View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11980_low_57 (Length: 342)
Name: NF11980_low_57
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_57 |
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| [»] chr1 (5 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0010 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 8436196 - 8436537
Alignment:
| Q |
1 |
atggctaaaccagaaggatgaagaacaagatcgtgcacgataatcaaaactatctctgaaaatgttctgatcatctccaccgctagaacaatgttgatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8436196 |
atggctaaaccagaaggatgaagaacaagatcgtgcacgataatcaaaactatctctgaaaatgttctgatcatctccaccgctagaacaatgttgatgt |
8436295 |
T |
|
| Q |
101 |
tctcaagttaatttttgtaggccaataattgccacataggattcaagaacactccctcattttcactacaatgcatttaagttcttaatttgttttatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8436296 |
tctcaagttaatttttgtaggccaataattgccacataggattcaagatcactccctcattttcactacaatgcatttaagttcttaatttgttttatat |
8436395 |
T |
|
| Q |
201 |
ggggtctaccataaacttcatatagtatattttcttttcatttcctcttttctctctcgttgtttgttttgtctgacatagcactgcgcaagaacgtgtt |
300 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8436396 |
ggggtctaccataaacttcacatagtatattttcttttcatttcctcttttctctctcgttgtttgttttgtctgacatagcactgcacaagaacgtgtt |
8436495 |
T |
|
| Q |
301 |
cccctgcgagaacatttctccaacctttccttccatgtcatt |
342 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
8436496 |
cccctgcgagaacagttctccaacctgtccttccatgtcatt |
8436537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 72 - 342
Target Start/End: Original strand, 10510870 - 10511139
Alignment:
| Q |
72 |
catctccaccgctagaacaatgttgatgttctcaagttaatttttgtaggccaataattgccacataggattcaagaacactccctcattttcactacaa |
171 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||| ||||||||||||||| |
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| T |
10510870 |
catctcaaccgctagaacaatgttgatgttctcaagttaatttttgtgggccaataattgccacatagaattcaagaactttcc-tcattttcactacaa |
10510968 |
T |
|
| Q |
172 |
tgcatttaagttcttaatttgttttatatggggtctaccataaacttcatatagtatattttcttttcatttcctcttttctctctcgttg--tttgttt |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||| ||| |||||||||||||| ||||||||| ||||||| ||| ||||||| |
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| T |
10510969 |
tgcatttaagttcttaatttgttttatatggggtccaccatgaacttcacatattatattttcttttcctttcctcttccctctctccttgtttttgttt |
10511068 |
T |
|
| Q |
270 |
tgtctgacatagcactgcgcaagaacgtgttcccctgcgagaacatttctccaacctttccttccatgtcatt |
342 |
Q |
| |
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| ||| ||| | |||| |||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |
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|
| T |
10511069 |
tctctaacacaacact--gcaagaacgtgttccctcacgagaacagttctccaacctgtccttccatgtcatt |
10511139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 13430869 - 13430777
Alignment:
| Q |
166 |
ctacaatgcatttaagttcttaatttgttttatatggggtctaccataaacttcatatagtatattttcttttcatttcctcttttctctctc |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||| |||||||||||||| ||||||||| |||||||| |
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| T |
13430869 |
ctacaatgcatttaagttcttaatttgttttatatggggtccaccatgaacttcacatattatattttcttttcctttcctcttctctctctc |
13430777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 25001270 - 25001196
Alignment:
| Q |
182 |
ttcttaatttgttttatatggggtctaccataaacttcatatagtatattttcttttcatttcctcttttctctc |
256 |
Q |
| |
|
|||||| ||||||||||||| |||| ||||| ||||||| ||| ||||| ||| |||| ||||||||| |||||| |
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|
| T |
25001270 |
ttcttagtttgttttatatgaggtccaccatgaacttcacatattatatattcatttcctttcctcttctctctc |
25001196 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 25001389 - 25001324
Alignment:
| Q |
84 |
tagaacaatgttgatgttctcaagttaatttttgtaggccaataattgccacataggattcaagaa |
149 |
Q |
| |
|
||||| ||| |||||||||| ||| |||||||| | ||||||||||| |||||||| ||||||||| |
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|
| T |
25001389 |
tagaaaaatattgatgttcttaaggtaatttttttgggccaataattaccacatagaattcaagaa |
25001324 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 83 - 342
Target Start/End: Complemental strand, 43377350 - 43377091
Alignment:
| Q |
83 |
ctagaacaatgttgatgttctcaagttaatttttgtaggccaataattgccacataggattcaagaacactccctcattttcactacaatgcatttaagt |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| | ||||||||| ||||||||||| ||||| |
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| T |
43377350 |
ctagaacaatgttgatgttctcaagttaatttttgtgggccaataattgccacataggatttaagaac-tttcctcatttttgctacaatgcatctaagt |
43377252 |
T |
|
| Q |
183 |
tcttaatttgttttatatggggtctaccataaacttcatatagtatattttcttttcatttcctcttttctctctcgttg--tttgttttgtc-tgacat |
279 |
Q |
| |
|
||||||||| |||||||||||||| ||||| ||||| ||| |||||||| ||||| ||| ||||| |||||||| ||| |||||||| || | |||| |
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|
| T |
43377251 |
tcttaatttattttatatggggtccaccatgaactttccatattatattttattttccttttctcttctctctctccttgtttttgttttctcttaacat |
43377152 |
T |
|
| Q |
280 |
agcactgcgcaagaacgtgttcccctgcgagaacatttctccaacctttccttccatgtcatt |
342 |
Q |
| |
|
|||||| ||||||||||||| ||| ||||||| ||||||||||| ||||||||||||||| |
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|
| T |
43377151 |
agcact--ccaagaacgtgttcacctacgagaacggttctccaacctgtccttccatgtcatt |
43377091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 82 - 228
Target Start/End: Complemental strand, 48757282 - 48757136
Alignment:
| Q |
82 |
gctagaacaatgttgatgttctcaagttaatttttgtaggccaataattgccacataggattcaagaacactccctcattttcactacaatgcatttaag |
181 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||| | |||||||||||||||| |||||||| |
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|
| T |
48757282 |
gctagaataatgttgatgttctcatgttaatttttgtgggccaataattgctacataggattcaagaacacttcttcattttcactacaattcatttaag |
48757183 |
T |
|
| Q |
182 |
ttcttaatttgttttatatggggtctaccataaacttcatatagtat |
228 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| ||||||| ||||||| |
|
|
| T |
48757182 |
ttcttaatttgttttatatgcggtccaccatgaacttcacatagtat |
48757136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 103 - 258
Target Start/End: Original strand, 152897 - 153051
Alignment:
| Q |
103 |
tcaagttaatttttgtaggccaataattgccacataggattcaagaacactccctcattttcactacaatgcatttaagttcttaatttgttttatatgg |
202 |
Q |
| |
|
|||||||||||||||| |||||| |||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
152897 |
tcaagttaatttttgtgggccaacaattgccatataggattcaagaactttcc-tcattttcactacaatgcatttaagttcttaatttgttttatatgg |
152995 |
T |
|
| Q |
203 |
ggtctaccataaacttcatatagtatattttcttttcatttcctcttttctctctc |
258 |
Q |
| |
|
|||| ||||| ||||||| ||| |||||||||||||| ||||||||| |||||||| |
|
|
| T |
152996 |
ggtccaccatgaacttcacatattatattttcttttcctttcctcttctctctctc |
153051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 342
Target Start/End: Original strand, 153094 - 153171
Alignment:
| Q |
263 |
tttgttttgtctgacatagcactgcgcaagaacgtgttcccctgcgagaacatttctccaacctttccttccatgtcatt |
342 |
Q |
| |
|
|||||||| ||||| | |||||||| ||||| |||||||||| ||||||| ||||||||||| | ||||||||||||| |
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|
| T |
153094 |
tttgttttctctgaaacagcactgc--aagaatgtgttcccctacgagaacggttctccaacctgtacttccatgtcatt |
153171 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 82 - 326
Target Start/End: Original strand, 43974831 - 43975078
Alignment:
| Q |
82 |
gctagaacaatgtt-gatgttctcaagttaatttttgtaggccaataattgccaca--taggattcaagaacactccctcattttcactacaa-tgcatt |
177 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||| ||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
43974831 |
gctagaacaatgtttgatattctcaagttaatttttgtgggccactaattaccacacataggatttaagaacactccctcattttcactacaattgcatt |
43974930 |
T |
|
| Q |
178 |
taagttcttaatttgttttatatggggtctaccataaacttcatatagtatattttcttttcatttcctcttttctctctc---gttgtttgttttgtct |
274 |
Q |
| |
|
|||||||||||||||||||||| || ||| ||||| ||||||| | ||||||||||||| ||||||||||| |||||| |||||||||||||||| |
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|
| T |
43974931 |
taagttcttaatttgttttatacggcgtccaccatgaacttcaca---tatattttctttttctttcctcttttatctctccttgttgtttgttttgtct |
43975027 |
T |
|
| Q |
275 |
gacatagcactgcgcaagaacgtgttcccctgcgagaacatttctccaacct |
326 |
Q |
| |
|
||||||||| |||||||| ||||||||| ||||| ||||||||||| |
|
|
| T |
43975028 |
cacatagcac-ctgcaagaacatgttcccctagaagaacggttctccaacct |
43975078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 85 - 230
Target Start/End: Complemental strand, 10227658 - 10227513
Alignment:
| Q |
85 |
agaacaatgttgatgttctcaagttaatttttgtaggccaataattgccacataggattc-aagaacactccctcattttcactacaatgcatttaagtt |
183 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||| |||||||||||||||||||| | || |||||| || ||||||||||| ||||||||||||||| |
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|
| T |
10227658 |
agaacaatattgatgttctcaatgtaatttttgtgggccaataattgccacatagaactctaagaactttca-tcattttcactgcaatgcatttaagtt |
10227560 |
T |
|
| Q |
184 |
cttaatttgttttatatggggtctaccataaacttcatatagtatat |
230 |
Q |
| |
|
|||| |||||||||||||||||| ||||| ||||||| ||| ||||| |
|
|
| T |
10227559 |
cttagtttgttttatatggggtccaccatgaacttcacatattatat |
10227513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 179
Target Start/End: Original strand, 33493464 - 33493554
Alignment:
| Q |
89 |
caatgttgatgttctcaagttaatttttgtaggccaataattgccacataggattcaagaacactccctcattttcactacaatgcattta |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| ||||||| ||| |||||||||||||||| |||||| |
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|
| T |
33493464 |
caatgttgatgttctcaagttaatttttgtgggccattaattgccacttaggattgaagaacaatccatcattttcactacaatacattta |
33493554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 90 - 181
Target Start/End: Original strand, 40701215 - 40701305
Alignment:
| Q |
90 |
aatgttgatgttctcaagttaatttttgtaggccaataattgccacataggattcaagaacactccctcattttcactacaatgcatttaag |
181 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||| ||| | |||||||||||||| |||||||||||| |
|
|
| T |
40701215 |
aatgttaatgttctcaagttaatttttgtgggccaataattaccacataggattcaaaaac-tttcctcattttcactaaaatgcatttaag |
40701305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 72 - 154
Target Start/End: Complemental strand, 29567687 - 29567607
Alignment:
| Q |
72 |
catctccaccgctagaacaatgttgatgttctcaagttaatttttgtaggccaataattgccacataggattcaagaacactc |
154 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||||| || |||| ||| ||||||| ||||||||||||||| |
|
|
| T |
29567687 |
catctccaatgctagaacaatgttgatgttc--aagttaatttttgtgggtcaatgattaccacataagattcaagaacactc |
29567607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 256
Target Start/End: Complemental strand, 42654176 - 42654077
Alignment:
| Q |
157 |
tcattttcactacaatgcatttaagttcttaatttgttttatatggggtctaccataaacttcatatagtatattttcttttcatttcctcttttctctc |
256 |
Q |
| |
|
||||||| |||||||| |||||||||| || |||| |||||||||| || ||||||||||||| ||| ||||| ||| |||| || |||||| |||||| |
|
|
| T |
42654176 |
tcatttttactacaatacatttaagtttgtagtttgatttatatgggatccaccataaacttcacatattatatattcatttccttccctcttctctctc |
42654077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 304
Target Start/End: Original strand, 37505656 - 37505726
Alignment:
| Q |
234 |
cttttcatttcctcttttctctctcgttg-tttgttttgtctgacatagcactgcgcaagaacgtgttcccc |
304 |
Q |
| |
|
|||||| |||||||||||||||||| ||| ||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
37505656 |
cttttcttttcctcttttctctctccttgctttgttttgtctgacatagaac-ctgcaagaacgtgttcccc |
37505726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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