View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_85 (Length: 259)
Name: NF11980_low_85
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_85 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 42450116 - 42450380
Alignment:
| Q |
1 |
agtccaagaaacatttctttctcattttcgccaagtcgggacactggtatacccgtcaataggctaacaaccaaagctattaggtctggtt--------- |
91 |
Q |
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| T |
42450116 |
agtccaagaaacctttctttctcattttcactaagtcgggacactggtatacccgtcaataggctaacaaccaaacctattaggtctggttcaacagttt |
42450215 |
T |
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| Q |
92 |
ttgtcaacatcaagctcttatcggtgctatcttcaagtcgttgaattgcatcttccacatcatcaatcgcaccatatcgtaggcttgcagctcttgctat |
191 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42450216 |
ttgtcaacatcaagcttttatcggtgctatcttcaagtcgttgaattgcatcttccacatcatcaatcgcaccatatcgtaggcttgcagctcttgctat |
42450315 |
T |
|
| Q |
192 |
atcattccgcctctcagcctcctgtagagacaagataagctcttcacgtttctgcttcagccttt |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42450316 |
atcattccgcctctcagcctcctgtagagacaagataagctcttcacgtttctgcttcagccttt |
42450380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 256
Target Start/End: Original strand, 742862 - 743132
Alignment:
| Q |
3 |
tccaagaaacatttctttctcattttcgccaagtcgggacactggtatacccgtcaataggctaacaaccaaagctattaggtctggt------------ |
90 |
Q |
| |
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|||||||||| ||||||||||||||||||||| | ||| ||||||||| || ||||||||||||||||||| ||| ||||||| | || |
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| T |
742862 |
tccaagaaacctttctttctcattttcgccaatttgggtcactggtatgccggtcaataggctaacaaccatagcaattaggttttgtactccagcacag |
742961 |
T |
|
| Q |
91 |
-----tttgtcaacatcaagctcttatcggtgctatcttcaagtcgttgaattgcatcttccacatcatcaatcgcaccatatcgtaggcttgcagctct |
185 |
Q |
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| T |
742962 |
cagtttctgtcaacattaagctctcatcagtgctatctccaagcagctgaattgcatcttccacgtcatcaatcgcaccatatcgtagacttgcagctct |
743061 |
T |
|
| Q |
186 |
tgctatatcattccgcctctcagcctcctgtagagacaagataagctcttcacgtttctgcttcagccttt |
256 |
Q |
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| T |
743062 |
ttctatatcatgccgcctctcagcctcctgtagagacaagataagctcttcgcttttcagcttcagccttt |
743132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 255
Target Start/End: Complemental strand, 45467616 - 45467496
Alignment:
| Q |
135 |
aattgcatcttccacatcatcaatcgcaccatatcgtaggcttgcagctcttgctatatcattccgcctctcagcctcctgtagagacaagataagctct |
234 |
Q |
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||||||| |||||| || ||||| ||||||||||| ||| ||||||||||||| ||||| ||||||||| ||||||||||| | |||| |||||| |
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| T |
45467616 |
aattgcagtttccacctcttcaattgcaccatatcgcaggtccgcagctcttgctagatcataccgcctctctgcctcctgtagtgcaaagaggagctct |
45467517 |
T |
|
| Q |
235 |
tcacgtttctgcttcagcctt |
255 |
Q |
| |
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| T |
45467516 |
tcacgtttctgcttcagcctt |
45467496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 136 - 251
Target Start/End: Complemental strand, 10045762 - 10045647
Alignment:
| Q |
136 |
attgcatcttccacatcatcaatcgcaccatatcgtaggcttgcagctcttgctatatcattccgcctctcagcctcctgtagagacaagataagctctt |
235 |
Q |
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||||||| |||||| || ||||| ||||||||||||||| ||||||||| |||| ||||| ||||||||||||||| ||||| | |||| ||||||| |
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| T |
10045762 |
attgcattttccacctcttcaattgcaccatatcgtaggtctgcagctctggctagatcataccgcctctcagcctcttgtagtgcaaagaggagctctt |
10045663 |
T |
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| Q |
236 |
cacgtttctgcttcag |
251 |
Q |
| |
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|||||||||| ||||| |
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| T |
10045662 |
cacgtttctgtttcag |
10045647 |
T |
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