View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_60 (Length: 334)
Name: NF11980_low_60
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_60 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 43339435 - 43339117
Alignment:
| Q |
1 |
acacacagaatggttgttctctgatccaccaatctttcaaaaagagatattttccccgttttctactacttttttaacaacatcggaaaactaatttaat |
100 |
Q |
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| T |
43339435 |
acacacagaatggttgttctctgatccaccaatctttcaaaaagagatattttccccgttttctactacttttttaacaacatcggaaaactaatttaat |
43339336 |
T |
|
| Q |
101 |
tccaattcatcctttttaagcattaatcacaagtctcgccaccacataatctaaatacgagtattgaagaatatatggagtccaaatatcattgttgtat |
200 |
Q |
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| T |
43339335 |
tccaattcatcctttttaagcattaatcacaagtctcgccaccacataatctaaatacgagtattgaagaatatatggagtccaaatatcattgttgtat |
43339236 |
T |
|
| Q |
201 |
tatgtaaggcattttacgttattaaaattagtatatatccatatatagaatttcctgcttat-nnnnnnngtagtataaatttcacgtgaagaatatgaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
43339235 |
tatgtaaggcattttacgttattaaaattagtatatatccatatatagaatttcctgcttataaaaaaaagtagtataaatttcacgtgaagaatatgaa |
43339136 |
T |
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| Q |
300 |
atgattctaaagtgtgtgt |
318 |
Q |
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||||||||||||||||||| |
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| T |
43339135 |
atgattctaaagtgtgtgt |
43339117 |
T |
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