View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_6 (Length: 661)
Name: NF11980_low_6
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 605; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 14 - 642
Target Start/End: Original strand, 49158961 - 49159589
Alignment:
| Q |
14 |
cagagaaaccacctgataataaatggaaacacacagaatacaatagtatatatacaaatgttaaagagcatcttaacaagaatacttgagagcatgttta |
113 |
Q |
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| T |
49158961 |
cagagaaaccacctgataataaatggaaacactcagaatacaatagtatatatacaaatgttaaagagcatcttaacaagaataattgagagcatgttta |
49159060 |
T |
|
| Q |
114 |
cttagcacatatatataccatgagcctttgcgacattgttgataagttccataataagcacagtttttcctacaccagcaccaccaaacaatccaatctt |
213 |
Q |
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| T |
49159061 |
cttagcacatatatataccatgagcctttgcgacattgttgataagttccataataagcacagtttttcctacaccagcaccaccaaacaatccaatctt |
49159160 |
T |
|
| Q |
214 |
tcctcctctttggtatggtgcaaggagatcaacaacctgtatgaagaaaatcatgtaagattggtaaaagacattagatatttgcagacgccaacatttg |
313 |
Q |
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| T |
49159161 |
tcctcctctttggtatggtgcaaggagatcaacaacctgtatgaagaaaatcatgtaagattggtaaaagacattagatatttgcagacaccaacatttg |
49159260 |
T |
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| Q |
314 |
ataaaatgagactgatgcatttgcaaataccttgataccagtcacaagaatttgttgttcggttgcttgttcaacaaaaagaggagcttctctatgaata |
413 |
Q |
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| T |
49159261 |
ataaaatgagactgatgcatttgcaaataccttgataccggtcacaagaatttgttgttcggttgcttgttcaacaaaaagaggagcttctctatgaata |
49159360 |
T |
|
| Q |
414 |
ggcaaaaaatgctcggtttctaaagcaatttacaaaatttatcatgagttgaaaaacattccatggaattgatagaaaaactttgttatagcaaatggac |
513 |
Q |
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| T |
49159361 |
ggcaaaaaatgctcggtttctaaagcaatttacaaaatttatcatgagttgaaaaacgttccatggaattgatagaaaaactttgttatagcaaatggac |
49159460 |
T |
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| Q |
514 |
ttaaaaaagattttgaggtttcttactaaagtcgcctttatgatcaataggttctccaataacattcatgatacgtccaagagtacacctgccaacggga |
613 |
Q |
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| T |
49159461 |
ttaaaaaagattttgagctttcttactaaagtcgcctttatgatcaataggttctccaataacattcatgatacgtccaagagtacacctgccaacggga |
49159560 |
T |
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| Q |
614 |
acctgaatggaattcacaagtatttagaa |
642 |
Q |
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| T |
49159561 |
acctgaatggaattcacaagtatttagaa |
49159589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 126 - 631
Target Start/End: Original strand, 49155009 - 49155510
Alignment:
| Q |
126 |
atataccatgagcctttgcgacattgttgataagttccataataagcacagtttttcctacaccagcaccaccaaacaatccaatctttcctcctctttg |
225 |
Q |
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| T |
49155009 |
atataccatgagccttagcaacattgttgataagttccataataagaacggtttttcctacaccagcaccaccaaacaacccaatcttccctcccctttg |
49155108 |
T |
|
| Q |
226 |
gtatggtgcaaggagatcaacaacctgtatgaagaaaatcatgtaagattggt-aaaagacattagatatttgcagacgccaac-atttgataaaatgag |
323 |
Q |
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| T |
49155109 |
gtatggtgcaagcaggtcaacaacctatatgaaaaaaatcaagcaaaattggtgtaaagtcattatatatttgcaca---caacgatttaaggaaatggg |
49155205 |
T |
|
| Q |
324 |
actgatgcatttgcaaataccttgataccagtcacaagaatttgttgttcggttgcttgttcaacaaaaagaggagcttctctatgaataggcaaaaaat |
423 |
Q |
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| T |
49155206 |
attgatgcatttacaattaccttgataccagtaacaaggatctgttgttcagttgcttgctcaacaaaagcaggagcttctctatgaataggcaaataat |
49155305 |
T |
|
| Q |
424 |
gctcggtttctaaagcaatttacaaaatttatcatgagttgaaaaacattccatggaattgatagaaaaactttgttatagcaaatggacttaaaaaaga |
523 |
Q |
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| T |
49155306 |
gctcggtaactaaagaaattcagaaaaattatcatcagttgaaaatca--ctatggaattgatagaaatactttattaaatcaattagact---attttt |
49155400 |
T |
|
| Q |
524 |
tttt--gaggtttcttactaaagtcgcctttatgatcaataggttctccaataacattcatgatacgtccaagagtacacctgccaacgggaacctgaat |
621 |
Q |
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| T |
49155401 |
ttttaagaggtttcttactgaattcgcctttatgatcaataggttctccaataacattcatgatacgtccaagggtagccctgccaacgggaacctaaat |
49155500 |
T |
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| Q |
622 |
ggaattcaca |
631 |
Q |
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| T |
49155501 |
gcaatacaca |
49155510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 158 - 237
Target Start/End: Complemental strand, 27959968 - 27959889
Alignment:
| Q |
158 |
agttccataataagcacagtttttcctacaccagcaccaccaaacaatccaatctttcctcctctttggtatggtgcaag |
237 |
Q |
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| T |
27959968 |
agttccatcataagtatacttttgcctaccccagcgcaaccaatcaacccaatatttcctcctctttggtatggtgcaag |
27959889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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