View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_54 (Length: 363)
Name: NF11980_low_54
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 35 - 358
Target Start/End: Original strand, 31068727 - 31069055
Alignment:
| Q |
35 |
tcatatttacttgtgtcaaactagctacttggtttggaaacatatatatggtagcaaattataatcttgtaacaggtgctactttttatttatgatgaaa |
134 |
Q |
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| T |
31068727 |
tcatatttacttgtgtcaaactactttgtttgtttc---acatatatgtcgtagctaattataatcttgtaacaggtgctacttctt-tttatgatgaaa |
31068822 |
T |
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| Q |
135 |
atgaagctttaaaacgaaatataaaccatt---gtaatgt---attaa----gtatatttttacaattgttgcaaacttcataagaaaataataatgatg |
224 |
Q |
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| T |
31068823 |
atgaagctttaaaacgaaatattaaccattattgtaatgttgtattaaaatagtatatttttacaattgttgcaaacttcataagaaaaaaa-agtgatg |
31068921 |
T |
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| Q |
225 |
aacacaggtagatatcttactgaggacaaagagagaagctatccatacaccagttttagtacgaagaggaacttttcctttacaatccacagaaccatca |
324 |
Q |
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| T |
31068922 |
aactaaagtagatatcttacttaggacaaagagagaagctatccatacaccagttttagcacgaaggggaactttgcctttacaatccacagaaccatca |
31069021 |
T |
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| Q |
325 |
taaacccatttctcatgctccctttcttctctct |
358 |
Q |
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| T |
31069022 |
taaacccatttctcatgctccctttcttctctct |
31069055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 193 - 356
Target Start/End: Original strand, 31085583 - 31085744
Alignment:
| Q |
193 |
gttgcaaacttcataagaaaataataatgatgaacacaggtagatatcttactgaggacaaagagagaagctatccatacaccagttttagtacgaagag |
292 |
Q |
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| T |
31085583 |
gttgcaaactttataagaaaaaaa--atgatgaacacaggtagatatcttactgaggacaaagagagaagctatccatacaccagttttagcacgaagag |
31085680 |
T |
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| Q |
293 |
gaacttttcctttacaatccacagaaccatcataaacccatttctcatgctccctttcttctct |
356 |
Q |
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| T |
31085681 |
gaacttttcctttacaatccacagaaccatcataaacccatttctcttgttcactttcttctct |
31085744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 237 - 335
Target Start/End: Original strand, 31059520 - 31059618
Alignment:
| Q |
237 |
tatcttactgaggacaaagagagaagctatccatacaccagttttagtacgaagaggaacttttcctttacaatccacagaaccatcataaacccattt |
335 |
Q |
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| T |
31059520 |
tatcttactgatgacaaagaaagaagctttccatgcaccagtggaagcacgaagaggaactcttcctttataatcaaaagaaccatcatacacccattt |
31059618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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