View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_89 (Length: 251)
Name: NF11980_low_89
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_89 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 24214425 - 24214198
Alignment:
| Q |
11 |
cacagacattagacgcttcatggtctcggtttgacccatccggcaaaaacattttccaataccaatcggttttatccatcgaacagatgggtacccgttt |
110 |
Q |
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| T |
24214425 |
cacaaacattagacgcttcatggtctcggtttgacccatccggcaaaaacattttccaataccaatcggttttatccatcgaacagatgggtacccgttt |
24214326 |
T |
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| Q |
111 |
caatcgaatctcagattcagttcgttcctctcctccnnnnnnnggttggatcgaaaccagtccaataaccttcaaaacccgaaaatcctctaaggaaacc |
210 |
Q |
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| T |
24214325 |
caatcgaatctcagactcagttcgttcctctcctccaaaaaaaggttggatcgaaaccagtccaataaccttcaaaacccgaaaatcctctaaggaaacc |
24214226 |
T |
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| Q |
211 |
cgagcagccacatgatgggccaagtttc |
238 |
Q |
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| T |
24214225 |
cgagcagccacatgatgggccaagtttc |
24214198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 24228581 - 24228519
Alignment:
| Q |
24 |
cgcttcatggtctcggtttgacccatccggcaaaaacattttccaataccaatcggttttatccat |
89 |
Q |
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|||||||||||| || ||||| |||||| | |||||| |||||||||||||||||||||||||| |
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| T |
24228581 |
cgcttcatggtcccgatttgatccatccag---aaacatcttccaataccaatcggttttatccat |
24228519 |
T |
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