View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_66 (Length: 313)
Name: NF11980_low_66
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_66 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 43049321 - 43049030
Alignment:
| Q |
1 |
atgatatctatgtgaggctttactttaggattaggttcagacttggggatttgatatctggtgattacaagcctaaggtgaaatgtgacctcaaagttcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
43049321 |
atgatatctatgtgaggctttactttaggattaggttcagacttggggatttgatatcgggtgattacaagcctaaggtgaaatgtgacttcaaagttcc |
43049222 |
T |
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| Q |
101 |
tttgagttctaaaattagcaatgcaacattcactaggaccaagtgtgatgttgatttctactaatgtcagcatctgatcgttttcttggcacaacagtat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43049221 |
tttgagttctaaaattagcaatgcaacattcactaggaccaagtgtgatgttgatttctactaatgtcagcatctgatcgttttcttggcacaacagtat |
43049122 |
T |
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| Q |
201 |
tcatagggatttcatttctttacggttttcttcattannnnnnnnctgtacgtgatatttgttgttgttctattcattctttggttgtacat |
292 |
Q |
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| T |
43049121 |
tcataaggatttgatttctttacggttttcttcattattttttttctgtacgtgatatttgttgttgttctattcattctttggttgtacat |
43049030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 43062102 - 43062002
Alignment:
| Q |
5 |
tatctatgtgaggctttactttaggattaggttcagacttggggatttgatatctggtgattacaagcctaaggtgaaatgtgacctcaaagttcctttg |
104 |
Q |
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||||||||||| ||| ||||| ||||||||||||| |||||| || | ||||||| | |||||||||||||| |||||||||||||||||||| ||| |
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| T |
43062102 |
tatctatgtgaagctctacttcaggattaggttcaaacttggagactcgatatctcgcacatacaagcctaaggtcaaatgtgacctcaaagttccattg |
43062003 |
T |
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| Q |
105 |
a |
105 |
Q |
| |
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| |
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| T |
43062002 |
a |
43062002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 43054855 - 43054750
Alignment:
| Q |
1 |
atgatatctatgtgaggctttactttaggattaggttcagacttggggatttgatatctggtgattacaagcctaaggtgaaatgtgacctcaaagttcc |
100 |
Q |
| |
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||||||||||||||| ||| ||||||||||||||||| | |||||| || | ||||| | | | ||| |||||||| ||||| ||||||| |||||| |
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| T |
43054855 |
atgatatctatgtgaagctctactttaggattaggtttaaacttggagactccatatccagaaagttcaaacctaaggtcaaatgcgacctcacagttcc |
43054756 |
T |
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| Q |
101 |
tttgag |
106 |
Q |
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|||||| |
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| T |
43054755 |
tttgag |
43054750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 43024170 - 43024059
Alignment:
| Q |
1 |
atgatatctatgtgaggctttactttaggattaggttcagacttggggatttgatatctggtgattacaagcctaaggtgaaatgtgacctcaaagttcc |
100 |
Q |
| |
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||||||||||||||| || ||||| ||||| |||||||| ||| || |||||| |||| | ||| || || ||||||||||||||||||||||| |
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| T |
43024170 |
atgatatctatgtgaaactctacttcgaaattagattcagactcgggaatgtgatatttggtcgtatcaatccgaaagtgaaatgtgacctcaaagttcc |
43024071 |
T |
|
| Q |
101 |
tttgagttctaa |
112 |
Q |
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||||| |||||| |
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| T |
43024070 |
tttgaattctaa |
43024059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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