View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_79 (Length: 271)
Name: NF11980_low_79
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_79 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 46374717 - 46374478
Alignment:
| Q |
19 |
aggaaggtgtgtgtattgaatagtgaaaccatacatctcttgaaagtattcgactactgacttcattgttgaattctcatccacaggaaacctaaagtaa |
118 |
Q |
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| T |
46374717 |
aggaaggtgtgtgtattgaatagtgaaaccatacatctcttgaaagtattcgactactgacttcattgttgaattctcatccacaggaaacctaaagtaa |
46374618 |
T |
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| Q |
119 |
taaatcatcattaaaaattgatcaaattcaaaattgttataactagtttgatttttgagaaaagtatcttacacaagttctcttgttggttgagaagtca |
218 |
Q |
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| T |
46374617 |
taaatcatcattaaaaattgatcaaattcaaaatcgttataactagtttgatttttgagaaaagtatcttacacaagttctcttgttggttgagaagtca |
46374518 |
T |
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| Q |
219 |
accctgaaacacggtattttcttcttacacttcctctgtg |
258 |
Q |
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| T |
46374517 |
accctgaaacacggtattttcttcttacacttcctctgtg |
46374478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 15409209 - 15409114
Alignment:
| Q |
19 |
aggaaggtgtgtgtattgaatagtgaaaccatacatctcttgaaagtattcgactactgacttcattgttgaattctcatccacaggaaacctaaa |
114 |
Q |
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| T |
15409209 |
aggaaggtgtgtatgtttaatagtgaaaccatacatttcttggaagtattcaaccactgatttcatagtcgagttctcatcaacaggaaacctaaa |
15409114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 15409030 - 15408958
Alignment:
| Q |
186 |
cttacacaagttctcttgttggttgagaagtcaaccctgaaacacggtattttcttcttacacttcctctgtg |
258 |
Q |
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| T |
15409030 |
cttacacaagttctcttgttggttgagaagttatgccggaaacacgatactttcttctaacactccctctgtg |
15408958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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