View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11980_low_62 (Length: 327)

Name: NF11980_low_62
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11980_low_62
NF11980_low_62
[»] chr8 (20 HSPs)
chr8 (1-327)||(27674593-27674916)
chr8 (1-133)||(27666732-27666865)
chr8 (225-327)||(40436732-40436834)
chr8 (225-327)||(9012521-9012623)
chr8 (225-327)||(28441764-28441866)
chr8 (245-313)||(3129349-3129417)
chr8 (232-324)||(15452355-15452447)
chr8 (225-327)||(44337043-44337145)
chr8 (229-314)||(14185570-14185655)
chr8 (235-327)||(24681773-24681866)
chr8 (233-327)||(12193148-12193240)
chr8 (233-327)||(12437576-12437668)
chr8 (231-327)||(4785541-4785637)
chr8 (225-325)||(12073908-12074005)
chr8 (250-327)||(1271453-1271530)
chr8 (235-327)||(22810874-22810969)
chr8 (226-327)||(12659955-12660055)
chr8 (228-327)||(41346208-41346307)
chr8 (235-327)||(11219260-11219353)
chr8 (225-293)||(28801865-28801933)
[»] chr4 (32 HSPs)
chr4 (225-327)||(5122067-5122169)
chr4 (225-327)||(48338638-48338740)
chr4 (228-327)||(18536346-18536445)
chr4 (226-327)||(46471722-46471823)
chr4 (230-327)||(32223000-32223095)
chr4 (225-327)||(3666755-3666857)
chr4 (230-327)||(4688980-4689077)
chr4 (231-327)||(41325696-41325792)
chr4 (231-327)||(21069357-21069455)
chr4 (245-327)||(41260423-41260505)
chr4 (226-327)||(48685046-48685148)
chr4 (235-327)||(27743505-27743598)
chr4 (226-321)||(48293122-48293214)
chr4 (225-327)||(6102182-6102283)
chr4 (225-327)||(35014569-35014671)
chr4 (226-327)||(14867062-14867163)
chr4 (225-314)||(36106170-36106259)
chr4 (248-327)||(20986717-20986796)
chr4 (226-293)||(45226668-45226735)
chr4 (247-324)||(18399340-18399417)
chr4 (225-302)||(48602221-48602298)
chr4 (225-309)||(49641127-49641211)
chr4 (225-287)||(25686187-25686248)
chr4 (226-311)||(1920280-1920364)
chr4 (250-314)||(4642766-4642830)
chr4 (235-314)||(8484978-8485057)
chr4 (272-323)||(41312362-41312413)
chr4 (232-327)||(7783873-7783969)
chr4 (250-327)||(35232982-35233059)
chr4 (252-312)||(28148087-28148147)
chr4 (226-327)||(40494706-40494809)
chr4 (225-269)||(42199085-42199129)
[»] chr7 (32 HSPs)
chr7 (226-327)||(30855391-30855492)
chr7 (245-327)||(8117968-8118049)
chr7 (226-325)||(23032977-23033075)
chr7 (232-319)||(43202716-43202803)
chr7 (225-327)||(524554-524656)
chr7 (235-326)||(27456631-27456723)
chr7 (228-327)||(11399420-11399518)
chr7 (225-327)||(6879783-6879885)
chr7 (225-327)||(48643082-48643183)
chr7 (230-314)||(40849156-40849240)
chr7 (259-327)||(47646447-47646515)
chr7 (225-327)||(30079262-30079364)
chr7 (228-314)||(35495705-35495790)
chr7 (236-324)||(27214880-27214968)
chr7 (248-327)||(1812797-1812876)
chr7 (228-311)||(17493092-17493174)
chr7 (228-311)||(17560040-17560122)
chr7 (225-312)||(26214806-26214893)
chr7 (232-327)||(36550767-36550861)
chr7 (225-324)||(46147505-46147604)
chr7 (225-326)||(16535435-16535536)
chr7 (225-326)||(16630126-16630227)
chr7 (226-293)||(7528921-7528986)
chr7 (235-314)||(11834163-11834242)
chr7 (260-319)||(16359561-16359620)
chr7 (247-317)||(29211311-29211380)
chr7 (226-279)||(23675673-23675726)
chr7 (245-314)||(23729686-23729755)
chr7 (247-324)||(26956159-26956236)
chr7 (227-268)||(49012346-49012387)
chr7 (283-327)||(23410904-23410948)
chr7 (231-327)||(31287463-31287559)
[»] chr1 (36 HSPs)
chr1 (227-327)||(36203135-36203235)
chr1 (230-327)||(44056033-44056130)
chr1 (225-324)||(35992286-35992385)
chr1 (230-324)||(35979963-35980057)
chr1 (225-327)||(8165230-8165331)
chr1 (225-322)||(17652040-17652137)
chr1 (231-327)||(6248374-6248470)
chr1 (231-327)||(26344734-26344830)
chr1 (225-312)||(10847228-10847315)
chr1 (248-327)||(50471417-50471495)
chr1 (245-327)||(9249776-9249858)
chr1 (226-327)||(17989340-17989441)
chr1 (231-327)||(25559705-25559801)
chr1 (231-327)||(52380420-52380516)
chr1 (245-327)||(21685238-21685321)
chr1 (226-277)||(9961921-9961972)
chr1 (225-327)||(9330693-9330795)
chr1 (225-327)||(11073057-11073158)
chr1 (225-327)||(19051416-19051518)
chr1 (225-327)||(23474789-23474889)
chr1 (248-327)||(6693789-6693866)
chr1 (248-327)||(40094852-40094929)
chr1 (226-269)||(29923054-29923097)
chr1 (225-291)||(32910092-32910158)
chr1 (225-314)||(32937762-32937854)
chr1 (231-327)||(34914432-34914525)
chr1 (225-314)||(52829103-52829192)
chr1 (231-327)||(12973868-12973964)
chr1 (245-293)||(50951758-50951806)
chr1 (244-327)||(15881881-15881963)
chr1 (272-323)||(39166890-39166941)
chr1 (227-314)||(41751516-41751603)
chr1 (245-327)||(25507192-25507273)
chr1 (248-326)||(27507199-27507277)
chr1 (279-327)||(3532712-3532760)
chr1 (233-285)||(11537101-11537153)
[»] scaffold0204 (2 HSPs)
scaffold0204 (225-327)||(26160-26262)
scaffold0204 (228-327)||(14822-14921)
[»] chr6 (15 HSPs)
chr6 (225-327)||(32190369-32190471)
chr6 (226-327)||(892029-892130)
chr6 (230-327)||(29048846-29048942)
chr6 (225-324)||(19134792-19134892)
chr6 (225-327)||(12108265-12108368)
chr6 (225-302)||(14564719-14564796)
chr6 (225-327)||(28633238-28633340)
chr6 (231-327)||(22414109-22414206)
chr6 (226-293)||(13531995-13532062)
chr6 (226-319)||(20500856-20500949)
chr6 (228-312)||(30752868-30752952)
chr6 (232-327)||(13092298-13092393)
chr6 (235-327)||(9686352-9686445)
chr6 (235-327)||(24644641-24644733)
chr6 (262-324)||(8064820-8064882)
[»] chr5 (33 HSPs)
chr5 (227-327)||(31075306-31075407)
chr5 (225-327)||(12378767-12378870)
chr5 (226-327)||(6633599-6633700)
chr5 (226-327)||(22553653-22553754)
chr5 (225-327)||(2796509-2796611)
chr5 (225-327)||(2802670-2802772)
chr5 (225-327)||(18432384-18432486)
chr5 (226-321)||(27571753-27571845)
chr5 (225-327)||(11402892-11402994)
chr5 (225-326)||(40331168-40331270)
chr5 (227-289)||(2589300-2589362)
chr5 (250-327)||(32721092-32721170)
chr5 (225-327)||(40692751-40692853)
chr5 (225-286)||(25715545-25715606)
chr5 (226-327)||(41805510-41805611)
chr5 (225-293)||(7591199-7591267)
chr5 (226-293)||(40109339-40109406)
chr5 (272-327)||(8542012-8542069)
chr5 (261-327)||(42920724-42920790)
chr5 (226-327)||(14652754-14652854)
chr5 (225-293)||(34881039-34881108)
chr5 (230-323)||(36568015-36568107)
chr5 (226-327)||(39052852-39052953)
chr5 (235-327)||(10090534-10090626)
chr5 (225-324)||(18845812-18845911)
chr5 (225-314)||(4414516-4414605)
chr5 (236-327)||(5175316-5175407)
chr5 (225-327)||(23418265-23418365)
chr5 (226-317)||(26690104-26690195)
chr5 (226-317)||(26959836-26959927)
chr5 (248-327)||(41455191-41455270)
chr5 (230-327)||(35727272-35727368)
chr5 (225-285)||(6718887-6718947)
[»] chr3 (25 HSPs)
chr3 (225-327)||(44651257-44651359)
chr3 (230-327)||(2832071-2832168)
chr3 (226-324)||(21562850-21562945)
chr3 (225-327)||(42362905-42363005)
chr3 (225-327)||(4280582-4280684)
chr3 (225-324)||(22472753-22472852)
chr3 (231-327)||(54122623-54122719)
chr3 (232-327)||(45629494-45629589)
chr3 (225-327)||(44662231-44662332)
chr3 (231-327)||(25918939-25919034)
chr3 (231-327)||(48168973-48169069)
chr3 (225-284)||(4669026-4669085)
chr3 (225-327)||(17144418-17144521)
chr3 (225-315)||(10481315-10481405)
chr3 (236-314)||(37045617-37045693)
chr3 (226-327)||(20846770-20846871)
chr3 (266-327)||(51660687-51660748)
chr3 (232-327)||(8355630-8355726)
chr3 (231-327)||(45914887-45914985)
chr3 (225-327)||(50578684-50578786)
chr3 (231-327)||(55467328-55467422)
chr3 (225-293)||(5640447-5640515)
chr3 (225-266)||(55130036-55130077)
chr3 (233-324)||(26758531-26758623)
chr3 (248-312)||(27054396-27054460)
[»] chr2 (23 HSPs)
chr2 (225-327)||(15320276-15320379)
chr2 (225-327)||(41166449-41166551)
chr2 (225-327)||(36964279-36964383)
chr2 (226-327)||(13194198-13194301)
chr2 (225-324)||(1331288-1331387)
chr2 (225-327)||(22014255-22014356)
chr2 (231-327)||(5862343-5862440)
chr2 (225-325)||(27301180-27301280)
chr2 (232-326)||(31719767-31719860)
chr2 (228-327)||(44085785-44085886)
chr2 (236-327)||(27898639-27898730)
chr2 (227-327)||(36500314-36500412)
chr2 (232-325)||(17763048-17763141)
chr2 (226-327)||(30514629-30514728)
chr2 (230-324)||(11051095-11051191)
chr2 (226-290)||(30759356-30759420)
chr2 (225-320)||(43452417-43452512)
chr2 (257-323)||(34572638-34572703)
chr2 (225-314)||(12041291-12041380)
chr2 (225-269)||(11377404-11377448)
chr2 (245-317)||(28790825-28790897)
chr2 (272-312)||(27962389-27962429)
chr2 (225-301)||(44741793-44741869)
[»] scaffold0664 (1 HSPs)
scaffold0664 (226-327)||(6277-6378)
[»] scaffold0001 (1 HSPs)
scaffold0001 (226-327)||(427941-428042)


Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 27674593 - 27674916
Alignment:
Q  1 gattttggtattaggttaagtttttcaattatannnnnnnagggtcggcccaacatatatctaggcccagttgcaaaatagaaaagaaaattgatattcc 100  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27674593 gattttggtattaggttaagtttttcaattatatttttttagggtcggcccaacatatatctaggcccagttgcaaaatagaaaagaaaattgatattcc 27674692  T
Q  101 ccctttcacttttgctcattcccaccgcggagtttcaaaatgaaccctagcgacagttaattgccgctcgatatctagcgtgagttaactgtccctaccc 200  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  27674693 ---tttcacttttgctcattcccaccgcggagtttcaaaatgaaccctagcgacagttaattgccgctcgatatctagtgtgagttaaatgtccctaccc 27674789  T
Q  201 caacgatagttaacttgtgttggcctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaactt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27674790 caacgatagttaacttgtgttggcctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaactt 27674889  T
Q  301 aagaagagaaaaaatatgtcattttat 327  Q
    |||||||||||||||||||||||||||    
T  27674890 aagaagagaaaaaatatgtcattttat 27674916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 27666865 - 27666732
Alignment:
Q  1 gattttggtattaggttaagtttttcaattatannnnnnnagggtcggcccaacatatatctaggcccagttgcaaaatagaaaagaaaattgatatt-c 99  Q
    |||||||||||||||||| |||||||  |||||       |||||| |||||||||||||  ||||| ||||||||| ||||||||||||||| | || |    
T  27666865 gattttggtattaggttatgtttttcggttataattttttagggtcagcccaacatatattcaggcctagttgcaaactagaaaagaaaattgctcttcc 27666766  T
Q  100 cccctttcacttttgctcattcccaccgcggagt 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  27666765 cccctttcacttttgctcattcccaccgctgagt 27666732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 40436732 - 40436834
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    ||||||||||||||||||  |||| || || ||||||||||||||| |||| ||||||||||||||||| |||  ||| || ||||||||||||||||||    
T  40436732 ctaagattttatcattctctaaaattttaaatagcacataaatacgttttttaaataaaaagcaaagaaggaatctaacaaaagaaaaaatatgtcattt 40436831  T
Q  325 tat 327  Q
    |||    
T  40436832 tat 40436834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 9012623 - 9012521
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    ||||||||||||||||||  ||||||| |||||||||||||||||   |||||| | || |||||||||  ||||||| ||||||||| |||||||||||    
T  9012623 ctaagattttatcattctctaaaagtttaagtagcacataaatacatctttgaagttaatagcaaagaagaaacttaacaagagaaaatatatgtcattt 9012524  T
Q  325 tat 327  Q
    |||    
T  9012523 tat 9012521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 28441764 - 28441866
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    |||| ||||||||||| |  ||||||||||||||||||||||  |  |||||||||||||| |||||||  ||||||| || ||||| ||||||||||||    
T  28441764 ctaaaattttatcattatctaaaagttcaagtagcacataaaaccatttttgaaataaaaaacaaagaagaaacttaacaaaagaaagaatatgtcattt 28441863  T
Q  325 tat 327  Q
    |||    
T  28441864 tat 28441866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 245 - 313
Target Start/End: Complemental strand, 3129417 - 3129349
Alignment:
Q  245 aaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaa 313  Q
    |||||||||||||||||||||||||  ||||||||||||| ||||||||  ||||||| ||||||||||    
T  3129417 aaaagttcaagtagcacataaatacatttttgaaataaaatgcaaagaagaaacttaacaagagaaaaa 3129349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 15452447 - 15452355
Alignment:
Q  232 tttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    |||||||||||  ||||||||||||||||| |||||||  |||||||||||||  |||||||  || |||| |||| ||||||||||||||||    
T  15452447 tttatcattctctaaaagttcaagtagcacgtaaatacatttttgaaataaaacacaaagaagaaatttaacaagaaaaaaaatatgtcattt 15452355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 44337043 - 44337145
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagag-aaaaaatatgtcatt 323  Q
    ||||||||||||||||||| |||||||||||||||  ||||||||  |||||| |||||||| ||||||  ||||||| ||||| ||||||  |||||||    
T  44337043 ctaagattttatcattctttaaaagttcaagtagcgtataaatac-tttttgacataaaaagaaaagaagaaacttaacaagagtaaaaaaattgtcatt 44337141  T
Q  324 ttat 327  Q
    ||||    
T  44337142 ttat 44337145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 229 - 314
Target Start/End: Complemental strand, 14185655 - 14185570
Alignment:
Q  229 gattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaa 314  Q
    ||||||||||||||  ||||||| ||||| |||||||||||  ||||||||||| ||||||  ||| ||||||| |||||||||||    
T  14185655 gattttatcattctctaaaagtttaagtaacacataaatacatttttgaaataacaagcaaccaataaacttaacaagagaaaaaa 14185570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 327
Target Start/End: Complemental strand, 24681866 - 24681773
Alignment:
Q  235 atcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaa-aaaatatgtcattttat 327  Q
    ||||||||  || ||||||||||||||||||||||  |||||| | ||||| |||||||  ||||||| ||||||| |||||||||||||||||    
T  24681866 atcattctctaagagttcaagtagcacataaatacatttttgatagaaaaaacaaagaagaaacttaacaagagaaaaaaatatgtcattttat 24681773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 327
Target Start/End: Complemental strand, 12193240 - 12193148
Alignment:
Q  233 ttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    |||||||||||  | ||||||||||||||||||||||  |||||| | |||||||||||||  ||||||| |  |||||||| ||||||||||||    
T  12193240 ttatcattctttgagagttcaagtagcacataaatacatttttgatagaaaaagcaaagaaaaaacttaaca--agaaaaaaaatgtcattttat 12193148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 327
Target Start/End: Complemental strand, 12437668 - 12437576
Alignment:
Q  233 ttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    |||||||||||  | ||||||||||||||||||||||  |||||| | |||||||||||||  ||||||| |  |||||||| ||||||||||||    
T  12437668 ttatcattctttgagagttcaagtagcacataaatacatttttgatagaaaaagcaaagaaaaaacttaaca--agaaaaaaaatgtcattttat 12437576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 231 - 327
Target Start/End: Original strand, 4785541 - 4785637
Alignment:
Q  231 ttttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    |||||||||| |  || ||||||||||| ||||||||||  |||||||| ||||||  |||||  ||||| | |||||||||||||| |||||||||    
T  4785541 ttttatcattatctaagagttcaagtagaacataaatacatttttgaaagaaaaagataagaagaaactttacaagagaaaaaatatctcattttat 4785637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 325
Target Start/End: Complemental strand, 12074005 - 12073908
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    ||||||||||||||||||   ||||||||||||| |||   ||||  |||| || |||||||||||| |  ||||||  |||||||||||||||||||||    
T  12074005 ctaagattttatcattctcttaaagttcaagtagaaca---atacattttttaattaaaaagcaaagtagaaacttagcaagagaaaaaatatgtcattt 12073909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 1271453 - 1271530
Alignment:
Q  250 ttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    ||||||||| ||||||||||   ||| |||  ||||||||||||  ||||||| |||||||||||||| |||||||||    
T  1271453 ttcaagtagtacataaatacatgttttaaagtaaaagcaaagaagaaacttaacaagagaaaaaatatatcattttat 1271530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 327
Target Start/End: Complemental strand, 22810969 - 22810874
Alignment:
Q  235 atcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaag---agaaaaaatatgtcattttat 327  Q
    ||||||||  || ||||||||||||||||||||||  |||||| | |||||||||  ||| ||||||| |||   |||||||| ||||||||||||    
T  22810969 atcattctataagagttcaagtagcacataaatacatttttgatagaaaaagcaagaaataaacttaaaaagtgaagaaaaaaaatgtcattttat 22810874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 327
Target Start/End: Complemental strand, 12660055 - 12659955
Alignment:
Q  226 taagattttatcattct-taaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    ||||||||| ||||||  ||||||||| ||||| |||| |||||   ||| ||||||||||| ||| ||  ||||||| | |||||||||||||||||||    
T  12660055 taagattttgtcattcactaaaaagtttaagtaacacaaaaatat--tttagaaataaaaagtaaataagaaacttaatacgagaaaaaatatgtcattt 12659958  T
Q  325 tat 327  Q
    |||    
T  12659957 tat 12659955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 327
Target Start/End: Original strand, 41346208 - 41346307
Alignment:
Q  228 agattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    ||||||||||| | |  |||| |||||||| |||||||||||  |||| ||||||||||||  |||  ||| ||| ||||||||||| ||||||| ||||    
T  41346208 agattttatcactatctaaaaattcaagtaacacataaatacatttttaaaataaaaagcagcgaaaaaacctaacaagagaaaaaacatgtcatgttat 41346307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 327
Target Start/End: Original strand, 11219260 - 11219353
Alignment:
Q  235 atcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagag-aaaaaatatgtcattttat 327  Q
    ||||||||  || |||||||||| |||||||||||  |||||| | ||||| | |||||  ||||||| || || |||||||||||||||||||    
T  11219260 atcattctctaagagttcaagtaacacataaatacatttttgatagaaaaaaccaagaagaaacttaacaaaagaaaaaaatatgtcattttat 11219353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 28801865 - 28801933
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaa 293  Q
    ||||| ||||||||||||  |||||||||| || || ||||||||  |||| |||||||| ||||||||    
T  28801865 ctaaggttttatcattctctaaaagttcaattaacatataaatacatttttaaaataaaatgcaaagaa 28801933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 5122169 - 5122067
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    ||||| |||||||||| |  |||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| |||||||||||||||||||||    
T  5122169 ctaaggttttatcattatataaaagttcaagtagcacataaatacgttttttaaataaaaagcaaagaaagaacttaacaagagaaaaaatatgtcattt 5122070  T
Q  325 tat 327  Q
    |||    
T  5122069 tat 5122067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 48338638 - 48338740
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    |||| |||||||||||||| ||||||||||||| |||||||||||  ||||||||||||||||||||||  ||||||| || ||||||||||||||||||    
T  48338638 ctaatattttatcattctttaaaagttcaagtaacacataaatacatttttgaaataaaaagcaaagaagaaacttaacaatagaaaaaatatgtcattt 48338737  T
Q  325 tat 327  Q
    |||    
T  48338738 tat 48338740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 228 - 327
Target Start/End: Complemental strand, 18536445 - 18536346
Alignment:
Q  228 agattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    |||| ||||||||||  |||||||||||||||||||||||||  |||||||||||||||| |||||  ||||||| ||||||||||||||||||||||||    
T  18536445 agatgttatcattctctaaaagttcaagtagcacataaatacatttttgaaataaaaagcgaagaagaaacttaacaagagaaaaaatatgtcattttat 18536346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 226 - 327
Target Start/End: Original strand, 46471722 - 46471823
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatttt 325  Q
    |||||||||||||||||  ||||||| ||||| |||||||||||  ||||||||||||||| ||||||  ||||||| ||||||||||||||||||||||    
T  46471722 taagattttatcattctctaaaagttgaagtatcacataaatacatttttgaaataaaaagtaaagaaaaaacttaacaagagaaaaaatatgtcatttt 46471821  T
Q  326 at 327  Q
    ||    
T  46471822 at 46471823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 32223095 - 32223000
Alignment:
Q  230 attttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    |||||||||||||  |||||||||||||||||| |||||| |||||||||||||||| ||||||  ||||||| |  |||||||||||||||||||||    
T  32223095 attttatcattctctaaaagttcaagtagcacacaaatacacttttgaaataaaaagtaaagaagaaacttaaca--agaaaaaatatgtcattttat 32223000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 3666857 - 3666755
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||  ||  | ||||||||||| ||||  ||||||| |||||||||||||| ||||||    
T  3666857 ctaagattttatcattctttaaaagttcaagtaatacataaatacatttcagcaataaaaagcatagaaaaaacttaacaagagaaaaaatatatcattt 3666758  T
Q  325 tat 327  Q
    |||    
T  3666757 tat 3666755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 4688980 - 4689077
Alignment:
Q  230 attttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    ||||||||||| |||||||||||||||||||| |||||||  |||||| || |||| |||||||  || |||| |||||||||||||| |||||||||    
T  4688980 attttatcattattaaaaagttcaagtagcacctaaatacatttttgagatgaaaaacaaagaagaaaattaacaagagaaaaaatatatcattttat 4689077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 231 - 327
Target Start/End: Original strand, 41325696 - 41325792
Alignment:
Q  231 ttttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    ||||||||||||  || ||||||||||| ||||||||||  |||||||| ||||| |||||||  ||||||| || |||||||||||||||||||||    
T  41325696 ttttatcattctctaagagttcaagtagtacataaatacatttttgaaagaaaaaacaaagaagaaacttaacaaaagaaaaaatatgtcattttat 41325792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 327
Target Start/End: Original strand, 21069357 - 21069455
Alignment:
Q  231 ttttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaa--atatgtcattttat 327  Q
    ||||||||||||  || ||||||||||| ||||||||||  |||||||| |||||||||||||  ||||||| ||||||||||  ||||||||||||||    
T  21069357 ttttatcattctctaagagttcaagtagtacataaatacatttttgaaacaaaaagcaaagaagaaacttaacaagagaaaaaacatatgtcattttat 21069455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 245 - 327
Target Start/End: Original strand, 41260423 - 41260505
Alignment:
Q  245 aaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    ||||||||||||||| |||||| |   ||||||||||||||||||||||  ||||| | ||||||||||||||||||||||||    
T  41260423 aaaagttcaagtagcccataaacagatttttgaaataaaaagcaaagaagaaactttacaagagaaaaaatatgtcattttat 41260505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 226 - 327
Target Start/End: Original strand, 48685046 - 48685148
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagag-aaaaaatatgtcattt 324  Q
    |||||||||| ||||||  ||  |||||||||||||||||| | | |||||||||||||| |||||||| || |||| ||||| ||||||||||||||||    
T  48685046 taagattttaccattctctaacggttcaagtagcacataaaaatgtttttgaaataaaaaacaaagaataaatttaacaagagaaaaaaatatgtcattt 48685145  T
Q  325 tat 327  Q
    |||    
T  48685146 tat 48685148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 327
Target Start/End: Original strand, 27743505 - 27743598
Alignment:
Q  235 atcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagag-aaaaaatatgtcattttat 327  Q
    ||||||||  || ||||||||||| ||||||||||  |||||||| |||||||||||||  ||||||| ||||| |||||||||||||||||||    
T  27743505 atcattctctaagagttcaagtagtacataaatacatttttgaaagaaaaagcaaagaagaaacttaacaagagaaaaaaatatgtcattttat 27743598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 321
Target Start/End: Complemental strand, 48293214 - 48293122
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtca 321  Q
    ||||||||||| ||| |  |||||||||||||||||||||||||  ||||||   |||||||||||||  ||||||| ||||||||||||||||||    
T  48293214 taagattttattattttctaaaagttcaagtagcacataaatacatttttga---aaaaagcaaagaagaaacttaataagagaaaaaatatgtca 48293122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 6102182 - 6102283
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    ||||||||||| ||||||| |||||||| ||||||| ||||||||  |||| | ||||||||| |||||  ||||||| | ||||||||| |||||||||    
T  6102182 ctaagattttaacattctttaaaagttccagtagcaaataaatacttttttaatataaaaagcgaagaagaaacttaacacgagaaaaaa-atgtcattt 6102280  T
Q  325 tat 327  Q
    |||    
T  6102281 tat 6102283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 35014569 - 35014671
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    |||| |||||||||||||  | ||||| |||||||||||||||||  |||| ||||||||| ||| |||  ||||||| ||||||||| |||||||| ||    
T  35014569 ctaaaattttatcattctctagaagtttaagtagcacataaatacattttttaaataaaaaacaatgaagaaacttaacaagagaaaatatatgtcactt 35014668  T
Q  325 tat 327  Q
    |||    
T  35014669 tat 35014671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 226 - 327
Target Start/End: Original strand, 14867062 - 14867163
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatttt 325  Q
    ||||||||||||||||   ||||| ||||||| |||||||| |   ||| ||||||||||| ||||||  ||||||| |||||||| |||||||||||||    
T  14867062 taagattttatcattccctaaaagatcaagtaacacataaaaatattttagaaataaaaagtaaagaagaaacttaacaagagaaataatatgtcatttt 14867161  T
Q  326 at 327  Q
    ||    
T  14867162 at 14867163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 225 - 314
Target Start/End: Complemental strand, 36106259 - 36106170
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaa 314  Q
    |||| |||||||||||||   |||||||||| |||||||||||||  ||||||||||||||| ||||||  ||||||| || ||||||||    
T  36106259 ctaatattttatcattctcttaaagttcaaggagcacataaatacatttttgaaataaaaagtaaagaagaaacttaacaaaagaaaaaa 36106170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 327
Target Start/End: Original strand, 20986717 - 20986796
Alignment:
Q  248 agttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    ||||||||||  |||||||||   |||||||| |||||| ||||||  ||||||| ||||||||||||||||||||||||    
T  20986717 agttcaagtaatacataaataaatttttgaaagaaaaaggaaagaagaaacttaacaagagaaaaaatatgtcattttat 20986796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 45226668 - 45226735
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaa 293  Q
    |||||||||||||||||  ||| |||||| |||||| |||||||  ||||||||||||||||||||||    
T  45226668 taagattttatcattctctaaaggttcaaatagcacgtaaatacatttttgaaataaaaagcaaagaa 45226735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 324
Target Start/End: Original strand, 18399340 - 18399417
Alignment:
Q  247 aagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    |||||||||||| ||||||||||  |||||| ||||||| |||||||  ||||||| |||  ||||||||||||||||    
T  18399340 aagttcaagtagaacataaatacatttttgagataaaaatcaaagaagaaacttaacaagtcaaaaaatatgtcattt 18399417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 302
Target Start/End: Complemental strand, 48602298 - 48602221
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaa 302  Q
    |||||||||||||||| |  |||||||||||||||||||||| |   ||||||||||||||| ||||||  |||||||    
T  48602298 ctaagattttatcattatctaaaagttcaagtagcacataaacatatttttgaaataaaaagtaaagaagaaacttaa 48602221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 309
Target Start/End: Original strand, 49641127 - 49641211
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagaga 309  Q
    |||||||||||||||| |  ||||||||||||| |||||||||||  ||||||| | ||||||||| ||  ||||||| ||||||    
T  49641127 ctaagattttatcattatctaaaagttcaagtaacacataaatacatttttgaagtgaaaagcaaaaaagaaacttaacaagaga 49641211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 287
Target Start/End: Complemental strand, 25686248 - 25686187
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagc 287  Q
    |||| |||||||||||||| ||||||||||||||||| |||||||  |||| |||||||||||    
T  25686248 ctaaaattttatcattctttaaaagttcaagtagcac-taaatacatttttaaaataaaaagc 25686187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 311
Target Start/End: Complemental strand, 1920364 - 1920280
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaa 311  Q
    ||||||||||| |||||  ||||||||||||||| | |||| ||  |||| ||||||||||| |||||  ||||||||||||||||    
T  1920364 taagattttattattctctaaaagttcaagtagctc-taaacacattttttaaataaaaagcgaagaacaaacttaagaagagaaa 1920280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 4642766 - 4642830
Alignment:
Q  250 ttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaa 314  Q
    |||| |||||||||||||||  |||||| | |||||||||||||  ||||||| |||||||||||    
T  4642766 ttcatgtagcacataaatacatttttgatagaaaaagcaaagaagaaacttaacaagagaaaaaa 4642830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 314
Target Start/End: Original strand, 8484978 - 8485057
Alignment:
Q  235 atcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaa 314  Q
    ||||||||  || ||||||||||||| ||||||||  | |||| | |||||||||||||  ||||||| |||||||||||    
T  8484978 atcattctctaagagttcaagtagcatataaatacattattgatagaaaaagcaaagaagaaacttaacaagagaaaaaa 8485057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 272 - 323
Target Start/End: Complemental strand, 41312413 - 41312362
Alignment:
Q  272 ttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatt 323  Q
    ||||||||||||||||||||||  || |||| || |||||||||||||||||    
T  41312413 ttttgaaataaaaagcaaagaagaaatttaacaatagaaaaaatatgtcatt 41312362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 327
Target Start/End: Complemental strand, 7783969 - 7783873
Alignment:
Q  232 tttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaa--aatatgtcattttat 327  Q
    |||||||||||  ||||  || ||||| ||||||||||  ||||||||||||||| ||||||  ||||||| |||||||||  || ||||||||||||    
T  7783969 tttatcattctctaaaaaatctagtagaacataaatacatttttgaaataaaaagtaaagaa-aaacttaacaagagaaaaagaaaatgtcattttat 7783873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 35233059 - 35232982
Alignment:
Q  250 ttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    ||||| |||||| ||||||   ||||||||||||||| ||| ||| || |||| |||| |||||| ||||||||||||    
T  35233059 ttcaattagcacgtaaataaatttttgaaataaaaagtaaataataaatttaacaagaaaaaaaaaatgtcattttat 35232982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 28148087 - 28148147
Alignment:
Q  252 caagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaa 312  Q
    ||||||||||||||||||  |||||| | |||||||||||||  ||||||| | |||||||    
T  28148087 caagtagcacataaatacatttttgatagaaaaagcaaagaagaaacttaacaggagaaaa 28148147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 327
Target Start/End: Original strand, 40494706 - 40494809
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacata--aatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatt 323  Q
    ||||||||| |||||||   |||||||||||| || |||  |||||| ||||||||||||||| ||| ||  ||||||| |||| ||||  | |||||||    
T  40494706 taagattttgtcattctcttaaagttcaagtaacatatataaatacgtttttgaaataaaaagtaaacaagtaacttaacaagataaaatttttgtcatt 40494805  T
Q  324 ttat 327  Q
    ||||    
T  40494806 ttat 40494809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 269
Target Start/End: Original strand, 42199085 - 42199129
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatac 269  Q
    |||| ||||||| |||||  |||||||||||||||||||||||||    
T  42199085 ctaaaattttattattctctaaaagttcaagtagcacataaatac 42199129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 226 - 327
Target Start/End: Original strand, 30855391 - 30855492
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatttt 325  Q
    |||||||||||||||||  |||||||| |||| |||||||||||| |||| ||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  30855391 taagattttatcattctctaaaagttcgagtaacacataaatacgtttttaaaataaaaagcaaagaaagaacttaaggagagaaaaaatatgtcatttt 30855490  T
Q  326 at 327  Q
    ||    
T  30855491 at 30855492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 245 - 327
Target Start/End: Complemental strand, 8118049 - 8117968
Alignment:
Q  245 aaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||| |||||||||    
T  8118049 aaaagatcaagtagcacataaatacgtttttgaaataaaaagcaaagaatgaactaaacaaaagaaaaaatat-tcattttat 8117968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 226 - 325
Target Start/End: Original strand, 23032977 - 23033075
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatttt 325  Q
    |||||||||||||||||  ||| ||||||||||||||||||||   ||||||||||||||| ||||||  ||||||| |||||||||||||| |||||||    
T  23032977 taagattttatcattctctaaa-gttcaagtagcacataaatatatttttgaaataaaaagtaaagaaaaaacttaacaagagaaaaaatatttcatttt 23033075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 232 - 319
Target Start/End: Original strand, 43202716 - 43202803
Alignment:
Q  232 tttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgt 319  Q
    ||||| |||||  |||||||||||||||||||||||||  ||||||||||||||| ||||||  ||||||| ||||||||||||||||    
T  43202716 tttattattctctaaaagttcaagtagcacataaatacatttttgaaataaaaagtaaagaagaaacttaacaagagaaaaaatatgt 43202803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 524656 - 524554
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    |||| ||||||| |||||  |||||| ||||||||| ||||||||  ||||||||||||||||||||||  ||||||| || ||||||||||||| ||||    
T  524656 ctaatattttattattctctaaaagtccaagtagcatataaatacatttttgaaataaaaagcaaagaagaaacttaacaatagaaaaaatatgttattt 524557  T
Q  325 tat 327  Q
    |||    
T  524556 tat 524554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 326
Target Start/End: Original strand, 27456631 - 27456723
Alignment:
Q  235 atcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagc-aaagaatgaacttaagaagagaaaaaatatgtcatttta 326  Q
    ||||||||  ||||||| |||||||||||||||||  |||| ||||||||||| ||||||  ||||||| |||||||||||||||||||||||    
T  27456631 atcattctctaaaagtttaagtagcacataaatacattttttaaataaaaagcaaaagaagaaacttaacaagagaaaaaatatgtcatttta 27456723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 327
Target Start/End: Original strand, 11399420 - 11399518
Alignment:
Q  228 agattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    |||||||||||||||  |||||||||||||| |||||| |||  ||| |||||||||||||| |||  ||||||| |||||| |||||||||||||||||    
T  11399420 agattttatcattctctaaaagttcaagtagaacataa-tacattttagaaataaaaagcaacgaagaaacttaacaagagacaaaatatgtcattttat 11399518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 6879885 - 6879783
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    ||||||||||||||||||  |||| |||||||| ||| |||| |   | ||||||||||||  ||||||  ||||||| |||||||||||||||||||||    
T  6879885 ctaagattttatcattctctaaaaattcaagtaacacgtaaaaatattgttgaaataaaaaataaagaagaaacttaacaagagaaaaaatatgtcattt 6879786  T
Q  325 tat 327  Q
    |||    
T  6879785 tat 6879783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 48643082 - 48643183
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    ||||||||||||||||||  ||||  |||||||||||||||||| | |||  ||| |||||| |||||| |||  ||| |||||||||||||||||||||    
T  48643082 ctaagattttatcattctctaaaaaatcaagtagcacataaataag-tttaaaaaaaaaaagtaaagaaagaatgtaacaagagaaaaaatatgtcattt 48643180  T
Q  325 tat 327  Q
    |||    
T  48643181 tat 48643183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 314
Target Start/End: Original strand, 40849156 - 40849240
Alignment:
Q  230 attttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaa 314  Q
    |||||||||||||  ||||||||||| | |||||||||||  ||||||||||||||||||| ||  ||||||| || ||||||||    
T  40849156 attttatcattctctaaaagttcaaggaacacataaatacatttttgaaataaaaagcaaaaaagaaacttaacaacagaaaaaa 40849240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 259 - 327
Target Start/End: Complemental strand, 47646515 - 47646447
Alignment:
Q  259 cacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    |||||||||||  |||| |||||||||| ||||||  ||||||| ||||||||||||||||||||||||    
T  47646515 cacataaatacattttttaaataaaaagtaaagaagaaacttaacaagagaaaaaatatgtcattttat 47646447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 30079364 - 30079262
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    ||||||||||||| ||||  |||| || |||||||||||||||| | |||| ||||||||| |||||||  ||  ||| ||||||||||||||  |||||    
T  30079364 ctaagattttatctttctctaaaattttaagtagcacataaatatgttttttaaataaaaaacaaagaagaaatctaacaagagaaaaaatattccattt 30079265  T
Q  325 tat 327  Q
    |||    
T  30079264 tat 30079262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 314
Target Start/End: Original strand, 35495705 - 35495790
Alignment:
Q  228 agattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaa 314  Q
    |||||||||||||||  ||||||||||||||||||||||||   | ||| ||| ||||||||||||  ||||||| |||||||||||    
T  35495705 agattttatcattctgtaaaagttcaagtagcacataaata-aatattggaatgaaaagcaaagaagaaacttaacaagagaaaaaa 35495790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 324
Target Start/End: Complemental strand, 27214968 - 27214880
Alignment:
Q  236 tcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    |||||||| |||||||||| | ||||||||||||  |||||| | |||||||||||||  ||||||| || ||| || |||||||||||    
T  27214968 tcattctttaaaagttcaaattgcacataaatacatttttgagaaaaaaagcaaagaagaaacttaacaaaagataatatatgtcattt 27214880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 327
Target Start/End: Original strand, 1812797 - 1812876
Alignment:
Q  248 agttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    |||||||||||  ||||||||   |||||| | |||||||||||||  |||| || ||||||||||||||||||||||||    
T  1812797 agttcaagtagtgcataaatatctttttgatagaaaaagcaaagaagaaactcaacaagagaaaaaatatgtcattttat 1812876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 17493174 - 17493092
Alignment:
Q  228 agattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaa 311  Q
    |||||||||||||||  ||||||||||||||| | |||| ||  |||| ||||||||||| |||||  ||||||||||||||||    
T  17493174 agattttatcattctctaaaagttcaagtagctc-taaacacattttttaaataaaaagcgaagaacaaacttaagaagagaaa 17493092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 17560040 - 17560122
Alignment:
Q  228 agattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaa 311  Q
    |||||||||||||||  ||||||||||||||| | |||| ||  |||| ||||||||||| |||||  ||||||||||||||||    
T  17560040 agattttatcattctctaaaagttcaagtagctc-taaacacattttttaaataaaaagcgaagaacaaacttaagaagagaaa 17560122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 26214893 - 26214806
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaa 312  Q
    ||||||||| ||| || || | |||||||| |||||||| |||||  ||||||||||||||||||||||  ||||||| || ||||||    
T  26214893 ctaagatttcatcgttatttataagttcaaatagcacatgaatacatttttgaaataaaaagcaaagaagaaacttaacaaaagaaaa 26214806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 327
Target Start/End: Original strand, 36550767 - 36550861
Alignment:
Q  232 tttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    |||| ||||||  |||| |||||||| || ||||||||  ||| |||||||||| |||||||  | ||||| ||||||||||||||||||||||||    
T  36550767 tttaccattctataaaatttcaagtatcatataaatacagttt-gaaataaaaaacaaagaagaagcttaacaagagaaaaaatatgtcattttat 36550861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 324
Target Start/End: Original strand, 46147505 - 46147604
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    |||||||||||| ||| |  ||||||||||| ||||||||||||   ||||  ||||||||||||||||  ||||||| |||  ||||| ||||||||||    
T  46147505 ctaagattttattattgtctaaaagttcaagcagcacataaatatattttttgaataaaaagcaaagaagaaacttaacaagcaaaaaagtatgtcattt 46147604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 326
Target Start/End: Complemental strand, 16535536 - 16535435
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    ||||||||||| | |||   ||||||||||||| || |  ||||  |||||| |||||||||| |||||  ||||||  |||||||||||||||||||||    
T  16535536 ctaagattttaactttcactaaaagttcaagtatcataagaataaacttttgcaataaaaagctaagaagaaacttatcaagagaaaaaatatgtcattt 16535437  T
Q  325 ta 326  Q
    ||    
T  16535436 ta 16535435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 326
Target Start/End: Original strand, 16630126 - 16630227
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    ||||||||||| | |||   ||||||||||||| || |  ||||  |||||| |||||||||| |||||  ||||||  |||||||||||||||||||||    
T  16630126 ctaagattttaactttcactaaaagttcaagtatcataagaataaacttttgcaataaaaagctaagaagaaacttatcaagagaaaaaatatgtcattt 16630225  T
Q  325 ta 326  Q
    ||    
T  16630226 ta 16630227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 293
Target Start/End: Complemental strand, 7528986 - 7528921
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaa 293  Q
    |||||||||||||||||  ||||||||||||| |||| |||||   ||||||||||||||| ||||||    
T  7528986 taagattttatcattctctaaaagttcaagtaacacaaaaata--tttttgaaataaaaagtaaagaa 7528921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 11834242 - 11834163
Alignment:
Q  235 atcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaa 314  Q
    ||||||||| || |||||||||||||||||||||   |||||| | ||||| |||||||  ||||||  |||||||||||    
T  11834242 atcattctttaagagttcaagtagcacataaatatatttttgatagaaaaaacaaagaagaaacttagcaagagaaaaaa 11834163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 319
Target Start/End: Original strand, 16359561 - 16359620
Alignment:
Q  260 acataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgt 319  Q
    |||||||||| |||||||||||||||| ||||||  || |||| ||||||||||| ||||    
T  16359561 acataaatacacttttgaaataaaaagtaaagaagaaatttaacaagagaaaaaacatgt 16359620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 317
Target Start/End: Complemental strand, 29211380 - 29211311
Alignment:
Q  247 aagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatat 317  Q
    |||||||||||||||||||||||  |||| |||| ||||| ||||||  ||||||| |||||||| |||||    
T  29211380 aagttcaagtagcacataaatacatttttaaaat-aaaagaaaagaagaaacttaacaagagaaacaatat 29211311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 23675673 - 23675726
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaa 279  Q
    |||||||||||||||||  |||||||||| ||||| ||||||||  ||||||||    
T  23675673 taagattttatcattctctaaaagttcaaatagcatataaatacatttttgaaa 23675726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 23729686 - 23729755
Alignment:
Q  245 aaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaa 314  Q
    |||| ||||||||||  || |||||  ||||||||||||||||||||||  ||||||  |||||||||||    
T  23729686 aaaaattcaagtagcgtatgaatacatttttgaaataaaaagcaaagaagaaacttatcaagagaaaaaa 23729755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 324
Target Start/End: Original strand, 26956159 - 26956236
Alignment:
Q  247 aagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    |||||||| ||||| ||||||||  |||| |||||||||| ||||||  ||||||| || | |||| |||||||||||    
T  26956159 aagttcaaatagcatataaatacatttttcaaataaaaagtaaagaagaaacttaacaaaaaaaaatatatgtcattt 26956236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 49012346 - 49012387
Alignment:
Q  227 aagattttatcattcttaaaaagttcaagtagcacataaata 268  Q
    ||||||||||||||||| |||||||||| ||| |||||||||    
T  49012346 aagattttatcattcttgaaaagttcaaatagaacataaata 49012387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 23410948 - 23410904
Alignment:
Q  283 aaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    |||||||||||  ||||||| |||||||||||||| |||||||||    
T  23410948 aaagcaaagaagaaacttaacaagagaaaaaatatttcattttat 23410904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 327
Target Start/End: Complemental strand, 31287559 - 31287463
Alignment:
Q  231 ttttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    |||||||| |||  || |||| |||||||||||||||||  |||| |   ||||| | |||||  || |||||||||||||||||| ||||||||||    
T  31287559 ttttatcaatctctaagagttaaagtagcacataaatacattttttattgaaaaaaccaagaagaaatttaagaagagaaaaaatacgtcattttat 31287463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 227 - 327
Target Start/End: Complemental strand, 36203235 - 36203135
Alignment:
Q  227 aagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatttta 326  Q
    ||||||||||||||||  |||||||||||||||||||||||||  ||||||||||||||||||||||  ||||||| ||||||| |||||||||||||||    
T  36203235 aagattttatcattctataaaagttcaagtagcacataaatacatttttgaaataaaaagcaaagaagaaacttaacaagagaacaaatatgtcatttta 36203136  T
Q  327 t 327  Q
    |    
T  36203135 t 36203135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 44056033 - 44056130
Alignment:
Q  230 attttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    ||||||||||| |  |||||||||||||||||||||||||  |||||||||| |||||||||||||||||||| |||||||||||||| |||||||||    
T  44056033 attttatcattttctaaaagttcaagtagcacataaatacatttttgaaatataaagcaaagaatgaacttaacaagagaaaaaatatatcattttat 44056130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 225 - 324
Target Start/End: Complemental strand, 35992385 - 35992286
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    |||||||||||| |||||  |||||||||||||||||||||||||  ||||||||||||||| ||||||  ||||||| |||||||||||||||||||||    
T  35992385 ctaagattttattattctctaaaagttcaagtagcacataaataccattttgaaataaaaagtaaagaagaaacttaacaagagaaaaaatatgtcattt 35992286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 230 - 324
Target Start/End: Complemental strand, 35980057 - 35979963
Alignment:
Q  230 attttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    ||||||| |||||  |||||||||||||||||||||||||  ||||||||||||||||||||||  ||||||| |||||||||||||||||||||    
T  35980057 attttattattctctaaaagttcaagtagcacataaataccattttgaaataaaaagcaaagaagaaacttaacaagagaaaaaatatgtcattt 35979963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 8165331 - 8165230
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    |||||||||||||||| |  || ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||  ||||| |||| |||||||||    
T  8165331 ctaagattttatcattatctaagagttcaagtagcacataaatacgtttttgaaataaaaagcaaagaaggaacttaacgagagagaaaa-atgtcattt 8165233  T
Q  325 tat 327  Q
    |||    
T  8165232 tat 8165230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 225 - 322
Target Start/End: Original strand, 17652040 - 17652137
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcat 322  Q
    |||||||||||| |||||  |||||||||||||||||| ||||||  |||||||||||||| |||||||  |||||||  | ||||||||||||||||    
T  17652040 ctaagattttattattctctaaaagttcaagtagcacaaaaatacatttttgaaataaaaaacaaagaagaaacttaacgaaagaaaaaatatgtcat 17652137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 231 - 327
Target Start/End: Original strand, 6248374 - 6248470
Alignment:
Q  231 ttttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    ||||||| ||||  |||||||||| ||||||||||||||  |||||| | |||||||||||||  ||||||| ||||| ||||||||||||||||||    
T  6248374 ttttatctttctctaaaagttcaattagcacataaatacatttttgatagaaaaagcaaagaagaaacttaacaagaggaaaaatatgtcattttat 6248470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 231 - 327
Target Start/End: Complemental strand, 26344830 - 26344734
Alignment:
Q  231 ttttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    ||||||||||||  || |||||| |||| |||| |||||  |||||||| |||||||||||||  ||||||| ||||||||||||||||||||||||    
T  26344830 ttttatcattctctaagagttcaggtagtacatgaatacatttttgaaagaaaaagcaaagaagaaacttaacaagagaaaaaatatgtcattttat 26344734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 10847315 - 10847228
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaa 312  Q
    |||||||||||||||| || |||||||||| |||||| |||||||  ||||||||||||||||||||||  ||||||| || ||||||    
T  10847315 ctaagattttatcatttttgaaaagttcaaatagcacgtaaatacatttttgaaataaaaagcaaagaagaaacttaacaaaagaaaa 10847228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 248 - 327
Target Start/End: Original strand, 50471417 - 50471495
Alignment:
Q  248 agttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    ||||||||||||||||||||||  |||||||| ||||||||||||| ||||||||  ||||||||||| |||||||||||    
T  50471417 agttcaagtagcacataaatacttttttgaaa-aaaaagcaaagaaggaacttaactagagaaaaaatgtgtcattttat 50471495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 245 - 327
Target Start/End: Complemental strand, 9249858 - 9249776
Alignment:
Q  245 aaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    |||||| |||||| |||||||||||  ||||||||||||||  ||||||  ||||||| ||||||||||||||||||||||||    
T  9249858 aaaagtacaagtaacacataaatacatttttgaaataaaaaataaagaagaaacttaacaagagaaaaaatatgtcattttat 9249776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 327
Target Start/End: Original strand, 17989340 - 17989441
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatttt 325  Q
    |||||| ||||||||||  ||||||||||||||||||||||||   ||||||||||||||| ||||||  ||||||  |||| |||||| | ||||||||    
T  17989340 taagatgttatcattctataaaagttcaagtagcacataaatatatttttgaaataaaaagaaaagaagaaacttagcaagaaaaaaaaaaagtcatttt 17989439  T
Q  326 at 327  Q
    ||    
T  17989440 at 17989441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 327
Target Start/End: Complemental strand, 25559801 - 25559705
Alignment:
Q  231 ttttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    |||||||||||   || ||||||||||| | ||||||||  ||||||||||||||||||||||  ||||||| || ||| |||||||||||||||||    
T  25559801 ttttatcattcgctaagagttcaagtagtagataaatacatttttgaaataaaaagcaaagaagaaacttaacaaaagataaaatatgtcattttat 25559705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 327
Target Start/End: Complemental strand, 52380516 - 52380420
Alignment:
Q  231 ttttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    |||||| |||||  || ||||||| ||||||||||||||  |||||| | ||||| |||||||  ||||||| ||||||||||||||||||||||||    
T  52380516 ttttatgattctctaagagttcaaatagcacataaatacatttttgatagaaaaaacaaagaagaaacttaacaagagaaaaaatatgtcattttat 52380420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 245 - 327
Target Start/End: Complemental strand, 21685321 - 21685238
Alignment:
Q  245 aaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaa-aaaatatgtcattttat 327  Q
    |||||||||||||||| || ||||| ||||||||||||||||||| |||  ||||||  ||||||| |||||||||||||||||    
T  21685321 aaaagttcaagtagcatatgaatacacttttgaaataaaaagcaaggaagaaacttatcaagagaaaaaaatatgtcattttat 21685238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 9961972 - 9961921
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttga 277  Q
    |||||||||||||||||  ||||||||||||||||||||||||| |||||||    
T  9961972 taagattttatcattctctaaaagttcaagtagcacataaatacacttttga 9961921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 9330693 - 9330795
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    ||||||||||||||||||  |||| |||||||| | ||||  |||  |||  |||||||||||||||||  ||||||| || ||||||||||| ||||||    
T  9330693 ctaagattttatcattctctaaaatttcaagtaactcatatgtacattttataaataaaaagcaaagaacaaacttaacaaaagaaaaaatatatcattt 9330792  T
Q  325 tat 327  Q
    |||    
T  9330793 tat 9330795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 11073158 - 11073057
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    ||||||| ||||||||||  |||| || |||||||||||||||||| |||| |||||||||| |||||| |||   || |||| |||||| |||||||||    
T  11073158 ctaagatgttatcattctctaaaatttgaagtagcacataaatacgttttttaaataaaaagtaaagaaagaatcaaacaaga-aaaaaaaatgtcattt 11073060  T
Q  325 tat 327  Q
    |||    
T  11073059 tat 11073057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 19051416 - 19051518
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    ||||||||| ||||||||   ||| ||||||||||||| ||||||  |||| |||||||||| ||||||  || | || ||||||||| |||||||||||    
T  19051416 ctaagatttcatcattctctgaaaattcaagtagcacagaaatacatttttaaaataaaaagaaaagaagaaattgaacaagagaaaatatatgtcattt 19051515  T
Q  325 tat 327  Q
    |||    
T  19051516 tat 19051518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 23474889 - 23474789
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    ||||||||||||||||  |||||  | |||||| |||||||||||  |||| ||||||||| |||||||  || |||| |||||||||||||||||||||    
T  23474889 ctaagattttatcatttctaaaatct-caagtaacacataaataca-ttttaaaataaaaatcaaagaagaaaattaacaagagaaaaaatatgtcattt 23474792  T
Q  325 tat 327  Q
    |||    
T  23474791 tat 23474789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 248 - 327
Target Start/End: Complemental strand, 6693866 - 6693789
Alignment:
Q  248 agttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    ||||||||||| ||||||||||  |||||||| ||||| |||||||  ||||||| ||||||||||  ||||||||||||    
T  6693866 agttcaagtagtacataaatacaattttgaaagaaaaaacaaagaagaaacttaacaagagaaaaa--atgtcattttat 6693789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 248 - 327
Target Start/End: Complemental strand, 40094929 - 40094852
Alignment:
Q  248 agttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    ||||||||||| |||||  |||  |||||||| |||||||||||||  ||||||| |||||||| |||||||||||||||    
T  40094929 agttcaagtagtacata--tacatttttgaaagaaaaagcaaagaagaaacttaacaagagaaataatatgtcattttat 40094852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 29923097 - 29923054
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatac 269  Q
    |||||||||||||||||| ||||||||||||| |||||||||||    
T  29923097 taagattttatcattctttaaaagttcaagtaacacataaatac 29923054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 32910158 - 32910092
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaag 291  Q
    |||||||||| |||||||  |||| ||||||||||||||||||| | |||| ||||||||| |||||    
T  32910158 ctaagattttctcattctctaaaatttcaagtagcacataaatatgttttttaaataaaaatcaaag 32910092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 314
Target Start/End: Complemental strand, 32937854 - 32937762
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaa---taaaaagcaaagaatgaacttaagaagagaaaaaa 314  Q
    |||| |||||||||||||  ||| ||||||||||||||||||||   |||| |||   ||||||| ||||||  |||||||||||||||||||    
T  32937854 ctaaaattttatcattctctaaatgttcaagtagcacataaataaaattttaaaatagtaaaaagtaaagaagaaacttaagaagagaaaaaa 32937762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 327
Target Start/End: Original strand, 34914432 - 34914525
Alignment:
Q  231 ttttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    |||||| |||||  || ||||||||||||||||||||||  |||| ||| ||||||||||||| |||  ||| |  |||||||||||||||||||||    
T  34914432 ttttattattctctaagagttcaagtagcacataaatacattttttaaagaaaaagcaaagaa-gaaactaaca--agaaaaaatatgtcattttat 34914525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 314
Target Start/End: Original strand, 52829103 - 52829192
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaa 314  Q
    ||||||||||||||||||  |||| || ||| || |||||||||   |||||| ||||||| |||||||  ||||||| |||||||||||    
T  52829103 ctaagattttatcattctataaaattttaaggagtacataaatatatttttgagataaaaaacaaagaagaaacttaacaagagaaaaaa 52829192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 327
Target Start/End: Original strand, 12973868 - 12973964
Alignment:
Q  231 ttttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    |||||||||| |  ||| |||||||||| |||||||| |  |||||| | ||||| |||||||  ||||||| || || ||||||||||||||||||    
T  12973868 ttttatcattatctaaatgttcaagtagtacataaatgcatttttgacagaaaaaacaaagaagaaacttaacaaaaggaaaaatatgtcattttat 12973964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 50951806 - 50951758
Alignment:
Q  245 aaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaa 293  Q
    |||| |||||||||||||||| |||  ||||||||||||||||||||||    
T  50951806 aaaatttcaagtagcacataattacatttttgaaataaaaagcaaagaa 50951758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 15881963 - 15881881
Alignment:
Q  244 aaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    |||||||  ||||| |||||||||||  |||| |||||||||||||||||  ||||||| |||| |||||| | ||||||||||    
T  15881963 aaaaagtaaaagtaacacataaatacatttttaaaataaaaagcaaagaagaaacttaacaaga-aaaaaaaaagtcattttat 15881881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 272 - 323
Target Start/End: Complemental strand, 39166941 - 39166890
Alignment:
Q  272 ttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatt 323  Q
    |||| ||||||||| |||||||  ||||||| ||||||||||||||||||||    
T  39166941 ttttaaaataaaaaccaaagaagaaacttaacaagagaaaaaatatgtcatt 39166890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 314
Target Start/End: Original strand, 41751516 - 41751603
Alignment:
Q  227 aagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaa 314  Q
    |||| |||||||||||  |||| |||||||||||  |||||||  ||||||||| |||| |||||||  || |||| |||||||||||    
T  41751516 aagactttatcattctctaaaaattcaagtagcatgtaaatacatttttgaaattaaaaacaaagaagaaaattaacaagagaaaaaa 41751603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 327
Target Start/End: Original strand, 25507192 - 25507273
Alignment:
Q  245 aaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    ||||||||||||||||||||||||   ||| |||||||||| |||||||  ||||||| || | | |||| ||||||||||||    
T  25507192 aaaagttcaagtagcacataaatatattttagaaataaaaaacaaagaaaaaacttaacaaca-acaaaaaatgtcattttat 25507273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 326
Target Start/End: Complemental strand, 27507277 - 27507199
Alignment:
Q  248 agttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatttta 326  Q
    |||| ||||| | |||||||||  |||||| | |||||||||||||   |||||| ||||||||||| |||||||||||    
T  27507277 agtttaagtaacgcataaatacatttttgatagaaaaagcaaagaagagacttaacaagagaaaaaaaatgtcatttta 27507199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 327
Target Start/End: Complemental strand, 3532760 - 3532712
Alignment:
Q  279 ataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    |||||||||||||||  || |||| |||| |||||||||||||||||||    
T  3532760 ataaaaagcaaagaagaaagttaacaagataaaaaatatgtcattttat 3532712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 11537101 - 11537153
Alignment:
Q  233 ttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaa 285  Q
    |||||||| || ||||||||||||||||  |||||||  ||||||||||||||    
T  11537101 ttatcattttttaaaagttcaagtagcatgtaaatacatttttgaaataaaaa 11537153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 26160 - 26262
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    |||| |||||||||||||| ||||||||||||| |||||||||||  ||||||||||||||||||||||  ||||||| || ||||||||||||||||||    
T  26160 ctaatattttatcattctttaaaagttcaagtaacacataaatacatttttgaaataaaaagcaaagaagaaacttaacaatagaaaaaatatgtcattt 26259  T
Q  325 tat 327  Q
    |||    
T  26260 tat 26262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 327
Target Start/End: Original strand, 14822 - 14921
Alignment:
Q  228 agattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaa-tgaacttaagaagagaaaaaatatgtcatttta 326  Q
    |||||||||||||||||||| ||||||| |||||||||||||  |||| ||||| |||| ||||||   ||||||| |||||||||||||| || |||||    
T  14822 agattttatcattcttaaaa-gttcaaggagcacataaatacattttttaaatagaaagaaaagaagaaaacttaacaagagaaaaaatatatcttttta 14920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 32190471 - 32190369
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    ||||||||||||||||||  ||||||||||||||| |||||||||  ||||||||||||||| ||||||  ||||||| |||||||||||||||||||||    
T  32190471 ctaagattttatcattctctaaaagttcaagtagcgcataaatacatttttgaaataaaaagaaaagaagaaacttaacaagagaaaaaatatgtcattt 32190372  T
Q  325 tat 327  Q
    |||    
T  32190371 tat 32190369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 226 - 327
Target Start/End: Complemental strand, 892130 - 892029
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatttt 325  Q
    |||||||||||||||||  |||||||||||||||||||||||||  ||||||||||||||| | ||||  ||||||| ||||||||||| ||||||||||    
T  892130 taagattttatcattctctaaaagttcaagtagcacataaatacatttttgaaataaaaagtagagaagaaacttaacaagagaaaaaacatgtcatttt 892031  T
Q  326 at 327  Q
    ||    
T  892030 at 892029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 29048846 - 29048942
Alignment:
Q  230 attttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    ||||||||||||||||| ||||||||||||||||||||||  |||||||| |||||||||||||  ||||||| | ||||||||| ||||||||||||    
T  29048846 attttatcattcttaaagagttcaagtagcacataaatacatttttgaaacaaaaagcaaagaagaaacttaacatgagaaaaaa-atgtcattttat 29048942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 225 - 324
Target Start/End: Complemental strand, 19134892 - 19134792
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaata-aaaagcaaagaatgaacttaagaagagaaaaaatatgtcatt 323  Q
    |||||||||||| |||||  |||||||||||||||||||||||||  |||||||||| |||| |||||||  ||||||| ||||||||||||||||||||    
T  19134892 ctaagattttattattctctaaaagttcaagtagcacataaatacatttttgaaataaaaaaacaaagaagaaacttaacaagagaaaaaatatgtcatt 19134793  T
Q  324 t 324  Q
    |    
T  19134792 t 19134792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 12108368 - 12108265
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgctttt-gaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatt 323  Q
    ||||||||||||||||||  |||||||||||| ||| ||||||||  |||| || ||||||| |||||||  ||||||| ||||||||||||||||||||    
T  12108368 ctaagattttatcattctctaaaagttcaagtggcatataaatacattttttgacataaaaatcaaagaagaaacttaacaagagaaaaaatatgtcatt 12108269  T
Q  324 ttat 327  Q
    ||||    
T  12108268 ttat 12108265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 225 - 302
Target Start/End: Original strand, 14564719 - 14564796
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaa 302  Q
    ||||||||| ||||||||| |||||||||| ||||||||||||||  ||||||||||||||||||||||  |||||||    
T  14564719 ctaagatttcatcattctttaaaagttcaaatagcacataaatacatttttgaaataaaaagcaaagaagaaacttaa 14564796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 28633238 - 28633340
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    |||||||||||||||| |  ||||||| ||||| |||||||||||  |||||||||| |||||||| ||  ||||||| |||||||||||||  ||||||    
T  28633238 ctaagattttatcattttctaaaagtttaagtaacacataaatacatttttgaaatagaaagcaaaaaagaaacttaacaagagaaaaaatacttcattt 28633337  T
Q  325 tat 327  Q
    |||    
T  28633338 tat 28633340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 327
Target Start/End: Original strand, 22414109 - 22414206
Alignment:
Q  231 ttttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagag-aaaaaatatgtcattttat 327  Q
    ||||||||||||  ||||||||||||||||||||||||   |||||| | | |||||||||||  ||||||| ||||| |||||||||||||||||||    
T  22414109 ttttatcattctctaaaagttcaagtagcacataaatagatttttgatagataaagcaaagaagaaacttaacaagagaaaaaaatatgtcattttat 22414206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 293
Target Start/End: Complemental strand, 13532062 - 13531995
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaa 293  Q
    |||||||||||||||||  |||| ||||||||||||||||||| | |||| ||||||||| |||||||    
T  13532062 taagattttatcattctataaaatttcaagtagcacataaatatgttttttaaataaaaaacaaagaa 13531995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 319
Target Start/End: Original strand, 20500856 - 20500949
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgt 319  Q
    |||||||||||||||| | |||| || ||||||||| | |||||| |||| ||||||||| ||||||| |||  ||| || |||||||||||||    
T  20500856 taagattttatcattcattaaaattttaagtagcacgttaatacgttttttaaataaaaatcaaagaaggaatctaataaaagaaaaaatatgt 20500949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 228 - 312
Target Start/End: Original strand, 30752868 - 30752952
Alignment:
Q  228 agattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaa 312  Q
    |||||||||||||||  |||| || ||||| |||||||||||  |||||||||| ||| |||||||  ||||||| |||||||||    
T  30752868 agattttatcattctctaaaattttaagtatcacataaatacatttttgaaatagaaaacaaagaagaaacttaataagagaaaa 30752952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 327
Target Start/End: Original strand, 13092298 - 13092393
Alignment:
Q  232 tttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    |||||||||||  || |||| |||||| ||| ||||||  |||||||| |||||| |||||   ||||||| |||||||||| |||||||||||||    
T  13092298 tttatcattctctaagagtttaagtagtacaaaaatacatttttgaaagaaaaagtaaagaggaaacttaacaagagaaaaattatgtcattttat 13092393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 327
Target Start/End: Original strand, 9686352 - 9686445
Alignment:
Q  235 atcattcttaaaaagttcaagtagcacataaatacgcttttgaaata-aaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    ||||||||  || ||||||||||||||||||||||  ||||   ||| ||||||||||||  ||||||| |||||||||||||| | |||||||    
T  9686352 atcattctctaagagttcaagtagcacataaatacattttttttatagaaaagcaaagaagaaacttaacaagagaaaaaatattttattttat 9686445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 327
Target Start/End: Complemental strand, 24644733 - 24644641
Alignment:
Q  235 atcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    ||||||||  || ||| ||||||| ||||||||||  |||||||| | |||||||||||  |||| ||  |||| ||||||||||||||||||    
T  24644733 atcattctctaagagtgcaagtagtacataaatacatttttgaaagataaagcaaagaagaaactcaacgagagtaaaaatatgtcattttat 24644641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 8064820 - 8064882
Alignment:
Q  262 ataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    ||||||||  |||||||||||||| |||||||  ||||||| || |||||| |||||||||||    
T  8064820 ataaatacatttttgaaataaaaatcaaagaaaaaacttaacaaaagaaaatatatgtcattt 8064882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 227 - 327
Target Start/End: Complemental strand, 31075407 - 31075306
Alignment:
Q  227 aagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaata-aaaagcaaagaatgaacttaagaagagaaaaaatatgtcatttt 325  Q
    ||||||||||||||||  ||||||||||||| ||||||||||| ||||||||||| ||||| ||||||  ||||||| ||||||||||||||||||||||    
T  31075407 aagattttatcattctctaaaagttcaagtaacacataaatacacttttgaaataaaaaagtaaagaagaaacttaacaagagaaaaaatatgtcatttt 31075308  T
Q  326 at 327  Q
    ||    
T  31075307 at 31075306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 12378870 - 12378767
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagag-aaaaaatatgtcatt 323  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||  ||||||||||||||||||||||  ||||||| || || |||||| ||||||||    
T  12378870 ctaagattttatcattctttaaaagtttaagtagcacataaatacatttttgaaataaaaagcaaagaagaaacttaacaaaagaaaaaaaaatgtcatt 12378771  T
Q  324 ttat 327  Q
    ||||    
T  12378770 ttat 12378767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 226 - 327
Target Start/End: Original strand, 6633599 - 6633700
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatttt 325  Q
    |||||||||||||||||  | ||||||||||||||||| |||||  ||||||||| ||||||||||||  ||||||  || |||||||||||||||||||    
T  6633599 taagattttatcattctctacaagttcaagtagcacatcaatacatttttgaaatcaaaagcaaagaaaaaacttatcaacagaaaaaatatgtcatttt 6633698  T
Q  326 at 327  Q
    ||    
T  6633699 at 6633700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 226 - 327
Target Start/End: Original strand, 22553653 - 22553754
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatttt 325  Q
    |||||||||||||||||  ||||||||||||| |||||||| |   ||| ||||||||||| ||||||  ||||||| ||||||||||||||||||||||    
T  22553653 taagattttatcattctctaaaagttcaagtaacacataaaaatattttagaaataaaaagtaaagaagaaacttaacaagagaaaaaatatgtcatttt 22553752  T
Q  326 at 327  Q
    ||    
T  22553753 at 22553754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 2796611 - 2796509
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    |||| ||||||| |||||  |||| ||||||||||||||||||||  ||||||||||||||| ||||||  || |||| ||||||||||||| |||||||    
T  2796611 ctaaaattttataattctataaaatttcaagtagcacataaatacatttttgaaataaaaagtaaagaagaaatttaacaagagaaaaaatacgtcattt 2796512  T
Q  325 tat 327  Q
    |||    
T  2796511 tat 2796509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 2802772 - 2802670
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    |||| ||||||| |||||  |||| ||||||||||||||||||||  ||||||||||||||| ||||||  || |||| ||||||||||||| |||||||    
T  2802772 ctaaaattttataattctataaaatttcaagtagcacataaatacatttttgaaataaaaagtaaagaagaaatttaacaagagaaaaaatacgtcattt 2802673  T
Q  325 tat 327  Q
    |||    
T  2802672 tat 2802670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 18432384 - 18432486
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    |||||| |||||||||||  ||||||||||||||||||||| ||   ||||||||||||||||||||||  |||||||   | |||||||||||||||||    
T  18432384 ctaagactttatcattctctaaaagttcaagtagcacataactatatttttgaaataaaaagcaaagaaaaaacttaacgtgggaaaaaatatgtcattt 18432483  T
Q  325 tat 327  Q
    |||    
T  18432484 tat 18432486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 321
Target Start/End: Complemental strand, 27571845 - 27571753
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtca 321  Q
    ||||||||||| |||||  |||||||||||||||||||||||||  ||||||   |||||||||||||  ||||||| ||||||||||||||||||    
T  27571845 taagattttattattctctaaaagttcaagtagcacataaatacatttttga---aaaaagcaaagaagaaacttaataagagaaaaaatatgtca 27571753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 11402892 - 11402994
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacg-cttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatt 323  Q
    |||||||||||||||||| ||||| |||||||||||| | ||||||  |||| |||||||||||||||||  ||  ||| ||||||||||||||||||||    
T  11402892 ctaagattttatcattctcaaaaatttcaagtagcacgtgaatacgtttttttaaataaaaagcaaagaa-aaatctaacaagagaaaaaatatgtcatt 11402990  T
Q  324 ttat 327  Q
    ||||    
T  11402991 ttat 11402994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 225 - 326
Target Start/End: Complemental strand, 40331270 - 40331168
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagag-aaaaaatatgtcatt 323  Q
    ||||||||||||||||||  |||||||||||||||||||||||||  ||||  |||||||| ||| |||  ||||||| | ||| |||||||||||||||    
T  40331270 ctaagattttatcattctctaaaagttcaagtagcacataaatacatttttacaataaaaaacaatgaagaaacttaacaggagaaaaaaatatgtcatt 40331171  T
Q  324 tta 326  Q
    |||    
T  40331170 tta 40331168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 2589300 - 2589362
Alignment:
Q  227 aagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaa 289  Q
    ||||||||||||||||| |||||||||| | ||||||||||||  ||||||||||||||||||    
T  2589300 aagattttatcattctttaaaagttcaaattgcacataaatacatttttgaaataaaaagcaa 2589362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 32721170 - 32721092
Alignment:
Q  250 ttcaagtagcacataaatacgcttttgaaataaaaa-gcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    |||||| |||||||||||||  |||| ||||||||| ||||||||| ||||||| ||||||||| ||||||||||||||    
T  32721170 ttcaagcagcacataaatacattttttaaataaaaaagcaaagaataaacttaacaagagaaaatatatgtcattttat 32721092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 40692751 - 40692853
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    ||||||||||| |||||   |||||||||||||||| || |||||  ||||||||||||||| ||||||  ||||||  ||| |||||||| ||||||||    
T  40692751 ctaagattttaacattcactaaaagttcaagtagcatatgaatacatttttgaaataaaaagtaaagaagaaacttaccaagcgaaaaaatgtgtcattt 40692850  T
Q  325 tat 327  Q
    |||    
T  40692851 tat 40692853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 25715545 - 25715606
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaag 286  Q
    ||||||||||||||||||  |||||||||||||||||||||||||  |||| ||||||||||    
T  25715545 ctaagattttatcattctctaaaagttcaagtagcacataaatacattttttaaataaaaag 25715606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 226 - 327
Target Start/End: Complemental strand, 41805611 - 41805510
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatttt 325  Q
    |||||||||| |||||   |||||||||||||||| ||  |||| |||||||||||||||  ||||||  ||||||  |||||||||||| |||||||||    
T  41805611 taagattttaacattcactaaaagttcaagtagcatatgtatacacttttgaaataaaaaataaagaagaaacttatcaagagaaaaaatgtgtcatttt 41805512  T
Q  326 at 327  Q
    ||    
T  41805511 at 41805510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 293
Target Start/End: Complemental strand, 7591267 - 7591199
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaa 293  Q
    |||||||||||||||| |  |||||||||||||||||||||| ||  ||||||||||||||| ||||||    
T  7591267 ctaagattttatcattatctaaaagttcaagtagcacataaagacatttttgaaataaaaagtaaagaa 7591199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 293
Target Start/End: Complemental strand, 40109406 - 40109339
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaa 293  Q
    |||||||||||||||||   ||||||||| |||||| |||||||  ||||||||||||||||||||||    
T  40109406 taagattttatcattctatgaaagttcaaatagcacgtaaatacatttttgaaataaaaagcaaagaa 40109339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 8542069 - 8542012
Alignment:
Q  272 ttttgaaataaaaagcaaagaatgaacttaagaagagaa--aaaatatgtcattttat 327  Q
    |||||||||||||||||||||| |||||||| |||||||  |||||||||||||||||    
T  8542069 ttttgaaataaaaagcaaagaaagaacttaacaagagaaaaaaaatatgtcattttat 8542012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 327
Target Start/End: Complemental strand, 42920790 - 42920724
Alignment:
Q  261 cataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    |||||||||  |||||| |||||||| ||||||  ||||||| ||||||||||||||||||||||||    
T  42920790 cataaatacatttttgatataaaaagtaaagaagaaacttaacaagagaaaaaatatgtcattttat 42920724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 327
Target Start/End: Original strand, 14652754 - 14652854
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatttt 325  Q
    |||||||||||||||||  |||| |||||||| |||| ||||| | |||| |||||||||| |||||| ||| |||| |||| |||||| | ||||||||    
T  14652754 taagattttatcattctctaaaatttcaagtaacacaaaaatatgttttttaaataaaaagtaaagaaagaatttaacaaga-aaaaaaaaagtcatttt 14652852  T
Q  326 at 327  Q
    ||    
T  14652853 at 14652854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 293
Target Start/End: Complemental strand, 34881108 - 34881039
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaata-aaaagcaaagaa 293  Q
    ||||||||||||||||||  |||| ||||||| |||||||||||  ||||||||||| ||||||||||||    
T  34881108 ctaagattttatcattctctaaaaattcaagtggcacataaatatacttttgaaataaaaaagcaaagaa 34881039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 323
Target Start/End: Original strand, 36568015 - 36568107
Alignment:
Q  230 attttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatt 323  Q
    |||||||||||||  || ||||||||||| ||||||||||  |||||||| ||||| | |||||   |||||| ||||||||||||||||||||    
T  36568015 attttatcattctctaagagttcaagtagtacataaatacatttttgaaagaaaaaac-aagaagacacttaacaagagaaaaaatatgtcatt 36568107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 327
Target Start/End: Original strand, 39052852 - 39052953
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatttt 325  Q
    |||||||||||||| ||  ||||||||||||||||||||||||   |||| |||||||| | ||||||  || |||| ||||||| |||||| | |||||    
T  39052852 taagattttatcatactataaaagttcaagtagcacataaatatatttttaaaataaaatgtaaagaagaaatttaacaagagaacaaatatataatttt 39052951  T
Q  326 at 327  Q
    ||    
T  39052952 at 39052953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 327
Target Start/End: Original strand, 10090534 - 10090626
Alignment:
Q  235 atcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    ||||||||  || |||| |||||||||||||||||  |||| | | |||||||||||||  |||| || ||||||||||| ||||||||||||    
T  10090534 atcattctctaagagtttaagtagcacataaatacattttttatagaaaaagcaaagaagaaactcaacaagagaaaaaagatgtcattttat 10090626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 324
Target Start/End: Original strand, 18845812 - 18845911
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    ||||||||| || |||||| |||||||||| | ||| ||||||||  |||| |||||||| ||||||||  || |||| || |||||| |||||||||||    
T  18845812 ctaagatttcataattctttaaaagttcaaattgcatataaatacatttttaaaataaaaggcaaagaagaaatttaacaaaagaaaatatatgtcattt 18845911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 314
Target Start/End: Original strand, 4414516 - 4414605
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaa 314  Q
    ||||||||||| |||||   |||  |||||||| || || ||||| |||||||||||||||||||||||  ||||||  |||||||||||    
T  4414516 ctaagattttaacattcactaaagattcaagtaacatatgaatacacttttgaaataaaaagcaaagaagaaacttatcaagagaaaaaa 4414605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 327
Target Start/End: Complemental strand, 5175407 - 5175316
Alignment:
Q  236 tcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagag-aaaaaatatgtcattttat 327  Q
    |||||||| || |||||||||||| |||||||||  |||||| | |||||| ||||||  ||||||| ||||| |||||| ||||||||||||    
T  5175407 tcattctttaagagttcaagtagctcataaatac-attttgatagaaaaagaaaagaagaaacttaataagagaaaaaaaaatgtcattttat 5175316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 23418265 - 23418365
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    ||||||||||||||||||  |||||| ||| || || | |||||   ||| ||| ||||||| ||||||  ||||||| |||||||||||||||||| ||    
T  23418265 ctaagattttatcattctctaaaagtgcaattaacataaaaatat--tttagaagtaaaaagtaaagaagaaacttaacaagagaaaaaatatgtcagtt 23418362  T
Q  325 tat 327  Q
    |||    
T  23418363 tat 23418365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 317
Target Start/End: Original strand, 26690104 - 26690195
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatat 317  Q
    |||||||||||||||||  |||  || |||||| | |||||||   ||||||||||||||  ||||||  ||||||| ||||||||||||||    
T  26690104 taagattttatcattctataaactttgaagtagtatataaatatatttttgaaataaaaaataaagaagaaacttaacaagagaaaaaatat 26690195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 317
Target Start/End: Original strand, 26959836 - 26959927
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatat 317  Q
    |||||||||||||||||  |||  || |||||| | |||||||   ||||||||||||||  ||||||  ||||||| ||||||||||||||    
T  26959836 taagattttatcattctataaactttgaagtagtatataaatatatttttgaaataaaaaataaagaagaaacttaacaagagaaaaaatat 26959927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 327
Target Start/End: Original strand, 41455191 - 41455270
Alignment:
Q  248 agttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    ||||||||||  |||||| |||  |||||||| |||||| | ||||  || |||| ||||||||||||||||||||||||    
T  41455191 agttcaagtaatacataagtacatttttgaaagaaaaagtacagaaaaaagttaacaagagaaaaaatatgtcattttat 41455270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 35727272 - 35727368
Alignment:
Q  230 attttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    |||||||||||||  ||||||||||||| || ||||| |   |||||||||||||||  |||||  ||||||| || | |||||| ||||||||||||    
T  35727272 attttatcattctctaaaagttcaagtaacatataaacatatttttgaaataaaaagttaagaaaaaacttaacaata-aaaaaacatgtcattttat 35727368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 6718887 - 6718947
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaa 285  Q
    ||||||||||||||||||  |||| || ||||||  ||||||||  |||||||||||||||    
T  6718887 ctaagattttatcattctataaaattttaagtagtgcataaatatacttttgaaataaaaa 6718947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 44651257 - 44651359
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    |||||||||| |||||||  |||| ||||||||||||||||||||| |||| ||||||||| ||||||| |||  ||| |||||||||||||||||||||    
T  44651257 ctaagattttttcattctctaaaatttcaagtagcacataaatacgttttttaaataaaaaacaaagaaggaatctaacaagagaaaaaatatgtcattt 44651356  T
Q  325 tat 327  Q
    |||    
T  44651357 tat 44651359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 2832168 - 2832071
Alignment:
Q  230 attttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    |||||||||||||  ||||||||||||||||||||||||   |||||||||||||| |||||||  ||||||| ||||||||||| ||||||||||||    
T  2832168 attttatcattctcgaaaagttcaagtagcacataaatatatttttgaaataaaaaccaaagaagaaacttaacaagagaaaaaaaatgtcattttat 2832071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 226 - 324
Target Start/End: Original strand, 21562850 - 21562945
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    |||||||||||||||||| ||  |||||||||| ||||||||||  |||||||||||||||| ||||| |||||||| |||||||||||||||||||||    
T  21562850 taagattttatcattctttaa--gttcaagtagtacataaatacatttttgaaataaaaagcgaagaa-gaacttaacaagagaaaaaatatgtcattt 21562945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 42363005 - 42362905
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    ||||||||||||||||||  |||||| |||| |||||||||||||| ||||||||||||||| |||||| ||||| || ||||||||||  |||||||||    
T  42363005 ctaagattttatcattctctaaaagtacaagcagcacataaatacgtttttgaaataaaaagtaaagaaggaactaaacaagagaaaaa--atgtcattt 42362908  T
Q  325 tat 327  Q
    |||    
T  42362907 tat 42362905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 4280582 - 4280684
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    |||||||||||||||| |  |||||| |||||| ||| ||| |||  |||||||||||||| |||||||| ||||||| |||||||||||||||||||||    
T  4280582 ctaagattttatcattttctaaaagtgcaagtaacacgtaagtacatttttgaaataaaaaacaaagaataaacttaacaagagaaaaaatatgtcattt 4280681  T
Q  325 tat 327  Q
    |||    
T  4280682 tat 4280684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 225 - 324
Target Start/End: Complemental strand, 22472852 - 22472753
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    |||||||||||||||| |  |||||||||||||| ||||||||||  |||||||||||||  |||| ||  ||||||| |||||||||||||||||||||    
T  22472852 ctaagattttatcattttctaaaagttcaagtagaacataaatacatttttgaaataaaagacaaataagaaacttaacaagagaaaaaatatgtcattt 22472753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 327
Target Start/End: Original strand, 54122623 - 54122719
Alignment:
Q  231 ttttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    ||||||||||||  || ||||||||||||||||||||||  |||| ||| |||||||||| ||  |||||||  |||||||||||||||||| ||||    
T  54122623 ttttatcattctctaagagttcaagtagcacataaatacatttttaaaagaaaaagcaaataagaaacttaaccagagaaaaaatatgtcatattat 54122719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 232 - 327
Target Start/End: Original strand, 45629494 - 45629589
Alignment:
Q  232 tttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    |||||||||||| |||| ||||||||| |||||||||   |||||||| ||||| |||||||  ||||||| || | |||||||||||||||||||    
T  45629494 tttatcattctttaaaaattcaagtagtacataaatagatttttgaaagaaaaaacaaagaagaaacttaacaaaataaaaaatatgtcattttat 45629589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 44662231 - 44662332
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    ||||||||||||||||||| ||||||||||||| || |||||||   |||||||||||||| | |||||  ||| | | ||||||||||| |||||||||    
T  44662231 ctaagattttatcattctttaaaagttcaagtaacatataaatatatttttgaaataaaaaactaagaagaaacctgacaagagaaaaaa-atgtcattt 44662329  T
Q  325 tat 327  Q
    |||    
T  44662330 tat 44662332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 327
Target Start/End: Complemental strand, 25919034 - 25918939
Alignment:
Q  231 ttttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    ||||||||||||  || ||||||||||||||||||||||  |||||||| ||||| |||||||  ||||||| ||||  |||||| |||||||||||    
T  25919034 ttttatcattctctaagagttcaagtagcacataaatacatttttgaaacaaaaaacaaagaaaaaacttaacaaga-taaaaatttgtcattttat 25918939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 327
Target Start/End: Original strand, 48168973 - 48169069
Alignment:
Q  231 ttttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    ||||||||||||  || ||||||||||| ||||||||||  |||||||| ||| |||||||||  ||||||  |  |||||||||||||||||||||    
T  48168973 ttttatcattctctaagagttcaagtagtacataaatacatttttgaaagaaatagcaaagaagaaacttagcagaagaaaaaatatgtcattttat 48169069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 284
Target Start/End: Original strand, 4669026 - 4669085
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaa 284  Q
    |||| |||||||||||||  |||||||||||||||||||||||||  |||||||||||||    
T  4669026 ctaatattttatcattctctaaaagttcaagtagcacataaatacatttttgaaataaaa 4669085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 17144521 - 17144418
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttg-aaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatt 323  Q
    |||||||||||| | | || |||||||||| ||||| ||||||||  ||||  |||||||||||||||||| || |||| ||| |||||||||||| |||    
T  17144521 ctaagattttataaatatttaaaagttcaaatagcatataaatacatttttttaaataaaaagcaaagaataaatttaacaagtgaaaaaatatgttatt 17144422  T
Q  324 ttat 327  Q
    ||||    
T  17144421 ttat 17144418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 315
Target Start/End: Complemental strand, 10481405 - 10481315
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaat 315  Q
    |||||||||||||||| |  ||||||| |||||||||||||||||  |||||||||||||| | |||||  || |||| |||| |||||||    
T  10481405 ctaagattttatcattttctaaaagttaaagtagcacataaatacatttttgaaataaaaatctaagaagaaatttaacaagacaaaaaat 10481315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 314
Target Start/End: Original strand, 37045617 - 37045693
Alignment:
Q  236 tcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaa 314  Q
    |||||||  ||||||| |||||||||||||||||  |||| |||||||||||||| ||||||||||| |||||||||||    
T  37045617 tcattctctaaaagtt-aagtagcacataaatacattttt-aaataaaaagcaaataatgaacttaacaagagaaaaaa 37045693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 327
Target Start/End: Original strand, 20846770 - 20846871
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatttt 325  Q
    |||||||||||||||||  ||||||||||  |  |||||| |||  |||| |||||||||  ||||||  ||||| | ||||||||||||||||||||||    
T  20846770 taagattttatcattctctaaaagttcaaacaatacataattacattttttaaataaaaaataaagaagaaactttacaagagaaaaaatatgtcatttt 20846869  T
Q  326 at 327  Q
    ||    
T  20846870 at 20846871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 51660748 - 51660687
Alignment:
Q  266 atacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    |||| |||||||||||||||| ||||||  ||||||  ||||||||||||||||||||||||    
T  51660748 atacacttttgaaataaaaagtaaagaagaaacttatcaagagaaaaaatatgtcattttat 51660687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 232 - 327
Target Start/End: Original strand, 8355630 - 8355726
Alignment:
Q  232 tttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaa-gaagagaaaaaatatgtcattttat 327  Q
    |||||||||||  || ||||||||||||||||||||||  |||| | | ||||| |||||||  |||||||  ||||||||||| ||||||||||||    
T  8355630 tttatcattctctaagagttcaagtagcacataaatacattttttatagaaaaaacaaagaagaaacttaactaagagaaaaaaaatgtcattttat 8355726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 327
Target Start/End: Complemental strand, 45914985 - 45914887
Alignment:
Q  231 ttttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaa--aaaatatgtcattttat 327  Q
    ||||||||||||| || |||| |||||| ||||||||||  |||| ||| ||||| |||| ||  ||||||| |||||||  |||||||||||||||||    
T  45914985 ttttatcattctttaagagtttaagtagtacataaatacatttttaaaagaaaaaacaaacaagaaacttaacaagagaaaaaaaatatgtcattttat 45914887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 50578786 - 50578684
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaaga-gaaaaaatatgtcatt 323  Q
    ||||||||||||||||||  |||| ||||||| ||||||||  ||| |||| |||||||||| |||||| |||  ||| ||||  |||||||||||||||    
T  50578786 ctaagattttatcattctctaaaatttcaagtggcacataagcacg-tttttaaataaaaagtaaagaaagaatctaacaagataaaaaaatatgtcatt 50578688  T
Q  324 ttat 327  Q
    ||||    
T  50578687 ttat 50578684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 327
Target Start/End: Complemental strand, 55467422 - 55467328
Alignment:
Q  231 ttttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttat 327  Q
    ||||||||||||  || ||||||||||| ||||||||||  |||||||| |||||  | ||||  ||||||| || |||||||| ||||||||||||    
T  55467422 ttttatcattctctaagagttcaagtagtacataaatacatttttgaaagaaaaa--acagaagaaacttaacaaaagaaaaaacatgtcattttat 55467328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 293
Target Start/End: Complemental strand, 5640515 - 5640447
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaa 293  Q
    ||||||||||||||||||  |||| |||||||||||| |||||||| |  | ||||||||| |||||||    
T  5640515 ctaagattttatcattctctaaaatttcaagtagcacgtaaatacgttaattaaataaaaaccaaagaa 5640447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 55130036 - 55130077
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaa 266  Q
    |||||||||||||||| || |||||||||||||||| |||||    
T  55130036 ctaagattttatcattatttaaaagttcaagtagcaaataaa 55130077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 324
Target Start/End: Original strand, 26758531 - 26758623
Alignment:
Q  233 ttatcattcttaaaaagttcaagtagcacataaatacgcttttg-aaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    ||||||||||  || ||||||||||| |||| |||||  ||||  ||| |||||| ||| ||  ||||||| |||||||||||||||||||||    
T  26758531 ttatcattctgtaagagttcaagtagtacattaatacatttttttaaagaaaaagtaaataagaaacttaacaagagaaaaaatatgtcattt 26758623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 312
Target Start/End: Original strand, 27054396 - 27054460
Alignment:
Q  248 agttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaa 312  Q
    ||||||||||||||||||||||  |||||| | ||||| |||||||  ||||||| || ||||||    
T  27054396 agttcaagtagcacataaatacatttttgatagaaaaaacaaagaagaaacttaacaacagaaaa 27054460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 15320379 - 15320276
Alignment:
Q  225 ctaagattttatcattct-taaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatt 323  Q
    ||||||||||| |||||  |||||||||||||||||| |||||||| |||||||||||||| ||||||||  ||||||  ||||||||||||||| ||||    
T  15320379 ctaagattttaacattcactaaaaagttcaagtagcatataaatacacttttgaaataaaatgcaaagaagaaacttatcaagagaaaaaatatgccatt 15320280  T
Q  324 ttat 327  Q
    ||||    
T  15320279 ttat 15320276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 41166449 - 41166551
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    |||||||||||| |||||  |||||||||||||||| |||||||   |||||| |||||||||||||||  ||||||| ||||||||||| |||||||||    
T  41166449 ctaagattttattattctctaaaagttcaagtagcatataaatatatttttgacataaaaagcaaagaagaaacttaacaagagaaaaaacatgtcattt 41166548  T
Q  325 tat 327  Q
    |||    
T  41166549 tat 41166551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 36964279 - 36964383
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataa--atacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcat 322  Q
    |||||||||||||||||| ||||||||||| | ||||||||  ||||  | ||||||||||||| ||||||  ||||||| |||||||||||||||||||    
T  36964279 ctaagattttatcattctcaaaaagttcaacttgcacataagtatacattgttgaaataaaaagaaaagaagcaacttaacaagagaaaaaatatgtcat 36964378  T
Q  323 tttat 327  Q
    |||||    
T  36964379 tttat 36964383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 226 - 327
Target Start/End: Original strand, 13194198 - 13194301
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaaga--agagaaaaaatatgtcatt 323  Q
    |||||||||||||||||  ||||||| || |||||||||||||   ||||||||||||||||||||||  ||||||| |  |||||||||||||||||||    
T  13194198 taagattttatcattctctaaaagtttaattagcacataaatatatttttgaaataaaaagcaaagaagaaacttaacaagagagaaaaaatatgtcatt 13194297  T
Q  324 ttat 327  Q
    ||||    
T  13194298 ttat 13194301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 225 - 324
Target Start/End: Original strand, 1331288 - 1331387
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    |||||||||||| |||||| ||||||||||||||||||||||||   ||||||||||||||| ||||||  ||||||| |||  ||||| ||||||||||    
T  1331288 ctaagattttattattctttaaaagttcaagtagcacataaatatatttttgaaataaaaagtaaagaaaaaacttaacaagcaaaaaagtatgtcattt 1331387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 22014255 - 22014356
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    |||||||||||| |||||| ||||||| ||||||||||||||||   ||||||  ||||||||||||||  ||||||| ||||| |||||||||||||||    
T  22014255 ctaagattttattattctttaaaagtttaagtagcacataaatatatttttgacttaaaaagcaaagaagaaacttaacaagag-aaaaatatgtcattt 22014353  T
Q  325 tat 327  Q
    |||    
T  22014354 tat 22014356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 231 - 327
Target Start/End: Complemental strand, 5862440 - 5862343
Alignment:
Q  231 ttttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaa-aaaatatgtcattttat 327  Q
    ||||||||||||  || ||||||||||||||||||||||  |||||||| |||||||||||||  ||||| | ||||||| |||||||||||||||||    
T  5862440 ttttatcattctctaatagttcaagtagcacataaatacatttttgaaagaaaaagcaaagaagaaactttacaagagaaaaaaatatgtcattttat 5862343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 225 - 325
Target Start/End: Complemental strand, 27301280 - 27301180
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    ||||||||||| ||||||  ||||||||||||||||||||  |||  ||||||||||||||||||||||  | ||||| |||||| ||||||||| ||||    
T  27301280 ctaagattttaacattctctaaaagttcaagtagcacatagctacatttttgaaataaaaagcaaagaagaagcttaacaagagagaaaatatgtaattt 27301181  T
Q  325 t 325  Q
    |    
T  27301180 t 27301180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 232 - 326
Target Start/End: Complemental strand, 31719860 - 31719767
Alignment:
Q  232 tttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatttta 326  Q
    |||||||||||  |||||||||||||||| |||||||   |||| |||||||||||| ||||  ||||||| |||||||||||||||||||||||    
T  31719860 tttatcattctctaaaagttcaagtagcatataaatatatttttaaaataaaaagcagagaa-aaacttaacaagagaaaaaatatgtcatttta 31719767  T

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Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 327
Target Start/End: Original strand, 44085785 - 44085886
Alignment:
Q  228 agattttatcattcttaaaaagttcaagtagcacataaatac--gcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatttt 325  Q
    |||||||||||||||  |||| ||||||||||||||||||||    |||| |||||||||| |||||| |||  ||| || |||||||||||||||||||    
T  44085785 agattttatcattctctaaaatttcaagtagcacataaatacattttttttaaataaaaagtaaagaaagaatctaacaaaagaaaaaatatgtcatttt 44085884  T
Q  326 at 327  Q
    ||    
T  44085885 at 44085886  T

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Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 327
Target Start/End: Original strand, 27898639 - 27898730
Alignment:
Q  236 tcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagag-aaaaaatatgtcattttat 327  Q
    |||||||  ||||||||||||||||| |||||||| |||| |||| |||||||||||| |||||||| | ||| ||||||||||| |||||||    
T  27898639 tcattctctaaaagttcaagtagcacgtaaatacgttttttaaat-aaaagcaaagaaggaacttaacacgagaaaaaaatatgtaattttat 27898730  T

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Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 327
Target Start/End: Complemental strand, 36500412 - 36500314
Alignment:
Q  227 aagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatttta 326  Q
    ||||||||||||||||    |||||||||||| ||||||||||  ||||||||||||||||||||||  ||||| | ||||||| ||||||| |||||||    
T  36500412 aagattttatcattctctgtaagttcaagtagaacataaataca-ttttgaaataaaaagcaaagaagaaactt-acaagagaacaaatatgccatttta 36500315  T

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Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 325
Target Start/End: Original strand, 17763048 - 17763141
Alignment:
Q  232 tttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatttt 325  Q
    |||||||||||  |||  |||||||||||| ||| |||  ||||||||||||||| |||  |  ||||||| ||||||||||||||||||||||    
T  17763048 tttatcattctataaattttcaagtagcacgtaagtacatttttgaaataaaaagtaaaagagaaacttaacaagagaaaaaatatgtcatttt 17763141  T

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Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 327
Target Start/End: Complemental strand, 30514728 - 30514629
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatttt 325  Q
    |||||||||||||||||  ||||||||||||| |||||||||||  ||||||||||||||| ||||||  || | || |||| ||||||||  |||||||    
T  30514728 taagattttatcattctctaaaagttcaagta-cacataaatac-attttgaaataaaaagaaaagaagaaaataaacaagataaaaaatagatcatttt 30514631  T

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Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 230 - 324
Target Start/End: Complemental strand, 11051191 - 11051095
Alignment:
Q  230 attttatcattcttaaaaagttcaagtagcacataaatac-gcttttgaaat-aaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 324  Q
    |||||||||||||  |||||||||||||||| ||||||||   ||||||||| ||||| |||||||  |||||||  |||||||||| |||||||||    
T  11051191 attttatcattctctaaaagttcaagtagcatataaatacattttttgaaataaaaaaacaaagaagaaacttaacgagagaaaaaacatgtcattt 11051095  T

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Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 30759420 - 30759356
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaa 290  Q
    |||||||||||||||||  |||| ||||||||| |||||||||   |||||||||||||||||||    
T  30759420 taagattttatcattctataaaatttcaagtagtacataaatatatttttgaaataaaaagcaaa 30759356  T

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Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 320
Target Start/End: Original strand, 43452417 - 43452512
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtc 320  Q
    ||||||||||| |||||   |||||||||||||||| || ||||| |||||| ||||||| |||| |||  ||||||  || ||||||||||||||    
T  43452417 ctaagattttaacattcactaaaagttcaagtagcatatgaatacacttttgcaataaaatgcaatgaagaaacttatcaaaagaaaaaatatgtc 43452512  T

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Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 34572703 - 34572638
Alignment:
Q  257 agcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatt 323  Q
    ||||||||| |||  |||||||||||||| |||||||  ||||||| ||||||||||||||||||||    
T  34572703 agcacataagtacatttttgaaataaaaa-caaagaagaaacttaacaagagaaaaaatatgtcatt 34572638  T

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Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 314
Target Start/End: Complemental strand, 12041380 - 12041291
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaa 314  Q
    |||| |||||||||||||  ||| ||||||| ||||||| |||||  ||||||||||||||| ||||||  ||||| | || ||||||||    
T  12041380 ctaatattttatcattctctaaaggttcaaggagcacatgaatacatttttgaaataaaaagtaaagaagaaactttataatagaaaaaa 12041291  T

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Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 11377448 - 11377404
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatac 269  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||    
T  11377448 ctaagattttatcattctctaaaagttcaaatagcacataaatac 11377404  T

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Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 28790825 - 28790897
Alignment:
Q  245 aaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatat 317  Q
    |||| ||||||||| |||||||||   |||||||||||||| |||||||  ||||||| |||||| |||||||    
T  28790825 aaaatttcaagtagaacataaatatatttttgaaataaaaaacaaagaagaaacttaacaagagagaaaatat 28790897  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 27962429 - 27962389
Alignment:
Q  272 ttttgaaataaaaagcaaagaatgaacttaagaagagaaaa 312  Q
    ||||||||||||||||||||||  ||||||| |||||||||    
T  27962429 ttttgaaataaaaagcaaagaagaaacttaataagagaaaa 27962389  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 301
Target Start/End: Complemental strand, 44741869 - 44741793
Alignment:
Q  225 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaactta 301  Q
    ||||||||||||||||||  |||| |||||||||||| || ||||  || | |||||||||||| | || |||||||    
T  44741869 ctaagattttatcattctctaaaaattcaagtagcacgtagatacatttattaaataaaaagcacataaggaactta 44741793  T

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Target: scaffold0664 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 327
Target Start/End: Original strand, 6277 - 6378
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatttt 325  Q
    |||||||||||||||||  ||||||||||||| |||||||| |   ||| ||||||||||| ||||||  ||||||| ||||||||||||||||||| ||    
T  6277 taagattttatcattctctaaaagttcaagtaacacataaaaatattttagaaataaaaagtaaagaagaaacttaacaagagaaaaaatatgtcatgtt 6376  T
Q  326 at 327  Q
    ||    
T  6377 at 6378  T

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Target: scaffold0001 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 226 - 327
Target Start/End: Original strand, 427941 - 428042
Alignment:
Q  226 taagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcatttt 325  Q
    |||||||||||||||||  || | |||  ||| ||||||||||   |||||||||||||||  |||||  ||||||| ||||||||||||||||||||||    
T  427941 taagattttatcattctctaacaattcttgtaacacataaatatatttttgaaataaaaaggcaagaagaaacttaacaagagaaaaaatatgtcatttt 428040  T
Q  326 at 327  Q
    ||    
T  428041 at 428042  T

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