View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_75 (Length: 283)
Name: NF11980_low_75
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_75 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 30871546 - 30871287
Alignment:
| Q |
18 |
agatcaatgataaaaatattaaaat-gttaagttagacataatgatcaagattcaaactcgacttctgcacttgtgttaatgagtaagttttcaatggtt |
116 |
Q |
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| T |
30871546 |
agatcaatgataaaaatattaaaattgttaagttagacataatgatcaagattcaaactcgacttctccacttgtgttaatgagtaagttttcaatagtt |
30871447 |
T |
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| Q |
117 |
attgtcatttcaactatctacaaaacaaaaactactatcctccataaagcctaatttaactgacaatgacaatattattagattagacatttcaaattca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
30871446 |
attgtcatttcaactatctacaaaacaaaaactactatcctccataaagcctaattcaactgacgatgacaatattattagactagacatttcaaattca |
30871347 |
T |
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| Q |
217 |
aaaccttac--ttacatgtgtatgagttttcgactttccgtatagcttgtcacttcttct |
274 |
Q |
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||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
30871346 |
aaaccttacagttacatgtatatgagttttcgactttccgtgtagcttgtcacttcttct |
30871287 |
T |
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