View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11980_low_81 (Length: 267)
Name: NF11980_low_81
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_81 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 28430386 - 28430634
Alignment:
| Q |
19 |
gagacaaggtacaaaaattcaaagttggagacaaggtaggtgttgggtgcatggttcaatcctgccactcatgccaaaattgcaacgaaagtctcgaaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28430386 |
gagacaaggtacaaaaattcaaagttggagacaaggtaggtgttgggtgcatggttcaatcctgccactcatgccaaaattgcaacgaaagtctcgaaaa |
28430485 |
T |
|
| Q |
119 |
ttactgtccaaaagtgattctcacatacggttccaagaatcttgatggcaccatcacatatggaggctactccgacacaatggtcaccgacgaaagcttt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28430486 |
ttactgtccaaaagtgattctcacatacggttccaagaatcttgatggcaccatcacatatggaggctactccgacacaatggtcaccgacgaaagcttt |
28430585 |
T |
|
| Q |
219 |
gtgatcagcattccaaatagcctacctcttgatgctgcagctcctctcc |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28430586 |
gtgatcagcattccaaatagcctacctcttgatgctgcagctcctctcc |
28430634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 202
Target Start/End: Complemental strand, 13379264 - 13379099
Alignment:
| Q |
37 |
tcaaagttggagacaaggtaggtgttgggtgcatggttcaatcctgccactcatgccaaaattgcaacgaaagtctcgaaaattactgtccaaaagtgat |
136 |
Q |
| |
|
||||||||||||| | ||| ||||| |||||||||||| ||||||||| ||||| |||| ||| ||| |||||||||||| || |||| |||| |
|
|
| T |
13379264 |
tcaaagttggagatagggttggtgtggggtgcatggttggatcctgccattcatgtcaaagttgtggcgaggatctcgaaaattattgctcaaagatgat |
13379165 |
T |
|
| Q |
137 |
tctcacatacggttccaagaatcttgatggcaccatcacatatggaggctactccgacacaatggt |
202 |
Q |
| |
|
|| |||||| ||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
13379164 |
tcagacatacagttccaagaatgttgatggcactatcacatatggaggctactctgacaccatggt |
13379099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 190
Target Start/End: Complemental strand, 13373469 - 13373315
Alignment:
| Q |
36 |
ttcaaagttggagacaaggtaggtgttgggtgcatggttcaatcctgccactcatgccaaaattgcaacgaaagtctcgaaaattactgtccaaaagtga |
135 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||| ||| || |||||| ||||| || |||| ||| |
|
|
| T |
13373469 |
ttcaaagttggagacaaggtaggtgtagggtgcatggttggatcctgccactcatgtcaaagttgtggtgatgatctcgagaattattgctcaaagatga |
13373370 |
T |
|
| Q |
136 |
ttctcacatacggttccaagaatcttgatggcaccatcacatatggaggctactc |
190 |
Q |
| |
|
| |||||||| || |||||||| ||||||| || |||||||||||||||||||| |
|
|
| T |
13373369 |
tcctcacatatggcgccaagaatattgatggaacaatcacatatggaggctactc |
13373315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 13419602 - 13419498
Alignment:
| Q |
161 |
tgatggcaccatcacatatggaggctactccgacacaatggtcaccgacgaaagctttgtgatcagcattccaaatagcctacctcttgatgctgcagct |
260 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||| ||||||| | ||||| ||||||||| ||||||| ||||| |||||||||||||||| | | |
|
|
| T |
13419602 |
tgatggcaccgtcacatatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatgctgccggt |
13419503 |
T |
|
| Q |
261 |
cctct |
265 |
Q |
| |
|
||||| |
|
|
| T |
13419502 |
cctct |
13419498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 13447153 - 13447049
Alignment:
| Q |
161 |
tgatggcaccatcacatatggaggctactccgacacaatggtcaccgacgaaagctttgtgatcagcattccaaatagcctacctcttgatgctgcagct |
260 |
Q |
| |
|
||||||||| ||||| |||||||| | ||||||| ||||||| | ||||| ||||||||| ||||||| ||||| |||||||||||| ||| | | |
|
|
| T |
13447153 |
tgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatggtgccggt |
13447054 |
T |
|
| Q |
261 |
cctct |
265 |
Q |
| |
|
||||| |
|
|
| T |
13447053 |
cctct |
13447049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University