View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_61 (Length: 333)
Name: NF11980_low_61
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_61 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 7070160 - 7070476
Alignment:
| Q |
1 |
cttgtgaatttgaggaacagaagattgaaacttcaatgtatatggaaaatttgtgtctggttttgtgcttgccacttcacccttcaatttccagataaac |
100 |
Q |
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| T |
7070160 |
cttgtgaatttgaggaacagaagattgaaacttcaatgtatatggaaaatttgtgtctggttttgtgcttgcgacttcacccttaaatttccagataaac |
7070259 |
T |
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| Q |
101 |
aaaagacaaacaaaaaatgcacgaataatgtgcattgtggattttcctttgtctctctactctacataagatggccataacaaaatacaattagttaaag |
200 |
Q |
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| T |
7070260 |
aaaagacaaacaaaaaatgcacgattaatgtgcattgtggattttcctttgtctctctactctacataagatggccataacaaaatacaattagttaaag |
7070359 |
T |
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| Q |
201 |
agagaacttagaactataaagaaattaatgaaaatcaaattacaaccacattattgcttacatcagtttccttgaatgatttcacctatcgggtgatttg |
300 |
Q |
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| T |
7070360 |
agagaacttagaattataaagaaattaatgaaaatcaaattacaaccacattattgcttacatcagtttccttgaatgatttcacctatcgggtgatttg |
7070459 |
T |
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| Q |
301 |
aattgtatgcattatgt |
317 |
Q |
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| T |
7070460 |
aattgtatgcattatgt |
7070476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 7087234 - 7087412
Alignment:
| Q |
9 |
tttgaggaacagaagattgaaacttcaatgtatatggaaaatttgtgtctggttttgtgcttgccacttcacccttcaatttccagataaacaaaagaca |
108 |
Q |
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| T |
7087234 |
tttgaggaactgaacattgaaattccgatgaatatggacaatttgtgtctgatgttgggttttccacttcacctttcaatttcgacataaacaagagaca |
7087333 |
T |
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| Q |
109 |
aacaaaaaatgcacg---aataatgtgcattgtggattttcctttgtctctctactctacataagatggccataacaaaa |
185 |
Q |
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| T |
7087334 |
aacaaaaaatacaagattaatattgtgcattgtggatcttcctttgtgtctctactc-aaataagatagccacaacaaaa |
7087412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 7100923 - 7100966
Alignment:
| Q |
129 |
tgtgcattgtggattttcctttgtctctctactctacataagat |
172 |
Q |
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| T |
7100923 |
tgtgcattgtggttcttcctttgtctctctactctacataagat |
7100966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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