View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_7 (Length: 643)
Name: NF11980_low_7
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 20 - 356
Target Start/End: Complemental strand, 30677865 - 30677529
Alignment:
| Q |
20 |
atcaagatcatgtaatgtcacaattgaagaaacaaagtcaggaaaaattcactttgagaattaacgaatggaaacagaagcatgcctttttgagttagaa |
119 |
Q |
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| T |
30677865 |
atcaagatcatgtaatgacataattgaagaaacaaagtcaggaaaaattcactttgagaattaacgaatggaaacagaagcatgcctttttgagttagaa |
30677766 |
T |
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| Q |
120 |
caattcactattctattgtctaaacagaagcaaattcaattagagagcattatgggattttgcatggcaagtcattgttgatacaataactcaatac-nn |
218 |
Q |
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| T |
30677765 |
caattcactattctattgtctaaacagaagcaaattcaattagagagcattatgggattttgcatggcaagtcaatgttgatacaataactcaatacttt |
30677666 |
T |
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| Q |
219 |
nnnnnnnngatagaaaaatgtggagtagaacccaataattaaattttttaccaccttataggtcagaataaatatttattgatcagaaacaacatttaag |
318 |
Q |
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| T |
30677665 |
ttttttttgatagaaaaatgtggagtagaacccaataattaaattttttaccaccttataggtcagaataaatatttattgatcagaaacaacatttaa- |
30677567 |
T |
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| Q |
319 |
ccctttagagtagtccaaagcttggccatcattatagt |
356 |
Q |
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| T |
30677566 |
ccctttagagtagtccaaagcttggccatcattatagt |
30677529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 390 - 569
Target Start/End: Complemental strand, 30677533 - 30677355
Alignment:
| Q |
390 |
atagttgagaaatgttagggtcacacctttggacacactcttttaacacacacccacaacaatcatagctcaccacatcattattttctctctcactagt |
489 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| ||||||| | |||||||||| |
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| T |
30677533 |
atagttgagaaatgctaggatcacacctttggacacactcttttaacacacacccacaccaatcatagctgatcacatccttattttttttctcactagt |
30677434 |
T |
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| Q |
490 |
ttgactgcaactttgtcttctccaagtttaaacgcatcagaacaaagaaaaacaacaagcttcatggcccattctccttc |
569 |
Q |
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| T |
30677433 |
ttgactgcaac-ttgtcttctccaagtttaaacgcatcagaacatagaaaaacaacaagcttcatggcccattctccttc |
30677355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 561 - 627
Target Start/End: Complemental strand, 30677336 - 30677270
Alignment:
| Q |
561 |
ttctccttcggattcaatctgtcactccttccaatttgtatcacacaaactatgtcgtacttctccc |
627 |
Q |
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| T |
30677336 |
ttctccttcggattcagtctgtcgctccttccaatttgtatcacacaaactatgtcgtacttctccc |
30677270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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