View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11980_low_56 (Length: 347)
Name: NF11980_low_56
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_56 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 13 - 331
Target Start/End: Original strand, 47479211 - 47479530
Alignment:
| Q |
13 |
agataacacattactaacagagattagtgttatttccaagctgagccaaagaactagcttccaagcataacatattgggatttagttgcttcaacttttt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47479211 |
agataacacattactaacagagattagtgttatttccaagctgagccaaagaactagcttccaagcataacatattgggatttagttgcttcaacttttt |
47479310 |
T |
|
| Q |
113 |
gtagtccacctgtcaaattaaaaacaagagataaattattttatggtcctcaattttaaactctaaagtaaatgcaatcttaaatagaaaccataaacag |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
47479311 |
gtagtccacctgtcaaattaaaaacaagagataaattattttatggtcctcaattttaaactctaaagtaaatgcaatcttaaatagaaaccataaatag |
47479410 |
T |
|
| Q |
213 |
tatcatcgcgg-nnnnnnnnnctttcaaaaacagtatcatcatgttatggctgattattctaatgaattcacatgatatttatagcattgcagccgtaca |
311 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47479411 |
tatcatcgcggttttttttttctttcaaaaacagtatcatcatgttatggctgattattctaatgaattcacatgatatttatagcattgcagccgtaca |
47479510 |
T |
|
| Q |
312 |
agcataacattggctaaaca |
331 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
47479511 |
agcataacattggctaaaca |
47479530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 29452755 - 29452940
Alignment:
| Q |
18 |
acacattactaacagagattagtgttatttccaagctgagccaaagaactagcttccaagcataacatattgggatttagttgcttcaactttttgtagt |
117 |
Q |
| |
|
|||||||| ||||| |||| |||||| ||| ||| |||||| |||| |||| |||||||||| || ||| | ||| || | || || |||||| || |
|
|
| T |
29452755 |
acacattatcaacagggattcgtgttacttcgaagtggagccagagaattagcctccaagcatagcaaattagaattcag---cctccacattttgttgt |
29452851 |
T |
|
| Q |
118 |
ccacctgtcaaattaaaaacaagagataaattattttatggtcctcaatttt-aaactctaaagtaaatgcaatcttaaatagaaaccataa |
208 |
Q |
| |
|
||||||||||||| ||||||| || | | |||||| ||||| ||||| ||| ||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29452852 |
ccacctgtcaaat-aaaaacatgaca--atttatttcatggttctcaaatttcaaattctaaagtaaatgcaatcttacatagaaaccataa |
29452940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 29435702 - 29435763
Alignment:
| Q |
155 |
atggtcctcaattttaaactctaaagtaaatgcaatcttaaatagaaaccataaacagtatc |
216 |
Q |
| |
|
||||| |||||||| ||| ||||||| |||||||||||||||||||||||| ||| |||||| |
|
|
| T |
29435702 |
atggttctcaatttcaaattctaaagcaaatgcaatcttaaatagaaaccagaaatagtatc |
29435763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 53428618 - 53428671
Alignment:
| Q |
269 |
ttctaatgaattcacatgatatttatagcattgcagccgtacaagcataacatt |
322 |
Q |
| |
|
||||||||||| |||||| |||||||| ||| | ||| |||||||||||||||| |
|
|
| T |
53428618 |
ttctaatgaatacacatggtatttatatcatagtagcagtacaagcataacatt |
53428671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University