View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11980_low_55 (Length: 353)

Name: NF11980_low_55
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11980_low_55
NF11980_low_55
[»] chr1 (13 HSPs)
chr1 (19-344)||(30367118-30367443)
chr1 (22-298)||(13205359-13205632)
chr1 (22-344)||(13069207-13069526)
chr1 (22-298)||(13008088-13008361)
chr1 (22-298)||(13101888-13102161)
chr1 (22-277)||(13214397-13214649)
chr1 (28-293)||(13162426-13162691)
chr1 (28-294)||(13130732-13130998)
chr1 (40-282)||(13095315-13095557)
chr1 (39-143)||(13005874-13005978)
chr1 (255-300)||(13067444-13067489)
chr1 (243-296)||(14708331-14708384)
chr1 (167-275)||(13080038-13080146)
[»] chr6 (2 HSPs)
chr6 (20-336)||(31376359-31376676)
chr6 (19-344)||(31385291-31385619)


Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 344
Target Start/End: Original strand, 30367118 - 30367443
Alignment:
Q  19 ttcaccttagttttgaaatgtcatggaggaacgtttcgatttgaaggaccctggttcacaaacacaagctttatcgctactgctgatccaatgaacgtta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30367118 ttcaccttagttttgaaatgtcatggaggaacgtttcgatttgaaggaccctgattcacaaacacaagctttatcgctactgctgatccaatgaacgtta 30367217  T
Q  119 actacatcgcaagcaagaattttggcaactacggtagggggtctaataacttccaagaaatttttgaattttttggaggtggtattgtcaattctgattc 218  Q
    || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30367218 accacatcgcaagcaagaattttggcaactacgggagggggtctaataacttccaagaaatttttgaattttttggaggtggtattgtcaattctgattc 30367317  T
Q  219 ccacgtatggaaagagaagagggcaatgtttcattcaattctcaaaaggaaaagcttcaagaacttgttccaacaaactagtnnnnnnnngctggagaaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||    
T  30367318 ccacgtatggaaagagaagagggcaatgtttcattcaattctcaaaaggaaaagcttcaagaacttgttccaacaaactagtaaaaaaaagctggagaaa 30367417  T
Q  319 ttcctactaccatttattaatgatgt 344  Q
    ||||||||||||||||||||||||||    
T  30367418 ttcctactaccatttattaatgatgt 30367443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 22 - 298
Target Start/End: Complemental strand, 13205632 - 13205359
Alignment:
Q  22 accttagttttgaaatgtcatggaggaacgtttcgatttgaaggaccctggttcacaaacacaagctttatcgctactgctgatccaatgaacgttaact 121  Q
    |||||| |||||||| || |||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||   ||||||| |||| ||| ||     
T  13205632 accttaattttgaaacgtaatggaggaacatttcgatttgaaggagcctggttcacaaacacaagctttatcgttacaagtgatccattgaatgttgacc 13205533  T
Q  122 acatcgcaagcaagaattttggcaactacggtagggggtctaataacttccaagaaatttttgaattttttggaggtggtattgtcaattctgattccca 221  Q
    |||| ||| |||||||||||||||||||||| |||||||| ||   |||| ||||||||||||| |||||||||| ||||||| | |||||| ||||| |    
T  13205532 acattgcaggcaagaattttggcaactacggaagggggtccaa---cttcaaagaaatttttgatttttttggagatggtattttaaattctaattccaa 13205436  T
Q  222 cgtatggaaagagaagagggcaatgtttcattcaattctcaaaaggaaaagcttcaagaacttgttccaacaaacta 298  Q
    |||||||||| |  ||||| |||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||    
T  13205435 cgtatggaaacaacagaggacaatgtttcattcatttctcaaaaggaaaaccttcaagaacttcttccaacaaacta 13205359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 22 - 344
Target Start/End: Original strand, 13069207 - 13069526
Alignment:
Q  22 accttagttttgaaatgtcatggaggaacgtttcgatttgaaggaccctggttcacaaacacaagctttatcgctactgctgatccaatgaacgttaact 121  Q
    |||||| ||||||||  |||||||||||||||| |||||| |||| ||||||||||||||||||||||||| | |||   |||||||||||| ||| |      
T  13069207 accttaattttgaaacatcatggaggaacgtttagatttggaggagcctggttcacaaacacaagctttattggtaccagtgatccaatgaatgttgaac 13069306  T
Q  122 acatcgcaagcaagaattttggcaactacggtagggggtctaataacttccaagaaatttttgaattttttggaggtggtattgtcaattctgattccca 221  Q
    |||| || ||||||||||||||||||||||| |||||||| ||   |||| ||||||||||||| |||||||||| ||||||| | |||||| |||||||    
T  13069307 acattgcgagcaagaattttggcaactacggaagggggtccaa---cttcaaagaaatttttgatttttttggagatggtattttaaattctaattccca 13069403  T
Q  222 cgtatggaaagagaagagggcaatgtttcattcaattctcaaaaggaaaagcttcaagaacttgttccaacaaactagtnnnnnnnngctggagaaattc 321  Q
    |||||||||| |  ||||| |||||||||||||| |||| |||||||||| |||||||||||| |||||||||||||          ||||||||| | |    
T  13069404 cgtatggaaacaacagaggacaatgtttcattcatttcttaaaaggaaaaccttcaagaacttcttccaacaaactatgaagaaaaagctggagaactac 13069503  T
Q  322 ctactaccatttattaatgatgt 344  Q
    |||||||||||| ||||||||||    
T  13069504 ctactaccatttcttaatgatgt 13069526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 22 - 298
Target Start/End: Complemental strand, 13008361 - 13008088
Alignment:
Q  22 accttagttttgaaatgtcatggaggaacgtttcgatttgaaggaccctggttcacaaacacaagctttatcgctactgctgatccaatgaacgttaact 121  Q
    |||||| ||||||||  |||||||||||| ||||||||||||||| | ||||||||||||||||||||||||| |||   |||||| ||||| ||| |      
T  13008361 accttatttttgaaacatcatggaggaacatttcgatttgaaggagcttggttcacaaacacaagctttatcggtaccagtgatccgatgaatgttgatc 13008262  T
Q  122 acatcgcaagcaagaattttggcaactacggtagggggtctaataacttccaagaaatttttgaattttttggaggtggtattgtcaattctgattccca 221  Q
    ||||||| ||||||||||||||||||||||| ||||||||    |||||| ||||||||||||| |||||||||| ||||||| | ||||||  ||||||    
T  13008261 acatcgcgagcaagaattttggcaactacggaagggggtc---caacttcaaagaaatttttgatttttttggagatggtattttaaattctagttccca 13008165  T
Q  222 cgtatggaaagagaagagggcaatgtttcattcaattctcaaaaggaaaagcttcaagaacttgttccaacaaacta 298  Q
    | |||||||| |  || |  |||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||    
T  13008164 catatggaaacaacagcgaacaatgtttcattcatttctcaaaaggaaaaccttcaagaactttttccaacaaacta 13008088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 22 - 298
Target Start/End: Complemental strand, 13102161 - 13101888
Alignment:
Q  22 accttagttttgaaatgtcatggaggaacgtttcgatttgaaggaccctggttcacaaacacaagctttatcgctactgctgatccaatgaacgttaact 121  Q
    ||||||||||| |||  |||||||||||||||||||||||||||| ||||||||||||||||  ||||||||| |||   |||||||||||| |||||      
T  13102161 accttagttttaaaacatcatggaggaacgtttcgatttgaaggagcctggttcacaaacactggctttatcggtaccagtgatccaatgaatgttaatc 13102062  T
Q  122 acatcgcaagcaagaattttggcaactacggtagggggtctaataacttccaagaaatttttgaattttttggaggtggtattgtcaattctgattccca 221  Q
    |||| || |||||||||||| |||| ||||| ||||||||    ||||||||||| |||||| | ||||||  |||| ||||| | |||||| || || |    
T  13102061 acattgcgagcaagaattttagcaattacggaagggggtc---caacttccaagatattttttatttttttcaaggtagtattttaaattctcatcccga 13101965  T
Q  222 cgtatggaaagagaagagggcaatgtttcattcaattctcaaaaggaaaagcttcaagaacttgttccaacaaacta 298  Q
    |||||||||| |  |||||||||||||| |||||  |||||||||||||| ||||| ||| || |||||||||||||    
T  13101964 cgtatggaaacaacagagggcaatgtttaattcatatctcaaaaggaaaaccttcatgaatttcttccaacaaacta 13101888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 22 - 277
Target Start/End: Complemental strand, 13214649 - 13214397
Alignment:
Q  22 accttagttttgaaatgtcatggaggaacgtttcgatttgaaggaccctggttcacaaacacaagctttatcgctactgctgatccaatgaacgttaact 121  Q
    |||||||||||||||  ||||||||||| ||||||||||||  || ||||||||||||||||||||||||||| |||   |||||||||||| |||||      
T  13214649 accttagttttgaaacatcatggaggaatgtttcgatttgagtgagcctggttcacaaacacaagctttatcggtaccagtgatccaatgaatgttaatc 13214550  T
Q  122 acatcgcaagcaagaattttggcaactacggtagggggtctaataacttccaagaaatttttgaattttttggaggtggtattgtcaattctgattccca 221  Q
    |||| || ||||||||||||||||| ||||| |||||  |    ||||||||||| |||||| | |||||||||||| ||||| | |||||| ||||| |    
T  13214549 acattgcgagcaagaattttggcaattacggaaggggccc---caacttccaagatattttttatttttttggaggtagtattttaaattctaattccga 13214453  T
Q  222 cgtatggaaagagaagagggcaatgtttcattcaattctcaaaaggaaaagcttca 277  Q
    |||||| ||| |  ||||| |||||||| ||||| |||||||||| |||| |||||    
T  13214452 cgtatgaaaacaacagaggacaatgtttaattcatttctcaaaagaaaaatcttca 13214397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 28 - 293
Target Start/End: Complemental strand, 13162691 - 13162426
Alignment:
Q  28 gttttgaaatgtcatggaggaacgtttcgatttgaaggaccctggttcacaaacacaagctttatcgctactgctgatccaatgaacgttaactacatcg 127  Q
    ||||||||  || |||||||||| | ||||||| ||||||||||||||||||||||||||||| ||| |   ||||||||||||||||| |  ||||||     
T  13162691 gttttgaagcgtaatggaggaacttatcgatttcaaggaccctggttcacaaacacaagctttgtcggtctagctgatccaatgaacgtgacatacatca 13162592  T
Q  128 caagcaagaattttggcaactacggtagggggtctaataacttccaagaaatttttgaattttttggaggtggtattgtcaattctgattcccac---gt 224  Q
    |||  |||||||||||||||||||  |  |||||    || ||||| || ||||||||| || |||||||| ||||| |||||||||||||| ||   ||    
T  13162591 caaagaagaattttggcaactacgcgaaagggtc---aaaattccatgatatttttgaagttcttggaggtagtattttcaattctgattccaacgatgt 13162495  T
Q  225 atggaaagagaagagggcaatgtttcattcaattctcaaaaggaaaagcttcaagaacttgttccaaca 293  Q
    ||||||| || ||| | |||||||||||| | ||||   ||||||||||||||||||| ||||||||||    
T  13162494 atggaaacaggagaagacaatgtttcatttagttcttggaaggaaaagcttcaagaacatgttccaaca 13162426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 28 - 294
Target Start/End: Complemental strand, 13130998 - 13130732
Alignment:
Q  28 gttttgaaatgtcatggaggaacgtttcgatttgaaggaccctggttcacaaacacaagctttatcgctactgctgatccaatgaacgttaactacatcg 127  Q
    ||||||||  || |||||||||| | ||||||| |||| ||||||||||||||||||||||||||||||   ||||||| ||||||||| |||||||||     
T  13130998 gttttgaagcgttatggaggaacttgtcgatttcaagggccctggttcacaaacacaagctttatcgctctagctgatcaaatgaacgtgaactacatca 13130899  T
Q  128 caagcaagaattttggcaactacggtagggggtctaataacttccaagaaatttttgaattttttggaggtggtattgtcaattctgattcccac---gt 224  Q
    |||  ||||||| |||||||||| | |  |||||    || |  || || ||||||||| || |||||||| ||||| |||||||||||||| ||   ||    
T  13130898 caaagaagaattgtggcaactacaggaaagggtc---aaaatatcatgacatttttgaagttcttggaggtagtattttcaattctgattccgacgatgt 13130802  T
Q  225 atggaaagagaagagggcaatgtttcattcaattctcaaaaggaaaagcttcaagaacttgttccaacaa 294  Q
    ||||||| |  ||| | |||||||||||| | ||||   ||||||||||||||||||| ||||| |||||    
T  13130801 atggaaacaagagaagacaatgtttcatttagttcttggaaggaaaagcttcaagaacatgttcgaacaa 13130732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 40 - 282
Target Start/End: Complemental strand, 13095557 - 13095315
Alignment:
Q  40 catggaggaacgtttcgatttgaaggaccctggttcacaaacacaagctttatcgctactgctgatccaatgaacgttaactacatcgcaagcaagaatt 139  Q
    ||||||||||| |||| | || |||| |||||||||||  ||| ||||||||||| |   |||||||||||||||||  |||||||| |||  ||||||     
T  13095557 catggaggaacttttctaattaaagggccctggttcactgacataagctttatcggtctagctgatccaatgaacgtggactacatcacaaagaagaatg 13095458  T
Q  140 ttggcaactacggtagggggtctaataacttccaagaaatttttgaattttttggaggtggtattgtcaattctgattcccacg---tatggaaagagaa 236  Q
    ||||||||||||  |  ||||| ||    ||||| || ||||||||| || |||||||| ||||| |||||||||||||| |||   |||||||| || |    
T  13095457 ttggcaactacgcgaaagggtcaaaa---ttccatgatatttttgaagttcttggaggtagtattttcaattctgattccgacgatgtatggaaacagga 13095361  T
Q  237 gagggcaatgtttcattcaattctcaaaaggaaaagcttcaagaac 282  Q
    || | |||||||||||| ||||||   |||||||||||||||||||    
T  13095360 gaagacaatgtttcatttaattcttggaaggaaaagcttcaagaac 13095315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 39 - 143
Target Start/End: Complemental strand, 13005978 - 13005874
Alignment:
Q  39 tcatggaggaacgtttcgatttgaaggaccctggttcacaaacacaagctttatcgctactgctgatccaatgaacgttaactacatcgcaagcaagaat 138  Q
    |||||||||||| |||||||| ||||| ||||| | |||||| |||||||||||||| ||  ||||||||||||||||| || ||||| |||||||||||    
T  13005978 tcatggaggaacttttcgattcgaagggccctgatacacaaatacaagctttatcgcgaccactgatccaatgaacgttgaccacatcacaagcaagaat 13005879  T
Q  139 tttgg 143  Q
    |||||    
T  13005878 tttgg 13005874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 300
Target Start/End: Original strand, 13067444 - 13067489
Alignment:
Q  255 aattctcaaaaggaaaagcttcaagaacttgttccaacaaactagt 300  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||    
T  13067444 aattctcaaaaggaaaagattcaagaacttgttccaacatactagt 13067489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 296
Target Start/End: Complemental strand, 14708384 - 14708331
Alignment:
Q  243 aatgtttcattcaattctcaaaaggaaaagcttcaagaacttgttccaacaaac 296  Q
    ||||||||||| |||| |||||| |||||||||||||||||| |||||||||||    
T  14708384 aatgtttcatttaattatcaaaaagaaaagcttcaagaacttcttccaacaaac 14708331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 275
Target Start/End: Original strand, 13080038 - 13080146
Alignment:
Q  167 acttccaagaaatttttgaattttttggaggtggtattgtcaattctgattcccacgtatggaaagagaagagggcaatgtttcattcaattctcaaaag 266  Q
    ||||||| |||||||||||| || |||| | ||||||| ||||||  |||||  | | ||||||| |  |||| ||| ||||||||||| | ||||||||    
T  13080038 acttccatgaaatttttgaaattcttggtgttggtattttcaatttagattctaatgaatggaaacaagagagagcattgtttcattcattgctcaaaag 13080137  T
Q  267 gaaaagctt 275  Q
    |||||||||    
T  13080138 gaaaagctt 13080146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 336
Target Start/End: Complemental strand, 31376676 - 31376359
Alignment:
Q  20 tcaccttagttttgaaatgtcatggaggaacgtttcgatttgaaggaccctggttcacaaacacaagctttatcgctactgctgatccaatgaacgttaa 119  Q
    ||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  31376676 tcaccttagttttgaaaggtcatgaaggaatgtttcgatttgaaggaccctggttcacaaacacaagctttatcgccactgctgatccaattaacgttaa 31376577  T
Q  120 ctacatcgcaagcaagaattttggcaactacggtagggggtctaataacttccaagaaatttttgaattttttggaggtggtattgtcaattctgattcc 219  Q
    | ||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31376576 ccacatcgcaagcaagaattttggcaactacgggagggggtctatcaacttccaagaaatttttgaattttttggaggtggtattgtcaattctgattcc 31376477  T
Q  220 cacgtatggaaagagaagagggcaatgtttcattcaattctcaaaaggaaaagcttcaagaacttgttccaacaaactagt-nnnnnnnngctggagaaa 318  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||         ||||||||||    
T  31376476 cacgtatggaaagagaagaggacaatgtttcattcaattctcaaaaggaaaagcttcaagaacttgtttcaacaaactagtcaaaaaaaagctggagaaa 31376377  T
Q  319 ttcctactaccatttatt 336  Q
    ||||||||||||||||||    
T  31376376 ttcctactaccatttatt 31376359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 344
Target Start/End: Original strand, 31385291 - 31385619
Alignment:
Q  19 ttcaccttagttttgaaatgtcatggaggaacgtttcgatttgaaggaccctggttcacaaacacaagctttatcgctactgctgatccaatgaacgtta 118  Q
    ||||| ||||||| |||| |||||||||||||||||| ||| |||| | |||||||||||||||||||||||||||||||| | || ||||| |||||||    
T  31385291 ttcactttagtttcgaaacgtcatggaggaacgtttcaattcgaagtatcctggttcacaaacacaagctttatcgctactacagacccaatcaacgtta 31385390  T
Q  119 actacatcgcaagcaagaatt----ttggcaactacggtagggggtctaataacttccaagaaatttttgaattttttggaggtggtattgtcaattctg 214  Q
    |||||||||| | ||||||||    | || |||||| | |||| |||||    |||||||||| | ||| | || ||| |||||||||||||||||||||    
T  31385391 actacatcgccaacaagaattaatttcggtaactactggagggagtctag---cttccaagaattgttttatttctttcgaggtggtattgtcaattctg 31385487  T
Q  215 attcccacgtatggaaagagaagagggcaatgtttcattcaattctcaaaaggaaaagcttcaagaacttgttccaacaaactagt--nnnnnnnngctg 312  Q
    |||||||| |||||||| |||| ||| ||||||||||||||||||| |||| |||||||||||||||| ||||||| |||||||||          ||||    
T  31385488 attcccacatatggaaatagaaaaggacaatgtttcattcaattctgaaaacgaaaagcttcaagaacatgttccatcaaactagtaaaaaaaaaagctg 31385587  T
Q  313 gagaaattcctactaccatttattaatgatgt 344  Q
    ||||||||||||||||||||||||||||||||    
T  31385588 gagaaattcctactaccatttattaatgatgt 31385619  T

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