View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_8 (Length: 636)
Name: NF11980_low_8
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 541; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 1 - 617
Target Start/End: Complemental strand, 33938870 - 33938254
Alignment:
| Q |
1 |
aaactatatataagaagctagattcacattttattaacaacacccctcacaaatccacttgataattcatacttgataccccctagcaaaagaaaattca |
100 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
33938870 |
aaactatatataagaagctagattcatattttattaacaacacccctcacaaagccacttgataattcgtacttgatacaccctagcaaaagaaaattca |
33938771 |
T |
|
| Q |
101 |
taatattattacacttttgttatttgcatatacaagtttataaactcttgaagagacctttgtccttcaatacagtagtttatccggttcgagtgattaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33938770 |
taatattattacacttttgttatttgcatatataagtttataaactcttgaagagacctttgtccttcaatacactagtttatccggttcgagtgattaa |
33938671 |
T |
|
| Q |
201 |
tctttgcaactgctttagaacgatatttgattttcgtaagctcaaaaacaatcctactatatagtgagagatgatgaagaacgcgggattcgagcacgtt |
300 |
Q |
| |
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|||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33938670 |
tctttgcatctgcgttagaacgatatttgattttcataagctcaaaaacaatcctactatatagtgagagatgatgaagaacgcgggattcgagcatgtt |
33938571 |
T |
|
| Q |
301 |
cttagatattttgatgaagatggtgacggaaaggtttcaccagcagagctaagacaaaggctaagaataatgggagaagagattttattgaaagaagctg |
400 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33938570 |
cttagatattttgacgaagatggtgatggaaaggtttcaccagcagagctaagacaaaggctaagaataatgggagaagagattttattgaaagaagctg |
33938471 |
T |
|
| Q |
401 |
aaatggctattgaagcaatggattcagatggtgatgattatttgagtttggaggaattaattgctttgatggaggaagggggagaggaacaaaagttgaa |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
33938470 |
aaatggctattgaagcaatggattcagatggtgatggttatttgagtttggaggaattaattgctttgatggaagaaggtggagaggaacaaaagttgaa |
33938371 |
T |
|
| Q |
501 |
ggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaagaggatgcttaagaagatgggggaaactaag |
600 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| |
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| T |
33938370 |
ggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacaccaaagagtttgaagaggatgcttaagaagatgggtgagtctaag |
33938271 |
T |
|
| Q |
601 |
tctattgatgaatgtaa |
617 |
Q |
| |
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||||||||||||||||| |
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| T |
33938270 |
tctattgatgaatgtaa |
33938254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 273 - 617
Target Start/End: Complemental strand, 33931793 - 33931449
Alignment:
| Q |
273 |
gatgaagaacgcgggattcgagcacgttcttagatattttgatgaagatggtgacggaaaggtttcaccagcagagctaagacaaaggctaagaataatg |
372 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33931793 |
gatgaagaatgcgggattcgagcatgttcttagatattttgacgaagatggtgatggaaaggtttcaccagcagagctaagacaaaggctaagaataatg |
33931694 |
T |
|
| Q |
373 |
ggagaagagattttattgaaagaagctgaaatggctattgaagcaatggattcagatggtgatgattatttgagtttggaggaattaattgctttgatgg |
472 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33931693 |
ggagaagagattttattgaaagaagctgaaatggctattgaagcaatggattcagatggtgatggttatttgagtttggaggaattaattgctttgatgg |
33931594 |
T |
|
| Q |
473 |
aggaagggggagaggaacaaaagttgaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaagag |
572 |
Q |
| |
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| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33931593 |
aagaaggtggagaggaacaaaagttgaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacaccaaagagtttgaagag |
33931494 |
T |
|
| Q |
573 |
gatgcttaagaagatgggggaaactaagtctattgatgaatgtaa |
617 |
Q |
| |
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|||||||||||||||||| || |||||||||||||||||||||| |
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| T |
33931493 |
gatgcttaagaagatgggtgagtctaagtctattgatgaatgtaa |
33931449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 5e-27; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 387 - 617
Target Start/End: Complemental strand, 42840097 - 42839867
Alignment:
| Q |
387 |
attgaaagaagctgaaatggctattgaagcaatggattcagatggtgatgattatttgagtttggaggaattaattgctttgatggaggaagggggagag |
486 |
Q |
| |
|
||||||||||| || || |||||||| ||| ||||||| |||||||||| | |||||||||||||| || || || | ||||| |||||||||| |
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| T |
42840097 |
attgaaagaagtggagattgctattgaggcattggattctgatggtgatgggttattgagtttggaggatttgatagcgctaatggaatcagggggagag |
42839998 |
T |
|
| Q |
487 |
gaacaaaagttgaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaagaggatgcttaagaaga |
586 |
Q |
| |
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||| |||| |||||||||||||| ||||| ||||| ||||||||| ||| |||||| | |||||||| |||||||||||||||||| | || ||| |
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| T |
42839997 |
gaagaaaaattgaaggatttgagggaagcttttgaaatgtatgatgatgaagggtgtgggtacataacaccaaagagtttgaagaggatgttgaaaaagt |
42839898 |
T |
|
| Q |
587 |
tgggggaaactaagtctattgatgaatgtaa |
617 |
Q |
| |
|
||||||| ||||||| ||||| |||||||| |
|
|
| T |
42839897 |
tgggggattctaagtccattgaagaatgtaa |
42839867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 387 - 614
Target Start/End: Complemental strand, 42846905 - 42846678
Alignment:
| Q |
387 |
attgaaagaagctgaaatggctattgaagcaatggattcagatggtgatgattatttgagtttggaggaattaattgctttgatggaggaagggggagag |
486 |
Q |
| |
|
||||||||||| |||||| |||||||| ||| ||||||| |||||||||| | |||||||||| || || ||| | || ||||| |||||||||| |
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|
| T |
42846905 |
attgaaagaagttgaaattgctattgaggcattggattctgatggtgatgggttattgagtttgggagatttgattacgttaatggaatcagggggagag |
42846806 |
T |
|
| Q |
487 |
gaacaaaagttgaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaagaggatgcttaagaaga |
586 |
Q |
| |
|
|| |||| |||||||||||||| ||||| ||||| |||||||||| ||| ||||| || ||||| || || ||||||||||||||| | || || |
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| T |
42846805 |
gaggaaaaattgaaggatttgagggaagcttttgaaatgtatgataatgaaggatgtggattcataacgccaaaaagtttgaagaggatgttgaaaaaac |
42846706 |
T |
|
| Q |
587 |
tgggggaaactaagtctattgatgaatg |
614 |
Q |
| |
|
||||||| ||||||| ||||| ||||| |
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|
| T |
42846705 |
tgggggattctaagtccattgaagaatg |
42846678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 387 - 614
Target Start/End: Complemental strand, 42849892 - 42849665
Alignment:
| Q |
387 |
attgaaagaagctgaaatggctattgaagcaatggattcagatggtgatg-attatttgagtttggaggaattaattgctttgatggaggaagggggaga |
485 |
Q |
| |
|
||||||||||| ||||| || ||||| ||| ||||||| |||||||||| |||||| |||||||||||| || || | ||||| ||||||||| |
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|
| T |
42849892 |
attgaaagaagtggaaattgcaattgaggcattggattctgatggtgatggattatt-gagtttggaggatttgataaagcttatggaatcagggggaga |
42849794 |
T |
|
| Q |
486 |
ggaacaaaagttgaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacacctaagagtttgaagaggatgcttaagaag |
585 |
Q |
| |
|
|||| |||| |||||||||||||| ||||| ||||| |||||||||| ||| ||||| || |||||||| || ||||||||||||||| | || || |
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|
| T |
42849793 |
ggaagaaaaattgaaggatttgagggaagcttttgaaatgtatgataatgaaggatgtggattcataacaccaaaaagtttgaagaggatgttgaaaaaa |
42849694 |
T |
|
| Q |
586 |
atgggggaaactaagtctattgatgaatg |
614 |
Q |
| |
|
||||||| ||||||| ||||| ||||| |
|
|
| T |
42849693 |
ctgggggattctaagtccattgaagaatg |
42849665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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