View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11980_low_65 (Length: 316)
Name: NF11980_low_65
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 23875676 - 23875392
Alignment:
| Q |
18 |
aaagcactaaaaccgaattatatcacataaagtaaccctagtcttagatataaacacaatcatctaaagattgaaaacagatcagatctaagccttcttt |
117 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23875676 |
aaagcactaaaaccgatttatatcacataaagtaaccctagtcttagatataaacacaatcatctaaagattgaaaacagatcagatctaagccttcttt |
23875577 |
T |
|
| Q |
118 |
ggagactttccagccttctttggctccttaggagcagttttttcagtcttcttaggcaagaggatggggttaatgtttggaagaacaccaccatgagcaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
23875576 |
ggagactttccagccttctttggctccttagtatcagttttttcattcttcttaggcaataggattgggttaatgtttggaagaacaccaccatgagcaa |
23875477 |
T |
|
| Q |
218 |
tggtaacaccattaagcaatttaccaagctcttcatcattcctaacagccaacaacacatgccttggaatgattctattcttctt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23875476 |
tggtaacaccattaagcaatttaccaagttcttcatcattcctaacagccaacaacacatgccttggaatgattctattcttctt |
23875392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 23423277 - 23423561
Alignment:
| Q |
18 |
aaagcactaaaaccgaattatatcacataaagtaaccctagtcttagatataaacacaatcatctaaagattgaaaacagatcagatctaagccttcttt |
117 |
Q |
| |
|
|||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23423277 |
aaagcactaaaaccgatttctatgacataaagtaaccctagtcttagatataaacacaatcatctaaagattgaaaacagatcagatctaagccttcttt |
23423376 |
T |
|
| Q |
118 |
ggagactttccagccttctttggctccttaggagcagttttttcagtcttcttaggcaagaggatggggttaatgtttggaagaacaccaccatgagcaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||| |||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
23423377 |
ggagactttccagccttctttggctccttagaaacagaattttcaatcttcttaggcaaaaggatagggttaatgtttggaagaacaccaccatgagcaa |
23423476 |
T |
|
| Q |
218 |
tggtaacaccattaagcaatttaccaagctcttcatcattcctaacagccaacaacacatgccttggaatgattctattcttctt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23423477 |
tggtaacaccattaagcaatttaccaagatcttcatcattcctaacagccaacaacacatgccttggaatgattctattcttctt |
23423561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 98 - 302
Target Start/End: Complemental strand, 24298387 - 24298183
Alignment:
| Q |
98 |
atcagatctaagccttctttggagactttccagccttctttggctccttaggagcagttttttcagtcttcttaggcaagaggatggggttaatgtttgg |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||| ||||| |||||||||||||| |
|
|
| T |
24298387 |
atcagatctaagccttctttggagactttccagccttctttggctccttaggaacagctttttcattcttcttaggcaaaaggattgggttaatgtttgg |
24298288 |
T |
|
| Q |
198 |
aagaacaccaccatgagcaatggtaacaccattaagcaatttaccaagctcttcatcattcctaacagccaacaacacatgccttggaatgattctattc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24298287 |
aagaacaccaccatgagcaatggtaacaccattaagcaatttaccaagctcttcatcattcctaacagccaacaacacatgccttggaatgattctattc |
24298188 |
T |
|
| Q |
298 |
ttctt |
302 |
Q |
| |
|
||||| |
|
|
| T |
24298187 |
ttctt |
24298183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 101 - 302
Target Start/End: Original strand, 23447851 - 23448061
Alignment:
| Q |
101 |
agatctaagccttctttggagactttccagcctt---------ctttggctccttaggagcagttttttcagtcttcttaggcaagaggatggggttaat |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||| || ||||||| | ||| |||||||||||||||||||| ||||| ||||| || |
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|
| T |
23447851 |
agatctaagccttctttggagactttccagcttttttgggagacttaggttccttagaaacagccttttcagtcttcttaggcaaaaggattgggttgat |
23447950 |
T |
|
| Q |
192 |
gtttggaagaacaccaccatgagcaatggtaacaccattaagcaatttaccaagctcttcatcattcctaacagccaacaacacatgccttggaatgatt |
291 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23447951 |
gttgggaaaaacaccaccatgagcaatggtaacaccattaagcaatttaccaagttcttcatcattcctaacagccaacaacacatgccttggaatgatt |
23448050 |
T |
|
| Q |
292 |
ctattcttctt |
302 |
Q |
| |
|
||||||||||| |
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|
| T |
23448051 |
ctattcttctt |
23448061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 158 - 302
Target Start/End: Complemental strand, 26828088 - 26827944
Alignment:
| Q |
158 |
tttcagtcttcttaggcaagaggatggggttaatgtttggaagaacaccaccatgagcaatggtaacaccattaagcaatttaccaagctcttcatcatt |
257 |
Q |
| |
|
||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||| ||||||||| ||||| ||| ||||||||||||||||| |
|
|
| T |
26828088 |
tttcagtcttcttaggcaacagaattgggttaatgttcggaagaacaccaccatgagcaattgtaacaccagcaagcagttttccaagctcttcatcatt |
26827989 |
T |
|
| Q |
258 |
cctaacagccaacaacacatgccttggaatgattctattcttctt |
302 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26827988 |
cctaacagccaacaacaaatgccttggaatgattctattcttctt |
26827944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 302
Target Start/End: Original strand, 23446603 - 23446707
Alignment:
| Q |
198 |
aagaacaccaccatgagcaatggtaacaccattaagcaatttaccaagctcttcatcattcctaacagccaacaacacatgccttggaatgattctattc |
297 |
Q |
| |
|
||||| ||||||||||||||| |||||||| ||| | ||| ||||| |||||||||||| ||||||| ||||||| |||||||||||| ||||||||| |
|
|
| T |
23446603 |
aagaataccaccatgagcaattgtaacacctacaagtagtttcccaagttcttcatcattcataacagcaaacaacaaatgccttggaataattctattc |
23446702 |
T |
|
| Q |
298 |
ttctt |
302 |
Q |
| |
|
||||| |
|
|
| T |
23446703 |
ttctt |
23446707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 26828160 - 26828124
Alignment:
| Q |
98 |
atcagatctaagccttctttggagactttccagcctt |
134 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
26828160 |
atcagatctaagctttcttaggagactttccagcctt |
26828124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 184 - 302
Target Start/End: Complemental strand, 35961844 - 35961726
Alignment:
| Q |
184 |
gggttaatgtttggaagaacaccaccatgagcaatggtaacaccattaagcaatttaccaagctcttcatcattcctaacagccaacaacacatgccttg |
283 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
35961844 |
gggttaatattaggaagaacaccaccatgagcaatggtaacaccagcaagcaatttcccaagctcttcatcattcctcacagccaacaacacatgccttg |
35961745 |
T |
|
| Q |
284 |
gaatgattctattcttctt |
302 |
Q |
| |
|
|||| || ||||||||||| |
|
|
| T |
35961744 |
gaataatcctattcttctt |
35961726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 158 - 302
Target Start/End: Original strand, 41244323 - 41244467
Alignment:
| Q |
158 |
tttcagtcttcttaggcaagaggatggggttaatgtttggaagaacaccaccatgagcaatggtaacaccattaagcaatttaccaagctcttcatcatt |
257 |
Q |
| |
|
||||||||||||||||||| || | ||||| ||||||||||||||||||||||| ||||| ||||| ||| | ||||| || |||||||||||||| |
|
|
| T |
41244323 |
tttcagtcttcttaggcaaaagcacagggttgatgtttggaagaacaccaccatgtgcaattgtaactccagctaataattttcctagctcttcatcatt |
41244422 |
T |
|
| Q |
258 |
cctaacagccaacaacacatgccttggaatgattctattcttctt |
302 |
Q |
| |
|
||| || ||||||||||| ||||||||||| || ||||||||||| |
|
|
| T |
41244423 |
cctcactgccaacaacacgtgccttggaattatcctattcttctt |
41244467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 164 - 302
Target Start/End: Complemental strand, 41257965 - 41257827
Alignment:
| Q |
164 |
tcttcttaggcaagaggatggggttaatgtttggaagaacaccaccatgagcaatggtaacaccattaagcaatttaccaagctcttcatcattcctaac |
263 |
Q |
| |
|
||||||||||||| ||||| ||||| ||||||||||||||||| ||||| ||||| ||||||||| | |||||| ||||| |||||||| ||||| || |
|
|
| T |
41257965 |
tcttcttaggcaaaaggattgggttgatgtttggaagaacacctccatgtgcaattgtaacaccagctaacaattttccaagttcttcatcgttcctcac |
41257866 |
T |
|
| Q |
264 |
agccaacaacacatgccttggaatgattctattcttctt |
302 |
Q |
| |
|
|||||||||||| ||||| || ||||| || |||||||| |
|
|
| T |
41257865 |
agccaacaacacgtgcctagggatgatcctgttcttctt |
41257827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 41251923 - 41251856
Alignment:
| Q |
157 |
ttttcagtcttcttaggcaagaggatggggttaatgtttggaagaacaccaccatgagcaatggtaac |
224 |
Q |
| |
|
|||||||||||||| ||||| | || ||||| ||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
41251923 |
ttttcagtcttctttggcaacaacatagggttgatgttaggaagaacaccaccacgagcaatggtaac |
41251856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 247 - 302
Target Start/End: Complemental strand, 12165197 - 12165142
Alignment:
| Q |
247 |
tcttcatcattcctaacagccaacaacacatgccttggaatgattctattcttctt |
302 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12165197 |
tcttcatcgttcctaacagccaacaacacatgccttggaatgattctattcttctt |
12165142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 30437128 - 30437072
Alignment:
| Q |
197 |
gaagaacaccaccatgagcaatggtaacaccattaagcaatttaccaagctcttcat |
253 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| | ||||||| |||||||||||| |
|
|
| T |
30437128 |
gaagaacaccaccatgagcaatggtaactccagcatgcaatttttcaagctcttcat |
30437072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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