View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_52 (Length: 374)
Name: NF11980_low_52
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_52 |
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| [»] scaffold0432 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 9805012 - 9804675
Alignment:
| Q |
1 |
tgatgtttgaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattacct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
9805012 |
tgatgtttgaaaccactcacataaaagacaaccacaaatttgagaaagacatgcaaaatgatctagataaaaaaa-atatgaaaaaagtttggattacct |
9804914 |
T |
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| Q |
101 |
tttttgcccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataaccattcatgagaggttggcaacggcgactggtcgatgtcg |
200 |
Q |
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| T |
9804913 |
ttcttgcccaaataatgaaacgaggttgaactttcatgaaaactccatcaaaagagataaccattcatgagaggttggcaacggcgactgatcgatgtcg |
9804814 |
T |
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| Q |
201 |
atctcagtgaagtttcatggttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| || |
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| T |
9804813 |
atctcagtgaagtttcatggttcttttttctgatcgatgtcgatctcagtgatggtgcttggagagaggttggcaacagcgattgagggagaaaattgtg |
9804714 |
T |
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| Q |
301 |
tttagggtttcaagagaatgagaaatgaggatgggagga |
339 |
Q |
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| T |
9804713 |
tttagggtttcaagagaatgagaaatgaggatgggagga |
9804675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 9817937 - 9817777
Alignment:
| Q |
1 |
tgatgtttgaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattacct |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||| || || ||||||||| |||||||| |
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| T |
9817937 |
tgatgtttgaaatcactcacataaaagacaaccacaaatcagagaaagacatgcaaaatgatctagataaaaaa--atgtggaaaaagttttgattacct |
9817840 |
T |
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| Q |
101 |
tttttgcccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataacca |
163 |
Q |
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| T |
9817839 |
tttttgcccaaataatggaacgaggttgaagtttcatgaaaattccatcaaaagagataacca |
9817777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 224 - 367
Target Start/End: Complemental strand, 9817693 - 9817550
Alignment:
| Q |
224 |
ttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgaga |
323 |
Q |
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|||||||||||||||||||||||||| ||| || |||||||||||||| |||||||| |||||| ||||||| ||||||||||||||||| ||||||| |
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| T |
9817693 |
ttttttctgatcgatgtcgatctcagcaatgttggtaggagagaggttgtcaacggcggatgagggggaaaattgtgtttagggtttcaagataatgaga |
9817594 |
T |
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| Q |
324 |
aatgaggatgggaggattattttgtttgattgatgtccatctca |
367 |
Q |
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| T |
9817593 |
aatgaggatgggaggattcttttgtttgattgatgtcgatctca |
9817550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 221 - 360
Target Start/End: Complemental strand, 9817577 - 9817438
Alignment:
| Q |
221 |
ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg |
320 |
Q |
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||||||| | |||| ||||||||||||| |||||| ||||||||||||||||| | ||| |||||||||||| ||||||||||||||||| |||||| |
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| T |
9817577 |
ttcttttgtttgattgatgtcgatctcacctatggtggtaggagagaggttggcagcagcggctgagggagaaaactttgtttagggtttcaaaagaatg |
9817478 |
T |
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| Q |
321 |
agaaatgaggatgggaggattattttgtttgattgatgtc |
360 |
Q |
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| T |
9817477 |
agaaatgaggattggaggattcttttgattgatcgatgtc |
9817438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 231 - 339
Target Start/End: Complemental strand, 9817448 - 9817341
Alignment:
| Q |
231 |
tgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgagaaatgagg |
330 |
Q |
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||||||||||||||| ||| ||||||| || |||||||||||||| ||||| |||||||||||| | ||||||||||||| |||||||||||||||||| |
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| T |
9817448 |
tgatcgatgtcgatc-cagcgatggtggtatgagagaggttggcagcggcggctgagggagaaaactgtgtttagggtttctagagaatgagaaatgagg |
9817350 |
T |
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| Q |
331 |
atgggagga |
339 |
Q |
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| T |
9817349 |
atgggagga |
9817341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 11946 - 11788
Alignment:
| Q |
1 |
tgatgtttgaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaa-gtttggattacc |
99 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||| || |||| || |||||||| ||| ||||||| |
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| T |
11946 |
tgatgtttgaaatcactcacataaaagacaaccacaaatcagataaagacatgcaaaattatatagataaaaca--atgtgaaaaaaagttaagattacc |
11849 |
T |
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| Q |
100 |
ttttttgcccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataa |
160 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11848 |
ttttatgcccaattaatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataa |
11788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 217 - 367
Target Start/End: Complemental strand, 11708 - 11558
Alignment:
| Q |
217 |
atggttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagag |
316 |
Q |
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|||||||||||||| |||||||| |||||||| ||||||| || |||||||||||| | ||| ||||| || |||| ||||||| | | |||||||| |
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| T |
11708 |
atggttcttttttccaatcgatgttgatctcagcgatggtggtatgagagaggttggtagcgggagttgagagataaaactttgttttgagattcaagag |
11609 |
T |
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| Q |
317 |
aatgagaaatgaggatgggaggattattttgtttgattgatgtccatctca |
367 |
Q |
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|||| ||| |||||||||||||||| ||||||||||| ||||| |||||| |
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| T |
11608 |
aatgggaagtgaggatgggaggattcttttgtttgatcaatgtcgatctca |
11558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 221 - 339
Target Start/End: Complemental strand, 11585 - 11467
Alignment:
| Q |
221 |
ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg |
320 |
Q |
| |
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||||||| | ||||| ||||||||||||| | | ||| ||| ||||||||||||| || || ||||||||||| | ||| | || ||||| |||||| |
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| T |
11585 |
ttcttttgtttgatcaatgtcgatctcagcggtagtggtagaagagaggttggcagcgacggccgagggagaaaactgtgtgtgggatttcatgagaata |
11486 |
T |
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| Q |
321 |
agaaatgaggatgggagga |
339 |
Q |
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| T |
11485 |
agaaatgaggatgggagga |
11467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 42778749 - 42778900
Alignment:
| Q |
9 |
gaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattaccttttttgcc |
108 |
Q |
| |
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||||||||||| ||||||| ||||||||||| | |||||| | |||||||||||| |||| || |||||||||||||||||||||||||||| |
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| T |
42778749 |
gaaaccactcatataaaaggcaaccacaaatcaaagaaaggcgtgcaaaatgatctagataaagaa--atgtgaaaaaagtttggattaccttttttgct |
42778846 |
T |
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| Q |
109 |
caaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataacca |
163 |
Q |
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||| | |||||||||||||||| || |||||||||||| |||||||||||||||| |
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| T |
42778847 |
caattgatgaaacgaggttgaa-ttgcatgaaaactccgtcaaaagagataacca |
42778900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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