand, 50062085 - 50061402
Alignment:
Q  1 aatcaagaaaggccaagctaaatgagctcagattctatcgtttgaaggcaaaacaaaagatgtattctcctaatccagaagttagaattcgctataagct 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  50062085 aatcaagaaaggccaagctaaatgagctcagattctttcgtttgaaggcaaaacaaaagatgtattctcctaatccagaagttaggattcgctataagct 50061986  T
Q  101 tcaaaaggttggatttctttgtaatactaatttttaagttcaaagctttatttcctgtagcgattgcttgtactttgcttcagctgcttggttgttgtta 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50061985 tgaaaaggttggatttctttgtaatactaatttttaagttcaaagctttatttcctgtagcgattgcttgtactttgcttcagctgcttggttgttgtta 50061886  T
Q  201 ctgatgatttacttttaggacaattttacccgtttgcttgtattcttgtacgactttgtatatgtttggttccacttctagaggaaccaaaattgatttt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  50061885 ctgatgatttacttttaggacaattttacccgtttgcttgtattcttgtacgactttgtatatgtttggttccacttctagaggaaccaaaattgattct 50061786  T
Q  301 ggaggtctagaattgattctgagttctaacacgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgta 400  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50061785 ggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgta 50061686  T
Q  401 ccttttgattctagagttgattttcacacataattttatagttcaactcgcttttatccaaacacaattcacctttagtcagaatcacttttacccaaaa 500  Q
      ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  50061685 gtttttgattctagagttgattttcacacataattttatggttcaactcgcttttatccaaacacaattca-ctttagtcagaatcacttttaaccaaaa 50061587  T
Q  501 tcaattctccccactaaactaccaaacacacacatgtaattgtatattctctagttttttcatgaatagcaaatgttagtatcagggtcgggatcgaaaa 600  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  50061586 tcaattctccccactgaactaccaaacacacacatgtaattgtatattctctagttttttcatgaatagcaaatgttagtttcagggtcgggatcgaaaa 50061487  T
Q  601 ctctccctccttatcggtccattccttaactctcccatcccaaccttacattttctagttctgtaataattgtttgagtattttt 685  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50061486 ctctccctccttatcggtccattccttaactctcccatcccaaccttacattttctagttctgtaataattgtttgagtattttt 50061402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 348 - 448
Target Start/End: Complemental strand, 32818480 - 32818380
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 447  Q
    |||||||||||||||||||||| ||||||||||| |||||| ||| ||||||| |||||||||||||| ||||||||  |||| || |||||||||||||    
T  32818480 agtagaattgattttgcctccagaattgattctatttgaagctagaatttgtagcttttgattctagaattgatttttgcacacaaatttatagttcaac 32818381  T
Q  448 t 448  Q
    |    
T  32818380 t 32818380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 339 - 449
Target Start/End: Complemental strand, 49138881 - 49138772
Alignment:
Q  339 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 438  Q
    ||||| || |||| ||||||||||||||||||| || ||||||||||||| ||||||||||| |||||||||||| | |||||||| | ||| ||  |||    
T  49138881 ttgttttcaagtaaaattgattttgcctccaaactt-attctacttgaagctaggatttgtaacttttgattctaaaattgatttttatacacaagctta 49138783  T
Q  439 tagttcaactc 449  Q
    |||||||||||    
T  49138782 tagttcaactc 49138772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 348 - 449
Target Start/End: Original strand, 26617443 - 26617544
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 447  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||| || |||| ||||||||| || | |||||||| | | |||| |||||| ||||||    
T  26617443 agtagaattgattttgcctccaaaaatgattctacttgaagctagaatctgtagcttttgattataaaattgatttttatagataaatttataattcaac 26617542  T
Q  448 tc 449  Q
    ||    
T  26617543 tc 26617544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 265 - 440
Target Start/End: Original strand, 35064962 - 35065130
Alignment:
Q  265 tttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacacgtctgattgttgtccagtagaattgattttgc 364  Q
    ||||||||||||||| ||||   ||||||||||| ||||||| ||||||||||| |||       ||  | || ||| | || |||||||||||||||||    
T  35064962 tttggttccacttctcgaggggtcaaaattgattatggaggtgtagaattgattatga-------catttttggttgctttcgagtagaattgattttgc 35065054  T
Q  365 ctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttata 440  Q
    ||| | |||||||| ||||||||| ||| ||||||  |||||||||||||| |||||||| ||||| || ||||||    
T  35065055 ctcaataattgattttacttgaagctagtatttgtgacttttgattctagaattgatttttacacacaaatttata 35065130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 324 - 456
Target Start/End: Original strand, 9064182 - 9064314
Alignment:
Q  324 ttctaacacgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 423  Q
    |||||||| || || |||||||| | ||||||| | |||||| ||| |||||||||||||||||  ||| |||||||  ||||||||||||| |||||||    
T  9064182 ttctaacatgtttggttgttgtcgaatagaattaaatttgccaccataattgattctacttgaaactagaatttgtagtttttgattctagaattgattt 9064281  T
Q  424 tcacacataattttatagttcaactcgctttta 456  Q
    ||||||  || ||||  ||||||||| ||||||    
T  9064282 tcacactcaagtttacggttcaactcactttta 9064314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 350 - 432
Target Start/End: Complemental strand, 55187070 - 55186988
Alignment:
Q  350 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacata 432  Q
    ||||||| ||| | ||| || |||||||||||||||||||||||||||||| ||||| ||| |||| ||||||||||||||||    
T  55187070 tagaattaattctaccttcagaattgattctacttgaagttaggatttgtaacttttaattatagaattgattttcacacata 55186988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 371 - 443
Target Start/End: Complemental strand, 8604709 - 8604637
Alignment:
Q  371 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagtt 443  Q
    |||||||||||||||||| || |||||||| |||| ||||||||| |||||||||||||| || |||||||||    
T  8604709 aattgattctacttgaagctaagatttgtagctttcgattctagaattgattttcacacacaaatttatagtt 8604637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 262 - 322
Target Start/End: Complemental strand, 21691409 - 21691349
Alignment:
Q  262 atgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctga 322  Q
    ||||||||||||||||||||||| |||| |||||||| ||||||| |||||||||||||||    
T  21691409 atgtttggttccacttctagagggaccagaattgattctggaggtgtagaattgattctga 21691349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 348 - 446
Target Start/End: Original strand, 30472909 - 30473007
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 446  Q
    ||||||||| |||||  || ||||||||||| ||||| ||||||| |||||||  |||||||| |||| |||||||||||| |||  ||||||||||||    
T  30472909 agtagaattaattttatcttcaaaattgattttacttcaagttagaatttgtagtttttgattttagaattgattttcacatatatatttatagttcaa 30473007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 339 - 449
Target Start/End: Complemental strand, 53913696 - 53913586
Alignment:
Q  339 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 438  Q
    |||||||| |||||||||||||||||||  | |||||||| ||||| ||| || ||||| |   || |||||||| | ||||||||||||||||| ||||    
T  53913696 ttgttgtcgagtagaattgattttgcctttataattgattttacttaaagatatgatttatcatttgtgattctataattgattttcacacataaattta 53913597  T
Q  439 tagttcaactc 449  Q
    ||||| |||||    
T  53913596 tagttaaactc 53913586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 262 - 456
Target Start/End: Original strand, 16551853 - 16552038
Alignment:
Q  262 atgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacacgtctgattgttgtccagtagaattgattt 361  Q
    ||||||||||||||||  ||||  | ||||||||||||| ||||| |||||||||||||||       || || || ||| |||| | ||||  |||||     
T  16551853 atgtttggttccactttcagagagatcaaaattgattttagaggtgtagaattgattctga-------catgtatggttgctgtcgaatagagctgattc 16551945  T
Q  362 tgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 456  Q
    |||||| |  || |||||| ||||||| |||||||||||  ||||  ||||||| |||||||||||||  || ||||||||||||||| ||||||    
T  16551946 tgcctctaggatggattctccttgaagctaggatttgtagtttttagttctagaattgattttcacac--aaatttatagttcaactcactttta 16552038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 371 - 500
Target Start/End: Complemental strand, 21691299 - 21691160
Alignment:
Q  371 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgcttt----------tatcca 460  Q
    ||||||||| |||||||  || |||||||| |||||| || |||| |||||||||||||| || ||||||||||||| | ||||          ||||||    
T  21691299 aattgattcaacttgaaactaagatttgtagcttttggttgtagaattgattttcacacacaaatttatagttcaacacacttttacatgaatatatcca 21691200  T
Q  461 aacacaattcacctttagtcagaatcacttttacccaaaa 500  Q
    ||||||| |||| | |||||||||||||||||| ||||||    
T  21691199 aacacaaatcacttgtagtcagaatcacttttaaccaaaa 21691160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 339 - 430
Target Start/End: Original strand, 9134576 - 9134667
Alignment:
Q  339 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 430  Q
    ||||| || ||| ||||||||||| | |||| ||||||| |||||||||| ||  ||||||| ||||||||| |||| ||||||||||||||    
T  9134576 ttgttatcgagtggaattgattttacttccagaattgatcctacttgaagctaaaatttgtagcttttgattttagaattgattttcacaca 9134667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 339 - 506
Target Start/End: Complemental strand, 39733756 - 39733582
Alignment:
Q  339 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 438  Q
    ||||| || |||| |||| ||| |||||||| ||||||||||||||| |||||  ||||||| ||||||||| |||| |||||| ||||||| |  ||||    
T  39733756 ttgttatcaagtataatttattctgcctccataattgattctacttg-agttacaatttgtagcttttgattgtagaattgattatcacacaca--ttta 39733660  T
Q  439 tagttcaactcgcttt----------tatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaatt 506  Q
     ||||||||||  |||          ||||||||||||| |||| |||| ||||||| ||||||| ||||||||||||    
T  39733659 aagttcaactccttttttcataaatgtatccaaacacaaatcacttttaatcagaattacttttaaccaaaatcaatt 39733582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 339 - 456
Target Start/End: Original strand, 39386599 - 39386716
Alignment:
Q  339 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 438  Q
    |||||| | ||||||||||||| || ||| |||||||||||||||| ||| ||  |||| || | ||| |||||| | |||||||||||||| |  ||||    
T  39386599 ttgttgacaagtagaattgattctgtctctaaaattgattctacttaaagctaaaatttataacatttaattctataattgattttcacacacatattta 39386698  T
Q  439 tagttcaactcgctttta 456  Q
     |||||||||| ||||||    
T  39386699 aagttcaactcactttta 39386716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 269 - 412
Target Start/End: Complemental strand, 46345013 - 46344878
Alignment:
Q  269 gttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacacgtctgattgttgtccagtagaattgattttgcctcc 368  Q
    ||||||||||||||||  |||||||||||| ||||||| || |||| |||||||       || || || ||| | || |||| ||||||||||||||||    
T  46345013 gttccacttctagagggcccaaaattgattatggaggtgtataattaattctga-------catgtttggttgctttcaagtataattgattttgcctcc 46344921  T
Q  369 aaaattgattctacttgaagttaggatttgtaccttttgattct 412  Q
    | |||| ||||||||||||||||| ||||  | |||||||||||    
T  46344920 ataatt-attctacttgaagttagaatttccagcttttgattct 46344878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 375 - 456
Target Start/End: Complemental strand, 52965937 - 52965856
Alignment:
Q  375 gattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 456  Q
    |||||||||||||||||  |||| || |||||||||||| | |||||| | |||||||| |||||| |||||||| ||||||    
T  52965937 gattctacttgaagttactatttatagcttttgattctaaaattgattctaacacataaatttataattcaactcactttta 52965856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 350 - 449
Target Start/End: Complemental strand, 41370118 - 41370021
Alignment:
Q  350 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 449  Q
    |||||||||||||  ||| | | ||||||||||||||||||||||||| ||  |||| |||||||| ||||||||   || ||| |||||||||||||||    
T  41370118 tagaattgattttaactctagagttgattctacttgaagttaggatttatagttttttattctagacttgatttt--gacgtaaatttatagttcaactc 41370021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 355 - 413
Target Start/End: Complemental strand, 11271641 - 11271582
Alignment:
Q  355 ttgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttgattcta 413  Q
    ||||||||||||||| |||||||||| |||||||| ||||||||||| ||||||| ||||    
T  11271641 ttgattttgcctccagaattgattctaacttgaagctaggatttgtagcttttgagtcta 11271582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 348 - 405
Target Start/End: Original strand, 25319022 - 25319080
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttt 405  Q
    |||||||||||||||| ||||| |||||||||| |||||||| ||||||||||| ||||    
T  25319022 agtagaattgattttgtctccagaattgattctaacttgaaggtaggatttgtagcttt 25319080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 350 - 424
Target Start/End: Original strand, 30889764 - 30889838
Alignment:
Q  350 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 424  Q
    |||||||||||||| ||| | ||||||||||||||| | ||| ||||||||  |||||||| |||| ||||||||    
T  30889764 tagaattgattttgtctctagaattgattctacttgcaattaagatttgtaaattttgattgtagaattgatttt 30889838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 348 - 424
Target Start/End: Original strand, 18597014 - 18597091
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttgattctagagttgatttt 424  Q
    |||| |||||||||| |||||| |||||||||| |||||||| ||  ||||| |||||||||||||| | ||||||||    
T  18597014 agtaaaattgattttacctccagaattgattctaacttgaagctataatttgaaccttttgattctataattgatttt 18597091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 348 - 445
Target Start/End: Complemental strand, 20712924 - 20712827
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttca 445  Q
    |||| ||||||||||||||||  ||  |||||||||||||| ||  |||||||  |||| |||  ||| |||||||||||||| |||||| |||||||    
T  20712924 agtaaaattgattttgcctcccgaaacgattctacttgaagctaaaatttgtagttttttattgaagaattgattttcacacacaattttgtagttca 20712827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 33456269 - 33456326
Alignment:
Q  261 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 318  Q
    |||||||||||||||||||||||| || | ||||||||||| | || |||||||||||    
T  33456269 tatgtttggttccacttctagagggactataattgattttgaatgtgtagaattgatt 33456326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 261 - 322
Target Start/End: Original strand, 33843586 - 33843647
Alignment:
Q  261 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctga 322  Q
    ||||||||||| ||||||||||||  |||||||||||| | ||||| ||||||| |||||||    
T  33843586 tatgtttggtttcacttctagagggtccaaaattgattctagaggtgtagaattaattctga 33843647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 457
Target Start/End: Original strand, 45011893 - 45011958
Alignment:
Q  392 ggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgcttttat 457  Q
    ||||||||| |||||||||||||| |||||||||||||| || |||||| ||  |||| |||||||    
T  45011893 ggatttgtagcttttgattctagaattgattttcacacacaaatttataattttactcacttttat 45011958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 261 - 322
Target Start/End: Complemental strand, 49139025 - 49138964
Alignment:
Q  261 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctga 322  Q
    |||||||||||||||||||| ||   |||||||||||| | ||||| |||||||||||||||    
T  49139025 tatgtttggttccacttctaaagtggccaaaattgattctagaggtgtagaattgattctga 49138964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 371 - 443
Target Start/End: Original strand, 30357510 - 30357582
Alignment:
Q  371 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagtt 443  Q
    |||||||||||||||||| |  |||||||| ||||||||| || | |||||||| ||||| || |||||||||    
T  30357510 aattgattctacttgaagctgtgatttgtagcttttgattatataattgatttttacacacaaatttatagtt 30357582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 356 - 388
Target Start/End: Original strand, 33843661 - 33843693
Alignment:
Q  356 tgattttgcctccaaaattgattctacttgaag 388  Q
    |||||||||||||||||||||||||||||||||    
T  33843661 tgattttgcctccaaaattgattctacttgaag 33843693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 348 - 440
Target Start/End: Original strand, 43868111 - 43868203
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttata 440  Q
    ||||||||| |||||| ||||| ||||||||||| ||||| ||| |||||||| ||||| | || | |||| ||||| ||| |||| ||||||    
T  43868111 agtagaattaattttgtctccacaattgattctatttgaaattaagatttgtagcttttaactcaaaagttaatttttacatataaatttata 43868203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 508
Target Start/End: Original strand, 9134708 - 9134759
Alignment:
Q  457 tccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattct 508  Q
    |||||||||||||||| ||||| ||||| ||||| || ||||||||||||||    
T  9134708 tccaaacacaattcacttttagccagaaccacttctaaccaaaatcaattct 9134759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 353 - 424
Target Start/End: Original strand, 25927288 - 25927359
Alignment:
Q  353 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 424  Q
    |||||||| |||||||| ||||||||||| ||| ||||| |||||||| ||| |||||  ||| ||||||||    
T  25927288 aattgattatgcctccataattgattctatttggagttaagatttgtagcttatgatttcagaattgatttt 25927359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 449
Target Start/End: Complemental strand, 31012854 - 31012747
Alignment:
Q  343 tgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttga-ttttcacacataattttatag 441  Q
    |||| ||||||| ||||||||  | || |||||||||||||  ||  |||||||||||  |||| ||| |||| |||| ||||||||||||  |||||||    
T  31012854 tgtcgagtagaactgattttgatttcagaattgattctactcaaaactaggatttgtagtttttaattttagaattgatttttcacacatatatttatag 31012755  T
Q  442 ttcaactc 449  Q
    ||||||||    
T  31012754 ttcaactc 31012747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 351 - 424
Target Start/End: Complemental strand, 2206451 - 2206377
Alignment:
Q  351 agaattgattttgcctccaaaattgattcta-cttgaagttaggatttgtaccttttgattctagagttgatttt 424  Q
    |||||||||||| |||||||||||||||||| ||||||| ||  | ||| | |||||||||||||  ||||||||    
T  2206451 agaattgatttttcctccaaaattgattctagcttgaagctaaaaattggagcttttgattctaggattgatttt 2206377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 424
Target Start/End: Original strand, 2635058 - 2635214
Alignment:
Q  261 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacacgtctgattgttgtccagtagaattgatt 360  Q
    ||||||||||| ||||| |||||| ||||||||||||| | || || || |||||||| |||       || || |||||| | |  ||||||| |||||    
T  2635058 tatgtttggtttcacttttagagggaccaaaattgattctagaagtgtaaaattgattttga-------catgtttgattgcttttaagtagaactgatt 2635150  T
Q  361 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 424  Q
    ||||||||| |||||||| | ||||||| |||   ||| | ||||||| |||||| ||||||||    
T  2635151 ttgcctccagaattgattatgcttgaagctagagattggagcttttgagtctagaattgatttt 2635214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 456
Target Start/End: Original strand, 22683838 - 22683947
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattcta-cttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 446  Q
    |||| ||||||||||||||||| |||| ||| || ||||||| || ||| |||| ||||||| |||| |  ||||||| |||   || ||||| ||||||    
T  22683838 agtaaaattgattttgcctccagaattaattataacttgaagctatgatctgtagcttttgagtctaaacgtgatttttacattgaaatttattgttcaa 22683937  T
Q  447 ctcgctttta 456  Q
    ||||||||||    
T  22683938 ctcgctttta 22683947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 456
Target Start/End: Complemental strand, 53713680 - 53713563
Alignment:
Q  339 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 438  Q
    |||||||| | ||||||| ||||||  || | |||| ||| ||||||||| || |||||||| |||||||||||| | |||| || |||| | |  | ||    
T  53713680 ttgttgtcgaatagaattaattttgtttcaagaattaattttacttgaagctacgatttgtagcttttgattctataattgacttccacataaatatata 53713581  T
Q  439 tagttcaactcgctttta 456  Q
    ||||||||||| ||||||    
T  53713580 tagttcaactcactttta 53713563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 298
Target Start/End: Complemental strand, 56013954 - 56013913
Alignment:
Q  257 tgtatatgtttggttccacttctagaggaaccaaaattgatt 298  Q
    ||||||||||||||||| |||||||| |||||| ||||||||    
T  56013954 tgtatatgtttggttcctcttctagaagaaccataattgatt 56013913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 29728917 - 29728957
Alignment:
Q  261 tatgtttggttccacttctagaggaaccaaaattgattttg 301  Q
    |||| |||||||||||| ||||||| |||||||||||||||    
T  29728917 tatgattggttccacttttagaggatccaaaattgattttg 29728957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 336 - 388
Target Start/End: Original strand, 52061404 - 52061456
Alignment:
Q  336 tgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaag 388  Q
    ||||||||||  |||||||||||||||| | | | ||||||||||||||||||    
T  52061404 tgattgttgttgagtagaattgattttggccctagaattgattctacttgaag 52061456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 348 - 411
Target Start/End: Complemental strand, 54705501 - 54705437
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttgattc 411  Q
    |||| ||||||||||||||| | ||||||| || |||||||| |||| |||||| ||||||||||    
T  54705501 agtataattgattttgcctcaataattgatactaacttgaagctagggtttgtagcttttgattc 54705437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 255 - 295
Target Start/End: Complemental strand, 54705587 - 54705547
Alignment:
Q  255 tttgtatatgtttggttccacttctagaggaaccaaaattg 295  Q
    ||||| ||||||||||||||||||||||||  |||||||||    
T  54705587 tttgtgtatgtttggttccacttctagaggggccaaaattg 54705547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 348 - 456
Target Start/End: Complemental strand, 55927880 - 55927772
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 447  Q
    |||| |||||||||||||| || ||||||||| |||||| | ||  | ||||| ||| |||||||||| |||||  ||||||  || ||||| ||||||     
T  55927880 agtataattgattttgccttcagaattgattccacttgaggctaaaaattgtagcttctgattctagaattgatcgtcacactcaaatttattgttcaag 55927781  T
Q  448 tcgctttta 456  Q
    || ||||||    
T  55927780 tcactttta 55927772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 261 - 428
Target Start/End: Original strand, 31721 - 31881
Alignment:
Q  261 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacacgtctgattgttgtccagtagaattgatt 360  Q
    |||||||||||||||||||||||  ||||||||||||| | ||||| |||||||||||||||       || || || |||||||| |||| ||||||||    
T  31721 tatgtttggttccacttctagagtgaccaaaattgattctagaggtgtagaattgattctga-------catgtttggttgttgtcgagtaaaattgatt 31813  T
Q  361 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcaca 428  Q
     ||||||||||||||||| ||||||||| ||||||||||| ||||||||| | || ||||||||||||    
T  31814 ctgcctccaaaattgattatacttgaagctaggatttgtagcttttgattattgaattgattttcaca 31881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 342 - 508
Target Start/End: Complemental strand, 33019272 - 33019096
Alignment:
Q  342 ttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatag 441  Q
    ||||| |||| |||||||| |||||| | |||||||| || |||||| ||| ||||||| |||||| || |||| ||||||||||||||||| |||||||    
T  33019272 ttgtcgagtataattgattctgcctctagaattgattatatttgaagctagaatttgtagcttttggttttagaattgattttcacacataaatttatag 33019173  T
Q  442 ttcaactcgctttt----------atccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattct 508  Q
    |||||||| |||||          |||||||||||| |||| |||||||||||||||||||| ||||||||||||||    
T  33019172 ttcaactcacttttacatgaatgcatccaaacacaaatcacttttagtcagaatcacttttaaccaaaatcaattct 33019096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 348 - 457
Target Start/End: Original strand, 10644578 - 10644687
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 447  Q
    ||||||||||||| ||||||||||||| |||||||||||||||| ||||||||  |||| ||| |||| || | ||||| |||||| |||||||||||||    
T  10644578 agtagaattgattctgcctccaaaatttattctacttgaagttaagatttgtagtttttcattatagaattaactttcatacataaatttatagttcaac 10644677  T
Q  448 tcgcttttat 457  Q
    || |||||||    
T  10644678 tcacttttat 10644687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 261 - 431
Target Start/End: Original strand, 30503104 - 30503267
Alignment:
Q  261 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacacgtctgattgttgtccagtagaattgatt 360  Q
    |||| ||||||||||||||| |||   |||||||||||||||| || |||||||||||||       |||| ||  ||||| | || || |||| |||||    
T  30503104 tatgcttggttccacttctaaaggggtcaaaattgattttggaagtgtagaattgattct-------aacatgttcgattgatttcaagaagaaatgatt 30503196  T
Q  361 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacat 431  Q
    ||||||||||||||||||||||||||||  |||||| ||| |||||||||| ||| |||||||| ||||||    
T  30503197 ttgcctccaaaattgattctacttgaagccaggattcgtagcttttgattcaagaattgatttttacacat 30503267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 261 - 320
Target Start/End: Complemental strand, 33047742 - 33047683
Alignment:
Q  261 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattct 320  Q
    ||||||||||| | |||||||||| ||||||||||||||||||||| |||||||||||||    
T  33047742 tatgtttggtttcgcttctagagggaccaaaattgattttggaggtgtagaattgattct 33047683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 348 - 430
Target Start/End: Complemental strand, 2002805 - 2002723
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 430  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||||||||||  |||| |||||| | |||||||| |||||    
T  2002805 agtagaattgattttgcctccagacctgattctacttgaagctaggatttgtagtttttcattctaaaattgatttttacaca 2002723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 326 - 456
Target Start/End: Complemental strand, 11504193 - 11504064
Alignment:
Q  326 ctaacacgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttc 425  Q
    |||||| || |||| |||||  |||| || ||||| | |||||||||||||||||||   |||||||||||||||  |||||||| |||| ||| |||||    
T  11504193 ctaacatgtttgatagttgttgagtataactgattctacctccaaaattgattctaccgaaagttaggatttgtagtttttgattatagaattg-ttttc 11504095  T
Q  426 acacataattttatagttcaactcgctttta 456  Q
    ||||| ||  |||||||||||||| ||||||    
T  11504094 acacacaaagttatagttcaactcactttta 11504064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 348 - 454
Target Start/End: Original strand, 31453358 - 31453464
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 447  Q
    ||||||||| |||||||||| | |||||||||||||||||| ||  |||||| ||||||||||||  | ||||||||||| || || |||| |||| |||    
T  31453358 agtagaatttattttgcctctataattgattctacttgaagctaaaatttgttccttttgattctgaaattgattttcacgcacaaatttagagtttaac 31453457  T
Q  448 tcgcttt 454  Q
    || ||||    
T  31453458 tcacttt 31453464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 364 - 429
Target Start/End: Original strand, 42740968 - 42741033
Alignment:
Q  364 cctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 429  Q
    |||||| |||||||||||||||||| || |||||||| |||||||||||||| |||||||| ||||    
T  42740968 cctccataattgattctacttgaagctaagatttgtagcttttgattctagaattgatttttacac 42741033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 352 - 456
Target Start/End: Original strand, 16518758 - 16518861
Alignment:
Q  352 gaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgc 451  Q
    |||||| |||||| |||| ||||||||||||| |||| ||||||||||| ||||||||| || || ||| ||| || || || ||||||||||||||| |    
T  16518758 gaattggttttgcttccagaattgattctactagaagataggatttgtagcttttgattata-agatgacttttacgcacaaatttatagttcaactcac 16518856  T
Q  452 tttta 456  Q
    |||||    
T  16518857 tttta 16518861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 343 - 449
Target Start/End: Original strand, 22535968 - 22536074
Alignment:
Q  343 tgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 442  Q
    |||| |||||||||||||||||||  | ||||||||||||||||| |||| ||||| | ||||||||| |||| || |||||  |||| |  ||||||||    
T  22535968 tgtcaagtagaattgattttgcctttagaattgattctacttgaatttagaatttgaagcttttgattttagaattaatttttgcacacatatttatagt 22536067  T
Q  443 tcaactc 449  Q
    | |||||    
T  22536068 taaactc 22536074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 339 - 448
Target Start/End: Original strand, 3352042 - 3352151
Alignment:
Q  339 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 438  Q
    |||||||  ||||||| |||| ||| || || |||||||| ||||||||||| ||| ||| | |||||||||||| | |||||||||||||| || ||||    
T  3352042 ttgttgttgagtagaaatgatcttgtcttcataattgattttacttgaagttgggaattgcagcttttgattctataattgattttcacacacaaattta 3352141  T
Q  439 tagttcaact 448  Q
    |  |||||||    
T  3352142 tgtttcaact 3352151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 354 - 456
Target Start/End: Original strand, 42982523 - 42982627
Alignment:
Q  354 attgattttgcctccaaaatt--gattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgc 451  Q
    |||||||||||||||| ||||  |||||||||||||| ||| | ||||| |||||||||| ||| |||||||| ||||| || |||||  | |||||| |    
T  42982523 attgattttgcctccagaattttgattctacttgaagctagaaattgtagcttttgattccagaattgatttttacacacaaatttattttacaactcac 42982622  T
Q  452 tttta 456  Q
    |||||    
T  42982623 tttta 42982627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 349 - 456
Target Start/End: Original strand, 33502223 - 33502320
Alignment:
Q  349 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 448  Q
    ||||||||||||||||||||| |||||||||||||          ||||||| |||||||||||| | |||||||| ||||| |  ||||||||||||||    
T  33502223 gtagaattgattttgcctccagaattgattctact----------atttgtaacttttgattctaaaattgatttttacacacatatttatagttcaact 33502312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 456
Target Start/End: Complemental strand, 26032122 - 26032037
Alignment:
Q  371 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 456  Q
    |||||||| ||||||||||||| ||||||| | |||||||||  | |||| ||  |||||||| |||||| |||||||| ||||||    
T  26032122 aattgattatacttgaagttagaatttgtatcatttgattcttaaattgacttgtacacataaatttatacttcaactcactttta 26032037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 43501123 - 43501187
Alignment:
Q  371 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatt 435  Q
    |||||||||||||||||  ||||||||||| ||||||||| |||| |||||| | ||||| ||||    
T  43501123 aattgattctacttgaaactaggatttgtagcttttgattttagaattgattctaacacaaaatt 43501187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 348 - 383
Target Start/End: Complemental strand, 1976975 - 1976940
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctact 383  Q
    |||||||||||||||| |||||||||||||||||||    
T  1976975 agtagaattgattttgtctccaaaattgattctact 1976940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 680385 - 680347
Alignment:
Q  350 tagaattgattttgcctccaaaattgattctacttgaag 388  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  680385 tagaactgattttgcctccagaattgattctacttgaag 680347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 32777946 - 32777988
Alignment:
Q  349 gtagaattgattttgcctccaaaattgattctacttgaagtta 391  Q
    ||||||||||||||||||||| |||| |||| |||||||||||    
T  32777946 gtagaattgattttgcctccataatttattcaacttgaagtta 32777988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 449
Target Start/End: Complemental strand, 5533113 - 5533040
Alignment:
Q  376 attctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 449  Q
    ||||||||||||| ||  ||||||| |||||||||||  | |||||||  |||||||| |||||| ||||||||    
T  5533113 attctacttgaagctactatttgtagcttttgattcttaaattgatttaaacacataaatttataattcaactc 5533040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 7629757 - 7629814
Alignment:
Q  261 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 318  Q
    ||||||||||||||||| | ||||| |||| ||||||| | ||||| |||||||||||    
T  7629757 tatgtttggttccacttttggaggagccaagattgattctagaggtgtagaattgatt 7629814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 449
Target Start/End: Original strand, 12037012 - 12037137
Alignment:
Q  324 ttctaacacgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 423  Q
    |||||||| || || ||||||||  ||||||||| || ||  || | ||||||||||| |||||  ||  ||||||| |||||||||||| | |||||||    
T  12037012 ttctaacatgtttggttgttgtcgtgtagaattggttatgtgtctagaattgattctagttgaaactaaaatttgtagcttttgattctacaattgattt 12037111  T
Q  424 tcacacataattttatagttcaactc 449  Q
    ||| | | || ||||| |||||||||    
T  12037112 tcataaacaaatttatggttcaactc 12037137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 424
Target Start/End: Original strand, 21659693 - 21659770
Alignment:
Q  347 cagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 424  Q
    ||||| ||||||||||||||||| ||||| ||||||| | || ||  | ||||| ||| |||||||||| ||||||||    
T  21659693 cagtaaaattgattttgcctccataattgtttctactcgtagctaaaaattgtagcttatgattctagaattgatttt 21659770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 408
Target Start/End: Original strand, 37561681 - 37561742
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttga 408  Q
    |||||| ||||||||||||| | |||||||||| |||||||  || ||||||||||||||||    
T  37561681 agtagatttgattttgcctctataattgattctaacttgaaactacgatttgtaccttttga 37561742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 455 - 507
Target Start/End: Original strand, 13912879 - 13912931
Alignment:
Q  455 tatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattc 507  Q
    ||||||||||||| |||| ||| |||||||| | ||||| |||||||||||||    
T  13912879 tatccaaacacaaatcactttttgtcagaattaattttaaccaaaatcaattc 13912931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 261 - 508
Target Start/End: Original strand, 4910803 - 4911053
Alignment:
Q  261 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacacgtctgattgttgtccagtagaattgatt 360  Q
    ||||||||||||||||| |||||  || | |||||||| || | || |||||||||||||||       || || || |||| ||| | |||||||||||    
T  4910803 tatgtttggttccacttttagagagactataattgattctgaatgtgtagaattgattctga-------catgtttggttgtcgtcaattagaattgatt 4910895  T
Q  361 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgcttt------ 454  Q
     |||||| |||||||||||||||||||| || |||||||| |||||||||||||| |||||||||||| | || |||||||||| |||| ||||          
T  4910896 ctgcctcaaaaattgattctacttgaagctatgatttgtagcttttgattctagaattgattttcacatacaaatttatagttcgactcacttttacata 4910995  T
Q  455 ----tatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattct 508  Q
        |||||||||| || |||| |||||||||||| ||||||| ||||||| ||||||    
T  4910996 aatgtatccaaacataaatcacttttagtcagaattacttttaaccaaaattaattct 4911053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 273 - 448
Target Start/End: Original strand, 3481946 - 3482121
Alignment:
Q  273 cacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacacgtctgattgttgtccagtagaattgattttgcctccaaaa 372  Q
    ||||| |||||| | || |||||||| || | || |||||||||||||||||| | ||| || |||||||||||  |||||||||||| || ||  | ||    
T  3481946 cacttttagagggatcataattgattatgtatgtgtagaattgattctgagttatgacatgtttgattgttgtcaggtagaattgattctgtctttagaa 3482045  T
Q  373 ttgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 448  Q
    |||||| |||||||||||| |||||||| | ||||||| |||| |||||||||||||| || ||||||||||||||    
T  3482046 ttgattatacttgaagttaagatttgtagcctttgattttagaattgattttcacacacaagtttatagttcaact 3482121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 255 - 430
Target Start/End: Complemental strand, 5724826 - 5724658
Alignment:
Q  255 tttgtatatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacacgtctgattgttgtccagtagaa 354  Q
    ||||| ||||||||||||||||||||||||  |||||||| ||| | || || |||||||||||||||       || || ||  || | ||  ||||||    
T  5724826 tttgtgtatgtttggttccacttctagaggggccaaaattaattctagaagtgtagaattgattctga-------catgtttggatgctttcaggtagaa 5724734  T
Q  355 ttgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 430  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| | |||||||| |||||    
T  5724733 ttgattttgcctccaaaattgattctacttgaagctaggatttgtaactttttattctataattgatttttacaca 5724658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 348 - 446
Target Start/End: Complemental strand, 6654200 - 6654102
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 446  Q
    ||||||||||||||| ||| || |||| ||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||| || ||||||||||||    
T  6654200 agtagaattgatttttccttcagaattaattctacttgaagctaggatttgtagcttttaattctagatttgattttcacacagaaatttatagttcaa 6654102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 265 - 456
Target Start/End: Complemental strand, 25195550 - 25195368
Alignment:
Q  265 tttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacacgtctgattgttgtccagtagaattgattttgc 364  Q
    |||||||||||||||||||||||||||||||||| |||| || || |||||||||||       ||| || || ||| | || |||| |||||||| |||    
T  25195550 tttggttccacttctagaggaaccaaaattgattctggatgtgtataattgattctg-------acatgtttggttgctatcgagtataattgattctgc 25195458  T
Q  365 ctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 456  Q
    ||||  ||||||||||||||||||   |||||||||  |||| |||||| | |||||||||| ||| || |||| | |||||||| ||||||    
T  25195457 ctccggaattgattctacttgaag--cggatttgtagtttttcattctataattgattttcatacacaaatttacaattcaactcactttta 25195368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 358 - 442
Target Start/End: Complemental strand, 7952809 - 7952725
Alignment:
Q  358 attttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 442  Q
    ||||||||||||||||| |||||||||||||  |||||||||| |||||||||||||| |||  ||||||||| || ||||||||    
T  7952809 attttgcctccaaaatttattctacttgaagcgaggatttgtagcttttgattctagaattgggtttcacacacaaatttatagt 7952725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 348 - 456
Target Start/End: Original strand, 16540082 - 16540190
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 447  Q
    |||| |||||||| || |||||||||||||||||||||||| ||||||||||| ||||||||| | || |||| ||||||  | |  ||||||||| |||    
T  16540082 agtaaaattgattctgtctccaaaattgattctacttgaagctaggatttgtagcttttgattattgaattgagtttcacttacatatttatagttaaac 16540181  T
Q  448 tcgctttta 456  Q
    || ||||||    
T  16540182 tcactttta 16540190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 348 - 456
Target Start/End: Complemental strand, 1485256 - 1485148
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 447  Q
    ||||||||| |||||||||  | |||||||||||||||||  ||| | ||| | |||||||||||||| |||||||| ||||  || ||||| |||||||    
T  1485256 agtagaattaattttgcctttagaattgattctacttgaatctagaaattggagcttttgattctagaattgattttaacactcaaatttattgttcaac 1485157  T
Q  448 tcgctttta 456  Q
    || ||||||    
T  1485156 tcactttta 1485148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 371 - 430
Target Start/End: Complemental strand, 6896037 - 6895978
Alignment:
Q  371 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 430  Q
    |||||||||||| ||||||||||||||||| |||||||||||||| || |||||| ||||    
T  6896037 aattgattctacctgaagttaggatttgtagcttttgattctagaatttattttcgcaca 6895978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 349 - 456
Target Start/End: Original strand, 26280581 - 26280688
Alignment:
Q  349 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 448  Q
    ||||||||||||||||||| | ||||||||| |||||||| ||| |||||||  ||||||||| | | |||||||| ||  | || ||||||||| ||||    
T  26280581 gtagaattgattttgcctcaagaattgattccacttgaagctagaatttgtagtttttgattccaaaattgatttttacgtacaaatttatagttaaact 26280680  T
Q  449 cgctttta 456  Q
    | ||||||    
T  26280681 cactttta 26280688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 348 - 422
Target Start/End: Complemental strand, 765496 - 765422
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatt 422  Q
    ||||||| || ||||| ||| | |||||||||||||||||| || |||||||| |||||||||||||| ||||||    
T  765496 agtagaactggttttggctcaagaattgattctacttgaagctatgatttgtagcttttgattctagaattgatt 765422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 348 - 429
Target Start/End: Original strand, 2234490 - 2234571
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 429  Q
    ||||||||||||||||||| |||||||||||| |||||||| ||  |  || | |||||||||||||| |||||||| ||||    
T  2234490 agtagaattgattttgccttcaaaattgattcaacttgaagctaaaaactgaagcttttgattctagaattgattttaacac 2234571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 452 - 506
Target Start/End: Original strand, 4908051 - 4908105
Alignment:
Q  452 ttttatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaatt 506  Q
    |||||||||||||||| |||| |||||  ||||||||||||| ||||||||||||    
T  4908051 ttttatccaaacacaaatcacttttaggaagaatcacttttaaccaaaatcaatt 4908105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 353 - 429
Target Start/End: Original strand, 852512 - 852588
Alignment:
Q  353 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 429  Q
    |||| |||||||||||| ||||||||| |||||||| ||| | |||||  || |||||||||| |||||||| ||||    
T  852512 aatttattttgcctccataattgattcaacttgaagctagaaattgtaggttctgattctagaattgatttttacac 852588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 348 - 424
Target Start/End: Complemental strand, 10400805 - 10400729
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 424  Q
    |||||||||| ||||||| | | |||| |||||| ||||||||||||||| || | |||||||||| | ||||||||    
T  10400805 agtagaattgtttttgccactagaattaattctagttgaagttaggatttctagcctttgattctaaaattgatttt 10400729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 350 - 381
Target Start/End: Original strand, 24974192 - 24974223
Alignment:
Q  350 tagaattgattttgcctccaaaattgattcta 381  Q
    ||||||||||||||||||||||||||||||||    
T  24974192 tagaattgattttgcctccaaaattgattcta 24974223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 350 - 456
Target Start/End: Complemental strand, 434345 - 434239
Alignment:
Q  350 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 449  Q
    ||||||||||||| | | || |||||||| || |||||||||  |||  || ||||||||| |||| |||||||| | |||||| |||| | ||||||||    
T  434345 tagaattgatttttctttcataattgattatatttgaagttaaaattaatagcttttgattttagaattgatttttatacataaatttaaatttcaactc 434246  T
Q  450 gctttta 456  Q
     ||||||    
T  434245 actttta 434239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 371 - 449
Target Start/End: Original strand, 25195848 - 25195926
Alignment:
Q  371 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 449  Q
    ||||||||||| || ||  |||||||| || |||||||||||||| |||| ||  ||||| || |||||||||||||||    
T  25195848 aattgattctaattaaaactaggatttatagcttttgattctagaattgaattgtacacacaaatttatagttcaactc 25195926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 350 - 456
Target Start/End: Original strand, 34620863 - 34620969
Alignment:
Q  350 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 449  Q
    ||||||| |||||||||||  |||||||||||| ||||| ||| | |  || ||| |||||||||| |||||||| ||||  || |||||  ||||||||    
T  34620863 tagaattaattttgcctccggaattgattctacatgaagctagaaatcatagcttctgattctagaattgatttttacactaaaatttatttttcaactc 34620962  T
Q  450 gctttta 456  Q
     ||||||    
T  34620963 actttta 34620969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 350 - 456
Target Start/End: Original strand, 34748300 - 34748406
Alignment:
Q  350 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 449  Q
    ||||||| |||||||||||  |||||||||||| ||||| ||| | |  || ||| |||||||||| |||||||| ||||  || |||||  ||||||||    
T  34748300 tagaattaattttgcctccggaattgattctacatgaagctagaaatcatagcttctgattctagaattgatttttacactaaaatttatttttcaactc 34748399  T
Q  450 gctttta 456  Q
     ||||||    
T  34748400 actttta 34748406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 35098282 - 35098244
Alignment:
Q  350 tagaattgattttgcctccaaaattgattctacttgaag 388  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  35098282 tagaattgattttgcctacaaaattgattctaattgaag 35098244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 408
Target Start/End: Complemental strand, 10565031 - 10564974
Alignment:
Q  352 gaattgattttgcctccaaaattgattcta-cttgaagttaggatttgtaccttttga 408  Q
    ||||| |||||||||| ||| | ||||||| ||||||||||||||||||| |||||||    
T  10565031 gaatttattttgcctctaaattcgattctaacttgaagttaggatttgtagcttttga 10564974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 449
Target Start/End: Original strand, 17225875 - 17225928
Alignment:
Q  396 ttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 449  Q
    ||||| |||||||||||||| |||||||| ||| | || |||||||||||||||    
T  17225875 ttgtagcttttgattctagaattgatttttacatacaaatttatagttcaactc 17225928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 348 - 399
Target Start/End: Complemental strand, 2234324 - 2234272
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgt 399  Q
    |||||||||||||||||||||  |||||||||| || |||||||| |||||||    
T  2234324 agtagaattgattttgcctcctgaattgattctaacatgaagttaagatttgt 2234272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 372 - 400
Target Start/End: Original strand, 14993077 - 14993105
Alignment:
Q  372 attgattctacttgaagttaggatttgta 400  Q
    |||||||||||||||||||||||||||||    
T  14993077 attgattctacttgaagttaggatttgta 14993105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 390 - 446
Target Start/End: Complemental strand, 19601513 - 19601457
Alignment:
Q  390 taggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 446  Q
    ||||||||||| |||||||||||| |  ||||||| ||| |||| ||||||||||||    
T  19601513 taggatttgtagcttttgattctataactgatttttacaaataaatttatagttcaa 19601457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 31710572 - 31710512
Alignment:
Q  261 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctg 321  Q
    ||||||||||||| ||| |||||  |||| |||||||| |||| || ||||||||||||||    
T  31710572 tatgtttggttcctcttttagagagaccataattgattgtggatgtgtagaattgattctg 31710512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 5e-24; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 350 - 508
Target Start/End: Original strand, 42858085 - 42858253
Alignment:
Q  350 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 449  Q
    ||||||| |||||| ||| | |||||||| ||||||||||||||||||| | ||||| |||||| | |||||||||||||| || |||||||||||||||    
T  42858085 tagaattcattttgactctagaattgattttacttgaagttaggatttggagcttttaattctataattgattttcacacacaaatttatagttcaactc 42858184  T
Q  450 gct----------tttatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattct 508  Q
     ||          ||||| ||||||||  |||| |||||||||||||| ||||| ||||||||||||||    
T  42858185 acttttacatgaatttattcaaacacagatcacttttagtcagaatcatttttaaccaaaatcaattct 42858253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 353 - 444
Target Start/End: Original strand, 14299310 - 14299401
Alignment:
Q  353 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttc 444  Q
    |||||||||||| |  ||||||||||||||||||||||||||||||||  |||| |||||||| ||| ||||||||||||| ||||||||||    
T  14299310 aattgattttgcttttaaaattgattctacttgaagttaggatttgtagttttttattctagaattggttttcacacataaatttatagttc 14299401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 356 - 457
Target Start/End: Original strand, 9818717 - 9818819
Alignment:
Q  356 tgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttga-ttttcacacataattttatagttcaactcgcttt 454  Q
    |||||||||||||| |||||||||||||||||| || |||||||| |||||||||||||| |||| |||| | ||| || ||||||||||||||| ||||    
T  9818717 tgattttgcctccataattgattctacttgaagctatgatttgtagcttttgattctagaattgattttttaaacacaaatttatagttcaactcacttt 9818816  T
Q  455 tat 457  Q
    |||    
T  9818817 tat 9818819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 265 - 430
Target Start/End: Original strand, 11647981 - 11648139
Alignment:
Q  265 tttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacacgtctgattgttgtccagtagaattgattttgc 364  Q
    ||||| |||||||||||||| |||| |||||||||||| ||| || |||||||| |||       || || |||||| |||| ||||||||| ||| |||    
T  11647981 tttggctccacttctagagggaccataattgattttggtggtgtataattgattttga-------catgtttgattgctgtcgagtagaatttattatgc 11648073  T
Q  365 ctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 430  Q
     |  |||||||||||||||||||| || ||||||||| |||||||| || | ||||||||||||||    
T  11648074 atttaaaattgattctacttgaagctaagatttgtacattttgattataaaattgattttcacaca 11648139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 371 - 456
Target Start/End: Complemental strand, 6951392 - 6951307
Alignment:
Q  371 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 456  Q
    |||||||||||||||||||||||||||||| |||||||||||| | |||||||  |||||||| |||||| ||||| || ||||||    
T  6951392 aattgattctacttgaagttaggatttgtagcttttgattctataattgatttgtacacataaatttataattcaattcactttta 6951307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 366 - 455
Target Start/End: Original strand, 38845436 - 38845525
Alignment:
Q  366 tccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttt 455  Q
    ||||||||||||||||||||||| || ||||||||  ||||||||||||| |||||||||||||| || | ||||||| ||||| |||||    
T  38845436 tccaaaattgattctacttgaagctaagatttgtagtttttgattctagaattgattttcacacacaaatatatagttaaactcactttt 38845525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 371 - 506
Target Start/End: Complemental strand, 18851169 - 18851024
Alignment:
Q  371 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctt----------ttatcca 460  Q
    |||||||||||||||||| || |||||||| ||||||||| |||| |||||||||||||| |  ||||||||| ||||| |||          |||||||    
T  18851169 aattgattctacttgaagctatgatttgtagcttttgattatagaattgattttcacacacatatttatagttaaactcacttttacatgaagttatcca 18851070  T
Q  461 aacacaattcacctttagtcagaatcacttttacccaaaatcaatt 506  Q
    |||||||  ||| |||||||| ||| ||||||| ||||||||||||    
T  18851069 aacacaaaccacatttagtcaaaattacttttaaccaaaatcaatt 18851024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 339 - 457
Target Start/End: Complemental strand, 28110557 - 28110439
Alignment:
Q  339 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 438  Q
    |||||||||| | ||||||||| ||  |  |||||||||| || || ||||| ||||||||| ||||||||| |||| |||||||||||||| || ||||    
T  28110557 ttgttgtccatttgaattgattctgtatttaaaattgattttattttaagttgggatttgtaacttttgattttagaattgattttcacacacaaattta 28110458  T
Q  439 tagttcaactcgcttttat 457  Q
    ||||| ||||| |||||||    
T  28110457 tagttgaactcacttttat 28110439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 261 - 318
Target Start/End: Complemental strand, 38845701 - 38845644
Alignment:
Q  261 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 318  Q
    |||||||||||||||||||||||  ||||||||||||| ||||||| |||||||||||    
T  38845701 tatgtttggttccacttctagagagaccaaaattgattctggaggtgtagaattgatt 38845644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 350 - 456
Target Start/End: Complemental strand, 42439726 - 42439619
Alignment:
Q  350 tagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 448  Q
    ||||||||||||| |||||| |||||||||| |||||||| ||| || |||| ||||||| |||| |  ||||||| ||||  |||||||| ||||||||    
T  42439726 tagaattgatttttcctccagaattgattctaacttgaagctagaatctgtagcttttgagtctaaacgtgatttttacactaaattttatcgttcaact 42439627  T
Q  449 cgctttta 456  Q
    | ||||||    
T  42439626 cactttta 42439619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 348 - 430
Target Start/End: Complemental strand, 34250461 - 34250379
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 430  Q
    ||||||||||||| |||||| | |||||||||||||||| | ||| | ||||| |||||||||||| | ||| ||||||||||    
T  34250461 agtagaattgattatgcctctagaattgattctacttgatgctagaaattgtagcttttgattctacaattgtttttcacaca 34250379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 339 - 449
Target Start/End: Original strand, 36290001 - 36290111
Alignment:
Q  339 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 438  Q
    |||||||| ||||||||| || |||| | || |||||||| |||||||||||| |||||||   ||||||||| | | |||||||||| ||| |  ||||    
T  36290001 ttgttgtcgagtagaattaatgttgcattcataattgattatacttgaagttaagatttgttagttttgattccatatttgattttcagacacatattta 36290100  T
Q  439 tagttcaactc 449  Q
    |||||||||||    
T  36290101 tagttcaactc 36290111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 353 - 449
Target Start/End: Complemental strand, 13171866 - 13171769
Alignment:
Q  353 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttga-ttttcacacataattttatagttcaactc 449  Q
    |||||||| |||||||||||||||||||||||||||  | ||||||||  ||||||||||| |  ||| |||||| ||| || ||||||||| |||||    
T  13171866 aattgattctgcctccaaaattgattctacttgaagaaaagatttgtaaattttgattctataaatgatttttcatacaaaaatttatagttaaactc 13171769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 339 - 400
Target Start/End: Complemental strand, 27374410 - 27374349
Alignment:
Q  339 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgta 400  Q
    ||||| || ||||||||| |||||||||  | ||||||||||||||||||||||||||||||    
T  27374410 ttgttttcaagtagaattaattttgccttaagaattgattctacttgaagttaggatttgta 27374349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 348 - 429
Target Start/End: Original strand, 36639912 - 36639993
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 429  Q
    |||||||||||||||||||||||||| |||||||||||||| | | | ||||| ||| | |||||||| ||| |||| ||||    
T  36639912 agtagaattgattttgcctccaaaatagattctacttgaagctggaaattgtagcttctaattctagaattgttttttacac 36639993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 371 - 447
Target Start/End: Original strand, 39097244 - 39097320
Alignment:
Q  371 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 447  Q
    |||||||||||||||||| ||  ||||||| ||||| ||| || | ||||||||||||||||| |||| ||||||||    
T  39097244 aattgattctacttgaagctaaaatttgtaacttttaattatataattgattttcacacataaatttaaagttcaac 39097320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 349 - 401
Target Start/End: Original strand, 43268467 - 43268519
Alignment:
Q  349 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtac 401  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||||||    
T  43268467 gtagaattgattttgcctccagaattggttctacttgaagttgagatttgtac 43268519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 353 - 456
Target Start/End: Original strand, 31906239 - 31906342
Alignment:
Q  353 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgct 452  Q
    ||||| |||| |||| | |||||||| ||||||||| || |||||||| ||||||||| || | ||||| ||  || |||| ||||||||||||||| ||    
T  31906239 aattgtttttacctctataattgattttacttgaagctatgatttgtaacttttgattatataattgatattttcatataaatttatagttcaactcact 31906338  T
Q  453 ttta 456  Q
    ||||    
T  31906339 ttta 31906342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 261 - 322
Target Start/End: Complemental strand, 18851272 - 18851211
Alignment:
Q  261 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctga 322  Q
    |||||||| |||| |||||||||| ||||||||||||| ||||| | ||||||||| |||||    
T  18851272 tatgtttgattccgcttctagagggaccaaaattgattatggagttgtagaattgactctga 18851211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 261 - 322
Target Start/End: Complemental strand, 22226426 - 22226365
Alignment:
Q  261 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctga 322  Q
    |||||||| |||||||| |||| |||| | ||||||||||||| || |||||||||||||||    
T  22226426 tatgtttgattccacttttagacgaactataattgattttggacgtgtagaattgattctga 22226365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 449
Target Start/End: Original strand, 18637282 - 18637358
Alignment:
Q  371 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 449  Q
    ||||||||| |||||||| || |||  ||| |||||||||||||| |||||||| ||||| |  |||||||||||||||    
T  18637282 aattgattccacttgaagctaagataagtagcttttgattctagaattgatttttacacaca--tttatagttcaactc 18637358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 348 - 424
Target Start/End: Original strand, 1105414 - 1105492
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttga-ttctagagttgatttt 424  Q
    ||||||||||||||||| | ||||||||||| | ||| ||||||| |||||||| ||||||| ||||| | ||||||||    
T  1105414 agtagaattgattttgctttcaaaattgattttaactcgaagttatgatttgtagcttttgacttctataattgatttt 1105492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 336 - 449
Target Start/End: Original strand, 5468736 - 5468850
Alignment:
Q  336 tgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattcta-gagttgattttcacacataat 434  Q
    ||||||||||| | || |||||||| |||||||| | ||||||||||||||   |||||||| ||  |||| ||| ||  | |||||||||| ||| ||     
T  5468736 tgattgttgtcgattataattgattctgcctccatatttgattctacttgagactaggatttataatttttaattttataatttgattttcatacacaaa 5468835  T
Q  435 tttatagttcaactc 449  Q
    |||||||||||||||    
T  5468836 tttatagttcaactc 5468850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 318
Target Start/End: Complemental strand, 3043194 - 3043137
Alignment:
Q  261 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 318  Q
    ||||| ||||||||||| | |||||| ||||||||||| | ||||| |||||||||||    
T  3043194 tatgtctggttccacttatggaggaatcaaaattgattctagaggtgtagaattgatt 3043137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 385
Target Start/End: Complemental strand, 22572540 - 22572511
Alignment:
Q  356 tgattttgcctccaaaattgattctacttg 385  Q
    ||||||||||||||||||||||||||||||    
T  22572540 tgattttgcctccaaaattgattctacttg 22572511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 413
Target Start/End: Original strand, 32980519 - 32980583
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattcta 413  Q
    ||||||| ||||||||| | || |||||||| |||||||||||| ||||| || ||||||||||||    
T  32980519 agtagaagtgattttgc-tgcagaattgattttacttgaagttaagatttatatcttttgattcta 32980583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 353 - 408
Target Start/End: Complemental strand, 3970506 - 3970450
Alignment:
Q  353 aattgattttgcctccaaaattgattctact-tgaagttaggatttgtaccttttga 408  Q
    ||||||||||||||||| ||||||||||| | ||||| ||||| ||||| |||||||    
T  3970506 aattgattttgcctccagaattgattctaatctgaagctaggaattgtagcttttga 3970450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 376 - 424
Target Start/End: Original strand, 8121547 - 8121595
Alignment:
Q  376 attctacttgaagttaggatttgtaccttttgattctagagttgatttt 424  Q
    ||||||||| ||||||| | ||||| ||| |||||||||||||||||||    
T  8121547 attctacttaaagttagaaattgtagcttctgattctagagttgatttt 8121595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 372 - 444
Target Start/End: Complemental strand, 22226322 - 22226250
Alignment:
Q  372 attgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttc 444  Q
    ||||||||||||||||| ||| ||||||| ||||||||| |||| || | ||| ||||| || |||| |||||    
T  22226322 attgattctacttgaagatagtatttgtagcttttgattttagaattaacttttacacacaaatttagagttc 22226250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 7e-20; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 374 - 508
Target Start/End: Original strand, 30557505 - 30557647
Alignment:
Q  374 tgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgcttt----------tatccaaac 463  Q
    |||||||| |||||| |||||||||||  ||||||||||||| |||||||||||||  || ||||||||||||||| ||||          |||||||||    
T  30557505 tgattctagttgaagctaggatttgtagtttttgattctagaattgattttcacac--aaatttatagttcaactcacttttatatgaatgtatccaaac 30557602  T
Q  464 acaattcacctttagtcagaatcacttttacccaaaatcaattct 508  Q
    |||| |||| | |||||||| ||||||||| ||||||||||||||    
T  30557603 acaaatcacttctagtcagagtcacttttaaccaaaatcaattct 30557647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 261 - 456
Target Start/End: Complemental strand, 28084078 - 28083890
Alignment:
Q  261 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacacgtctgattgttgtccagtagaattgatt 360  Q
    |||||||| |||||||||||||||| |||||||||| | |||  || |||||||||||||||       ||  | || ||||| || |||||||||||||    
T  28084078 tatgtttgattccacttctagaggagccaaaattgactctggtagtgtagaattgattctga-------catatttggttgttttcgagtagaattgatt 28083986  T
Q  361 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 456  Q
    ||| || |  |||||||||||||||||| ||| ||||||| |||||||||||| | || ||||| ||||| || |||  |||||| ||| ||||||    
T  28083985 ttgtcttcgtaattgattctacttgaagctagaatttgtagcttttgattctataattaatttttacacacaaatttcaagttcagctcactttta 28083890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 348 - 456
Target Start/End: Original strand, 6021779 - 6021887
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 447  Q
    |||||||||||||||||||| | ||| |||||||||||||| |||||| |||| |||||||||||| | | |||||| ||||  || ||||| |||||||    
T  6021779 agtagaattgattttgcctctagaatcgattctacttgaagctaggatatgtagcttttgattctataatagatttttacactcaagtttatggttcaac 6021878  T
Q  448 tcgctttta 456  Q
    || ||||||    
T  6021879 tcactttta 6021887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 380 - 456
Target Start/End: Original strand, 7524120 - 7524196
Alignment:
Q  380 tacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 456  Q
    ||||||||||||||||||||| ||||||||| |||| |||||||| ||||| || ||||||||||||||| ||||||    
T  7524120 tacttgaagttaggatttgtagcttttgattatagaattgatttttacacacaaatttatagttcaactcactttta 7524196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 349 - 456
Target Start/End: Complemental strand, 38797738 - 38797631
Alignment:
Q  349 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 448  Q
    ||||||||| || |||||||  |||||||| |||||||||||| |||||||| ||| | | || ||| |||||||||||||| || ||||||||||||||    
T  38797738 gtagaattggttatgcctccttaattgattatacttgaagttatgatttgtaacttctaaatcaagaattgattttcacacacaaatttatagttcaact 38797639  T
Q  449 cgctttta 456  Q
    | ||||||    
T  38797638 cactttta 38797631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 350 - 456
Target Start/End: Original strand, 3016140 - 3016245
Alignment:
Q  350 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 449  Q
    ||||||||||||||| |  | ||||||||||||||||| |||| ||||||| |||||||||||||| ||||| || |||||||| ||||  |||||||||    
T  3016140 tagaattgattttgcttt-ataattgattctacttgaacttagaatttgtagcttttgattctagaattgatgtttacacataaatttacggttcaactc 3016238  T
Q  450 gctttta 456  Q
     ||||||    
T  3016239 actttta 3016245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 375 - 456
Target Start/End: Original strand, 11049252 - 11049333
Alignment:
Q  375 gattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 456  Q
    |||||||||||||| ||||||||||| |||||||||||| | |||||||| ||||| || |||||||||||| || ||||||    
T  11049252 gattctacttgaagctaggatttgtagcttttgattctaaaattgatttttacacacaaatttatagttcaagtcactttta 11049333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 347 - 449
Target Start/End: Original strand, 1514317 - 1514419
Alignment:
Q  347 cagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 446  Q
    ||||| || ||||| || |||||||||| ||||||||||||| ||||||||||| ||||| ||| || | |||||||| ||||| || ||||| ||||||    
T  1514317 cagtaaaactgattctgtctccaaaatttattctacttgaagctaggatttgtagctttttattatataattgatttttacacacaaatttattgttcaa 1514416  T
Q  447 ctc 449  Q
    |||    
T  1514417 ctc 1514419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 349 - 424
Target Start/End: Complemental strand, 31362310 - 31362239
Alignment:
Q  349 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 424  Q
    ||||||||||||||||||||| ||||||||||    |||||||| ||||||| |||||||||||||| ||||||||    
T  31362310 gtagaattgattttgcctccataattgattct----gaagttagaatttgtagcttttgattctagaattgatttt 31362239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 262 - 510
Target Start/End: Complemental strand, 2099873 - 2099625
Alignment:
Q  262 atgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacacgtctgattgttgtccagtagaattgattt 361  Q
    ||||||||||||  ||||||||||   | |||||||| ||||||| ||||||||||| ||| ||       || |||||| |||| |||||||||||||     
T  2099873 atgtttggttcc--ttctagaggagttagaattgattctggaggtgtagaattgattatgactt-------gtttgattgatgtcgagtagaattgattg 2099783  T
Q  362 tgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgcttt------- 454  Q
    |  ||||| |||||||| || |||||| |  ||||||||  ||||| || |||| ||||||||||||||||| ||||||| |||||||  |||           
T  2099782 t--ctccagaattgattgtaattgaagctgagatttgtagattttggttatagaattgattttcacacataaatttatagctcaactcattttttatatg 2099685  T
Q  455 ----tatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattctcc 510  Q
        ||||||||||||| |||| |||| ||| ||| ||||||| ||||||||||||||||    
T  2099684 aatgtatccaaacacaaatcacttttactcaaaattacttttaaccaaaatcaattctcc 2099625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 371 - 456
Target Start/End: Complemental strand, 7790729 - 7790644
Alignment:
Q  371 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 456  Q
    ||||||||||||||||||||| ||||||||  ||| ||||||| | |||||||| ||||| || ||||| ||||||||| ||||||    
T  7790729 aattgattctacttgaagttatgatttgtagatttagattctataattgatttttacacacaaatttattgttcaactcactttta 7790644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 339 - 456
Target Start/End: Complemental strand, 47322025 - 47321909
Alignment:
Q  339 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 438  Q
    |||||||| ||||||||||||| ||| || | |||||||| ||||||||| ||| ||||| |  |||| |||||||| |||||||||| ||| || ||||    
T  47322025 ttgttgtcgagtagaattgattctgcttctataattgattatacttgaagctagaatttgca-gttttaattctagaattgattttcatacacaaattta 47321927  T
Q  439 tagttcaactcgctttta 456  Q
    |||||||| || ||||||    
T  47321926 tagttcaattcactttta 47321909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 360 - 424
Target Start/End: Complemental strand, 48549110 - 48549046
Alignment:
Q  360 tttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 424  Q
    ||||||||||||||||||||||||||||| ||| | ||||| ||| |||||||||| ||||||||    
T  48549110 tttgcctccaaaattgattctacttgaagctagaaattgtagcttctgattctagaattgatttt 48549046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 339 - 441
Target Start/End: Complemental strand, 34387812 - 34387710
Alignment:
Q  339 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 438  Q
    |||||||  ||||||| |||| ||| || || |||||||| ||||||||||| ||| ||| | |||||||||||| | |||||||||||||| || ||||    
T  34387812 ttgttgttgagtagaaatgatcttgtcttcataattgattttacttgaagttgggaattgcagcttttgattctataattgattttcacacacaaattta 34387713  T
Q  439 tag 441  Q
    |||    
T  34387712 tag 34387710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 353 - 467
Target Start/End: Original strand, 50571264 - 50571377
Alignment:
Q  353 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgct 452  Q
    ||||||||||  || || ||||||||||||||||||||||||||||||  |||| ||||||||  |||| |||| ||| ||  ||||||||||| ||  |    
T  50571264 aattgattttatcttcagaattgattctacttgaagttaggatttgtagttttttattctagaactgatgttcagacacaaagttatagttcaattc-at 50571362  T
Q  453 tttatccaaacacaa 467  Q
    | |||||||||||||    
T  50571363 tatatccaaacacaa 50571377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 348 - 449
Target Start/End: Original strand, 3416055 - 3416156
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 447  Q
    |||||||||||||  || || |||||||||| ||||| |||||| ||||||||  |||| ||| |||| |||||||| ||||| || ||||||||| |||    
T  3416055 agtagaattgattacgcatctaaaattgattatacttaaagttaagatttgtagttttttattttagaattgatttttacacacaaatttatagtttaac 3416154  T
Q  448 tc 449  Q
    ||    
T  3416155 tc 3416156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 257 - 435
Target Start/End: Complemental strand, 36780311 - 36780139
Alignment:
Q  257 tgtatatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacacgtctgattgttgtccagtagaatt 356  Q
    |||||||||||| ||  |||| |||||| |||| |||||||| ||||||| ||||||||||| |||  |       || || |||||||| ||| | |||    
T  36780311 tgtatatgtttgattttacttttagagggaccataattgattatggaggtgtagaattgattttgatat-------gtttggttgttgtcgagttgtatt 36780219  T
Q  357 gattttgcctccaaaattgattctacttgaagttagga-tttgtaccttttgattctagagttgattttcacacataatt 435  Q
     |||||  || ||||||  ||||||||||||||||||| |||||| ||||||||| |||| ||||||||| ||| |||||    
T  36780218 aattttatcttcaaaatgaattctacttgaagttaggattttgtagcttttgattatagaattgattttcgcacgtaatt 36780139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 374 - 456
Target Start/End: Complemental strand, 30850483 - 30850401
Alignment:
Q  374 tgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 456  Q
    ||||||||||||||  |||||||||||  |||| ||| |||| |||||||| ||| | || ||||||||||||||| ||||||    
T  30850483 tgattctacttgaaactaggatttgtagtttttaattttagaattgattttaacatacaaatttatagttcaactcactttta 30850401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 336 - 444
Target Start/End: Complemental strand, 34721959 - 34721854
Alignment:
Q  336 tgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatt 435  Q
    ||||||||||  | || ||||||||||||||  | ||||||||||   ||||||||||||||||   |||| |||||| | |||||||||||||| || |    
T  34721959 tgattgttgttaaatataattgattttgcctttagaattgattct---tgaagttaggatttgttgttttttattctataattgattttcacacacaaat 34721863  T
Q  436 ttatagttc 444  Q
    |||||||||    
T  34721862 ttatagttc 34721854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 348 - 446
Target Start/End: Complemental strand, 50569753 - 50569655
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 446  Q
    ||||||||||||||| |||| |||||| || || ||||||  |||||| |||| ||||||| |||| | |||| ||||||| | || ||||||||||||    
T  50569753 agtagaattgattttacctcaaaaattaatgctgcttgaaactaggatctgtaacttttgaatctataattgaatttcacaaacaaatttatagttcaa 50569655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 348 - 430
Target Start/End: Complemental strand, 51500939 - 51500862
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 430  Q
    ||||||||||||||| |||||||      |||||||||||  ||||||||||| |||||||||||||| |||||||| |||||    
T  51500939 agtagaattgattttacctccaag-----ttctacttgaacctaggatttgtagcttttgattctagaattgatttttacaca 51500862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 386 - 507
Target Start/End: Original strand, 4887718 - 4887837
Alignment:
Q  386 aagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgcttttatccaaacacaattcacctttagtcagaat 485  Q
    |||||| |||||||| |  |||||| |||| |||||||||||||| || ||||||||| ||||  |||| || ||||||||| |||| ||| |||| |||    
T  4887718 aagttaagatttgtaaccattgatt-tagaattgattttcacacacaaatttatagttaaacttacttt-attcaaacacaaatcacttttggtcaaaat 4887815  T
Q  486 cacttttacccaaaatcaattc 507  Q
     | ||||| |||||||||||||    
T  4887816 tatttttagccaaaatcaattc 4887837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 448
Target Start/End: Complemental strand, 28287423 - 28287346
Alignment:
Q  371 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 448  Q
    ||||| ||||||||||||  |||||||||| ||||||||| |||| |||||||| ||||  || ||||| ||||||||    
T  28287423 aattggttctacttgaagcaaggatttgtagcttttgattttagaattgattttaacactcaaatttattgttcaact 28287346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 353 - 429
Target Start/End: Complemental strand, 10325043 - 10324967
Alignment:
Q  353 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 429  Q
    |||| |||||||||| | |||||| ||||||||||| ||| | ||||| |||||||||||| | |||||||| ||||    
T  10325043 aattaattttgcctctagaattgagtctacttgaagatagaaattgtagcttttgattctataattgatttttacac 10324967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 339 - 430
Target Start/End: Original strand, 3909827 - 3909918
Alignment:
Q  339 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 430  Q
    |||||||| |||| || | ||||||| | |||||| |||||  |||||||||||||| ||||  |||| ||| |||| ||||||||||||||    
T  3909827 ttgttgtcaagtataactcattttgctttcaaaatcgattcagcttgaagttaggatatgtagattttcattatagaattgattttcacaca 3909918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 256 - 318
Target Start/End: Complemental strand, 15478196 - 15478134
Alignment:
Q  256 ttgtatatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 318  Q
    |||| ||||||||||||||||| | ||||| ||||| |||||||| | ||| |||||||||||    
T  15478196 ttgtgtatgtttggttccacttttggaggagccaaacttgattttagcggtgtagaattgatt 15478134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 358 - 440
Target Start/End: Original strand, 33733954 - 33734036
Alignment:
Q  358 attttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttata 440  Q
    |||||| || ||||||||||| || || ||||||| |||| || |||||||||| ||  |||||||| |||||||| ||||||    
T  33733954 attttgtcttcaaaattgattgtatttaaagttagaatttttaacttttgattcgagcattgatttttacacataaatttata 33734036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 401
Target Start/End: Original strand, 5268194 - 5268247
Alignment:
Q  349 gtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtac 401  Q
    |||||||| ||||||||||||||||||||||| ||| |||| ||| ||||||||    
T  5268194 gtagaattaattttgcctccaaaattgattctaactcgaagctagaatttgtac 5268247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 8130853 - 8130910
Alignment:
Q  261 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 318  Q
    ||||||||||||||||||| ||||| |||||||||||| |  | || |||||||||||    
T  8130853 tatgtttggttccacttctggaggagccaaaattgattctaaaagtgtagaattgatt 8130910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 442
Target Start/End: Complemental strand, 15986326 - 15986237
Alignment:
Q  353 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 442  Q
    |||| |||||||||||| |||||||| || |||||  ||||||||  |  |||| |||||||| ||||| |||||||| || ||||||||    
T  15986326 aattaattttgcctccagaattgattatagttgaaactaggatttcaagttttttattctagaattgatattcacacacaaatttatagt 15986237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 456
Target Start/End: Original strand, 34915088 - 34915149
Alignment:
Q  395 tttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 456  Q
    |||||| |||||||||||||| |||||| | |||||  |||||||| |||||||| ||||||    
T  34915088 tttgtagcttttgattctagaattgattctaacacaccattttataattcaactcactttta 34915149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 322
Target Start/End: Complemental strand, 45660938 - 45660878
Alignment:
Q  261 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctga 322  Q
    ||||||| ||||||||||| ||||  |||||||||| |||||||||  ||||||||||||||    
T  45660938 tatgtttcgttccacttctggaggggccaaaattga-tttggaggtgaagaattgattctga 45660878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 348 - 397
Target Start/End: Original strand, 47053385 - 47053438
Alignment:
Q  348 agtagaattgattttgcctccaaa----attgattctacttgaagttaggattt 397  Q
    |||||||||||||||||||||| |    |||||||||| |||||||||||||||    
T  47053385 agtagaattgattttgcctccagaattgattgattctatttgaagttaggattt 47053438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 5e-18; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 353 - 456
Target Start/End: Original strand, 40491558 - 40491661
Alignment:
Q  353 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgct 452  Q
    |||||||||||||| || |||||| |||||||||||||| | |||||| |||||||||||||| |||| ||| ||||| || |||| |||| ||||| ||    
T  40491558 aattgattttgccttcagaattgactctacttgaagttaagttttgtagcttttgattctagaattgacttttacacacaaatttaaagtttaactcact 40491657  T
Q  453 ttta 456  Q
    ||||    
T  40491658 ttta 40491661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 348 - 455
Target Start/End: Complemental strand, 41386925 - 41386818
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 447  Q
    |||| |||||||||  ||| || |||||||||||||||||| ||||||||||| ||||| |||||||| ||||| || ||||| || |||||| ||||||    
T  41386925 agtataattgatttcaccttcagaattgattctacttgaagctaggatttgtagcttttaattctagaattgatatttacacacaaatttataattcaac 41386826  T
Q  448 tcgctttt 455  Q
    || |||||    
T  41386825 tcactttt 41386818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 353 - 430
Target Start/End: Complemental strand, 15903635 - 15903558
Alignment:
Q  353 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 430  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||  ||  | ||||||||||||||    
T  15903635 aattgattttgcctccaaaattgattatacttgaagttgggatttgtagcttttgaagcttcaattgattttcacaca 15903558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 336 - 446
Target Start/End: Original strand, 35772221 - 35772331
Alignment:
Q  336 tgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatt 435  Q
    ||||||||||  | |||||||| || || |||||||||| ||||||||| || ||| ||||||||  |||||||| |||| |||||||||||| |||| |    
T  35772221 tgattgttgtagaatagaattggttctgtctccaaaatttattctacttaaaattaagatttgtagtttttgattttagaattgattttcacaaataaat 35772320  T
Q  436 ttatagttcaa 446  Q
    ||||| |||||    
T  35772321 ttataattcaa 35772331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 348 - 429
Target Start/End: Original strand, 27571837 - 27571918
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 429  Q
    |||| |||||||||| |||| | |||||||||||||||||||||| | ||| | |||||||||||||| |||||||| ||||    
T  27571837 agtataattgattttacctcaagaattgattctacttgaagttagaaattggagcttttgattctagaattgattttaacac 27571918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 336 - 428
Target Start/End: Original strand, 22195827 - 22195919
Alignment:
Q  336 tgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcaca 428  Q
    ||||| ||||| ||||||||||||| || |  ||||||||||| ||||| ||| || |||||||| |||||||||||| | ||||||||||||    
T  22195827 tgattattgtcgagtagaattgattatgtcctcaaaattgattttactttaagctatgatttgtaacttttgattctaaaattgattttcaca 22195919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 350 - 429
Target Start/End: Complemental strand, 28725160 - 28725081
Alignment:
Q  350 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 429  Q
    |||||||||||  |||||||| ||||||| ||||||||| ||| ||||||| |||||||||||| | |||||| ||||||    
T  28725160 tagaattgattcagcctccaatattgattatacttgaagctagaatttgtagcttttgattctataattgattctcacac 28725081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 348 - 429
Target Start/End: Complemental strand, 5489956 - 5489875
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 429  Q
    ||||||||| ||||||||||||||||||||||||||||| | ||| | ||| | ||||||||| || | |||||||| ||||    
T  5489956 agtagaattaattttgcctccaaaattgattctacttgatgctagaaattggagcttttgattatataattgattttaacac 5489875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 348 - 405
Target Start/End: Original strand, 36270955 - 36271012
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttt 405  Q
    |||||||||||||||||||| | |||| ||||||||||||||| ||||||||| ||||    
T  36270955 agtagaattgattttgcctctagaatttattctacttgaagttgggatttgtagcttt 36271012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 348 - 408
Target Start/End: Original strand, 40422767 - 40422828
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttga 408  Q
    |||||||||||||||||||| | |||||||||| |||||||||||||||||||  |||||||    
T  40422767 agtagaattgattttgcctcaagaattgattctaacttgaagttaggatttgtggcttttga 40422828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 348 - 424
Target Start/End: Complemental strand, 44856917 - 44856843
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 424  Q
    ||||||||||||||| |||||||||||||| |||||||||  || ||||| || | |||||||||||| ||||||||    
T  44856917 agtagaattgattttccctccaaaattgatactacttgaa--tatgatttataacatttgattctagaattgatttt 44856843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 349 - 429
Target Start/End: Complemental strand, 30182404 - 30182325
Alignment:
Q  349 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 429  Q
    |||||||||||||  ||||||||||||||||||||||||| ||  | ||||| |||||||||||||| || ||||| ||||    
T  30182404 gtagaattgatttc-cctccaaaattgattctacttgaagctaaaaattgtagcttttgattctagaattaatttttacac 30182325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 46325570 - 46325627
Alignment:
Q  261 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 318  Q
    ||||||||||| ||||||||||| ||||||| || |||||||| || |||||||||||    
T  46325570 tatgtttggtttcacttctagagaaaccaaatttaattttggatgtgtagaattgatt 46325627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 353 - 457
Target Start/End: Original strand, 25156176 - 25156284
Alignment:
Q  353 aattgattttgcctccaaaattgattctacttgaagttaggatttgtac----cttttgattctagagttgattttcacacataattttatagttcaact 448  Q
    |||||||||| |||| |||||||||||  ||| ||||||| ||||||||     |||| |||||||| |||||||| |||||||| || |||  ||||||    
T  25156176 aattgatttttcctctaaaattgattcatcttaaagttagaatttgtacgtagttttttattctagaattgatttttacacataaattaataaatcaact 25156275  T
Q  449 cgcttttat 457  Q
    | |||||||    
T  25156276 cacttttat 25156284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 45004997 - 45005035
Alignment:
Q  350 tagaattgattttgcctccaaaattgattctacttgaag 388  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  45004997 tagaattgattttgccttcagaattgattctacttgaag 45005035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 17111855 - 17111896
Alignment:
Q  371 aattgattctacttgaagttaggatttgtaccttttgattct 412  Q
    |||||||||||||||||| || |||||||| |||||||||||    
T  17111855 aattgattctacttgaagctatgatttgtagcttttgattct 17111896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 456
Target Start/End: Complemental strand, 38123753 - 38123668
Alignment:
Q  371 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 456  Q
    |||||||||||||||||| ||| | ||||| ||| | |||||||| |||||||| ||||  || ||||| | ||||||| ||||||    
T  38123753 aattgattctacttgaagctagaaattgtagcttctaattctagaattgatttttacactcaaatttattggtcaactcactttta 38123668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 353 - 429
Target Start/End: Original strand, 1410942 - 1411018
Alignment:
Q  353 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 429  Q
    |||| |||||||||  | ||||||||||| |||||||||  |||||||  ||||| || |||| |||||||||||||    
T  1410942 aattaattttgcctttagaattgattctatttgaagttataatttgtagattttgtttttagaattgattttcacac 1411018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 474 - 514
Target Start/End: Original strand, 22198194 - 22198234
Alignment:
Q  474 tttagtcagaatcacttttacccaaaatcaattctccccac 514  Q
    |||||||||||| ||||||| |||||||||||||| |||||    
T  22198194 tttagtcagaattacttttaaccaaaatcaattcttcccac 22198234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 474 - 514
Target Start/End: Complemental strand, 22239627 - 22239587
Alignment:
Q  474 tttagtcagaatcacttttacccaaaatcaattctccccac 514  Q
    |||||||||||| ||||||| |||||||||||||| |||||    
T  22239627 tttagtcagaattacttttaaccaaaatcaattcttcccac 22239587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 336 - 446
Target Start/End: Complemental strand, 40736659 - 40736550
Alignment:
Q  336 tgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatt 435  Q
    ||||||||||| |||| |||||||||||| ||| ||||||||||||||||||  ||  ||||||  |||||||||||||| || ||||||||||| || |    
T  40736659 tgattgttgtcgagtaaaattgattttgcatccgaaattgattctacttgaaactataatttgtcgcttttgattctaga-ttaattttcacacacaaat 40736561  T
Q  436 ttatagttcaa 446  Q
    ||||| |||||    
T  40736560 ttataattcaa 40736550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 353 - 430
Target Start/End: Complemental strand, 25359679 - 25359602
Alignment:
Q  353 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 430  Q
    |||||||| |||||||| |||||||||||||||||||||| |||||||  |||| |||||| | ||||||||||||||    
T  25359679 aattgattctgcctccagaattgattctacttgaagttagaatttgtagttttttattctataattgattttcacaca 25359602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 339 - 427
Target Start/End: Original strand, 54596784 - 54596872
Alignment:
Q  339 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcac 427  Q
    ||||| || ||||||||||||| ||||||||||| ||||| || |||||||||| ||||||| ||||| ||| |||| |||||||||||    
T  54596784 ttgttttcaagtagaattgattctgcctccaaaaatgattttatttgaagttagaatttgtaacttttaattttagaattgattttcac 54596872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 259 - 322
Target Start/End: Complemental strand, 52141437 - 52141374
Alignment:
Q  259 tatatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctga 322  Q
    |||||||||||||||||||||||||| |||| |||||||||| ||||| |||||| ||||||||    
T  52141437 tatatgtttggttccacttctagagggaccataattgatttttgaggtgtagaatagattctga 52141374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 348 - 449
Target Start/End: Complemental strand, 32523451 - 32523349
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttg-aagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 446  Q
    |||| ||| ||||||||||||| ||||  ||||||||| ||||||||||||||| |||||||||||| | |||||||| ||||| || |||| |||| ||    
T  32523451 agtaaaatagattttgcctccataattatttctacttggaagttaggatttgtagcttttgattctaaaattgatttttacacacaaatttagagtttaa 32523352  T
Q  447 ctc 449  Q
    |||    
T  32523351 ctc 32523349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 1290676 - 1290733
Alignment:
Q  261 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 318  Q
    ||||||||||||||||||||||||||| |||||||||| | ||||| |||||||||||    
T  1290676 tatgtttggttccacttctagaggaactaaaattgattctagaggtgtagaattgatt 1290733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 371 - 456
Target Start/End: Original strand, 52364049 - 52364134
Alignment:
Q  371 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 456  Q
    ||||| |||||||||||| || ||||| || |||||||||||| | |||||||||| |||||| |||| |||||||||| ||||||    
T  52364049 aattgtttctacttgaagctatgatttatagcttttgattctataattgattttcaaacataaatttacagttcaactcactttta 52364134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 348 - 412
Target Start/End: Complemental strand, 7717431 - 7717367
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattct 412  Q
    |||||||||||||||||||||| |||||||||||||||||| ||| | ||||| ||| |||||||    
T  7717431 agtagaattgattttgcctccagaattgattctacttgaagctagaaattgtagcttctgattct 7717367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 348 - 457
Target Start/End: Original strand, 35058336 - 35058446
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac-ataattttatagttcaa 446  Q
    |||||||||||||||||||| | ||||||||||||||| || ||| | ||  | |||||||||||||| |||||||| ||||   ||| |||| ||||||    
T  35058336 agtagaattgattttgcctcaagaattgattctacttggagctagaaattcgagcttttgattctagaattgattttaacactcaaatattattgttcaa 35058435  T
Q  447 ctcgcttttat 457  Q
    ||| |||||||    
T  35058436 ctcacttttat 35058446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 353 - 429
Target Start/End: Complemental strand, 37335139 - 37335063
Alignment:
Q  353 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 429  Q
    ||||||||||||||| | |||||||| |||| |||||||| | | ||| |||||||||||||| |||||||| ||||    
T  37335139 aattgattttgcctcgagaattgattttactagaagttagaaatcgtagcttttgattctagaattgatttttacac 37335063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 349 - 449
Target Start/End: Original strand, 44771670 - 44771770
Alignment:
Q  349 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 448  Q
    ||||||||| ||||||||||  |||||||||||| | ||  ||| ||||||| |||||||||||| | |||||||| |||||| | |||  |||||||||    
T  44771670 gtagaattggttttgcctccggaattgattctacctaaatctagaatttgtagcttttgattctaaaattgatttttacacattaatttgaagttcaact 44771769  T
Q  449 c 449  Q
    |    
T  44771770 c 44771770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 348 - 415
Target Start/End: Complemental strand, 1441491 - 1441424
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctaga 415  Q
    |||||||||||||||| ||| | ||| || ||||||||||  ||||||||||| ||||||||||||||    
T  1441491 agtagaattgattttgtctctataatcgactctacttgaaactaggatttgtagcttttgattctaga 1441424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 351 - 446
Target Start/End: Complemental strand, 35264518 - 35264423
Alignment:
Q  351 agaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 446  Q
    |||||||||| ||||||||||  ||||||||||||||  ||| | ||  | |||||||||||||| |||||||| |||| ||| ||||| ||||||    
T  35264518 agaattgattctgcctccaaatatgattctacttgaaactagaaattagagcttttgattctagaattgattttaacacttaaatttattgttcaa 35264423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 261 - 318
Target Start/End: Complemental strand, 3845302 - 3845245
Alignment:
Q  261 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 318  Q
    ||||||||||||||||| | ||| |||||||||||||| | ||||| |||||||||||    
T  3845302 tatgtttggttccacttttggagtaaccaaaattgattctagaggtgtagaattgatt 3845245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 52363960 - 52364017
Alignment:
Q  261 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 318  Q
    ||||||||||||||||| |||||| ||||||||||||| | ||||| || ||||||||    
T  52363960 tatgtttggttccacttttagagggaccaaaattgattatagaggtgtataattgatt 52364017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 348 - 456
Target Start/End: Original strand, 36302158 - 36302266
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 447  Q
    ||||||||||||||||||| || | ||||||||| |||||| |||   ||| |  |||||||| |||| ||||||||  ||| ||| ||||| |||||||    
T  36302158 agtagaattgattttgccttcagagttgattctatttgaagctagagattggagattttgattttagaattgattttagcacttaaatttattgttcaac 36302257  T
Q  448 tcgctttta 456  Q
    || ||||||    
T  36302258 tcactttta 36302266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 349 - 388
Target Start/End: Complemental strand, 30301108 - 30301069
Alignment:
Q  349 gtagaattgattttgcctccaaaattgattctacttgaag 388  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  30301108 gtagaattgattttgcctccaaaattgactctatttgaag 30301069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 426
Target Start/End: Original strand, 35058065 - 35058120
Alignment:
Q  371 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttca 426  Q
    |||||||||||| ||||| ||||||||||| ||||| ||| |||| ||||||||||    
T  35058065 aattgattctacatgaagctaggatttgtagcttttaattatagaattgattttca 35058120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 348 - 407
Target Start/End: Complemental strand, 41115472 - 41115413
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttg 407  Q
    ||||||||||||||||| |  | |||||||||||||||||| ||| ||||||| ||||||    
T  41115472 agtagaattgattttgcttgtagaattgattctacttgaagctagaatttgtagcttttg 41115413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 348 - 379
Target Start/End: Complemental strand, 48410922 - 48410891
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattc 379  Q
    ||||||||||||||||||||||||||||||||    
T  48410922 agtagaattgattttgcctccaaaattgattc 48410891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 394 - 456
Target Start/End: Complemental strand, 31708303 - 31708241
Alignment:
Q  394 atttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 456  Q
    ||||||| |||||||||||||| |||||| | ||||| || |||||| |||||||| ||||||    
T  31708303 atttgtagcttttgattctagaattgattctaacacacaaatttataattcaactcactttta 31708241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 358 - 456
Target Start/End: Complemental strand, 40147950 - 40147852
Alignment:
Q  358 attttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 456  Q
    |||||| || || |||||||||||||| ||| ||| ||||| | |||||||||||||| |||||||  |||| | | |||||  |||||||| ||||||    
T  40147950 attttgtcttcagaattgattctacttcaagctagaatttggagcttttgattctagaattgatttcaacacttgaatttatcattcaactcactttta 40147852  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 348 - 446
Target Start/End: Complemental strand, 47356355 - 47356257
Alignment:
Q  348 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 446  Q
    |||| ||||||||||| ||  | ||| ||||| ||||||||||| ||||| ||   ||||||| |||| |||||||| |||||||| |||| |||||||    
T  47356355 agtataattgattttgtctttagaatcgattccacttgaagttaagatttatagtctttgattatagaattgatttttacacataaatttaaagttcaa 47356257  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 388
Target Start/End: Original strand, 38022410 - 38022451
Alignment:
Q  348 agtagaattgatttt-gcctccaaaattgattctacttgaag 388  Q
    ||||||||||||||| |||||||||||||||||||| |||||    
T  38022410 agtagaattgatttttgcctccaaaattgattctacctgaag 38022451  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 429
Target Start/End: Complemental strand, 44958712 - 44958635
Alignment:
Q  352 gaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 429  Q
    |||||||||||||||||| | ||||||||||| || | ||| | ||| | ||||||||||||||  ||||||| ||||    
T  44958712 gaattgattttgcctccagagttgattctactcgatgctagaaattggagcttttgattctagaaatgattttaacac 44958635  T

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Target: scaffold0314 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 17322 - 17378
Alignment:
Q  262 atgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 318  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||    
T  17322 atgtttggttccacttctagagtaaccaaaattgattctggaggtgtagaattgatt 17378  T

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Target: scaffold0197 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 261 - 322
Target Start/End: Complemental strand, 31605 - 31544
Alignment:
Q  261 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctga 322  Q
    ||||||| |||||||||||||||| ||||||||||||||| ||  | || ||||||||||||    
T  31605 tatgtttagttccacttctagagggaccaaaattgattttagacctgtaaaattgattctga 31544  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 352 - 424
Target Start/End: Complemental strand, 23699 - 23627
Alignment:
Q  352 gaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 424  Q
    |||||||||||| ||||| || | ||||||  ||||| ||||||||||| ||||||| ||||||  |||||||    
T  23699 gaattgattttgtctccataaataattctaactgaagctaggatttgtagcttttgaatctagacgtgatttt 23627  T

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