View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11980_low_9 (Length: 635)

Name: NF11980_low_9
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11980_low_9
NF11980_low_9
[»] chr5 (16 HSPs)
chr5 (6-619)||(40402016-40402634)
chr5 (15-78)||(17037564-17037627)
chr5 (15-84)||(9333577-9333646)
chr5 (17-84)||(5079082-5079149)
chr5 (17-84)||(12042195-12042262)
chr5 (17-84)||(31068981-31069047)
chr5 (17-84)||(7410839-7410906)
chr5 (17-84)||(9354407-9354474)
chr5 (15-78)||(19985016-19985079)
chr5 (20-78)||(10869458-10869516)
chr5 (15-72)||(37233059-37233116)
chr5 (15-68)||(42076078-42076131)
chr5 (18-84)||(30786282-30786348)
chr5 (43-84)||(18191893-18191934)
chr5 (16-84)||(23679456-23679524)
chr5 (16-84)||(23855287-23855355)
[»] chr3 (14 HSPs)
chr3 (14-78)||(26707880-26707944)
chr3 (17-84)||(16457349-16457416)
chr3 (11-84)||(2550181-2550254)
chr3 (18-78)||(5498499-5498559)
chr3 (17-84)||(13846007-13846074)
chr3 (17-67)||(9633460-9633510)
chr3 (15-84)||(1627963-1628032)
chr3 (11-84)||(1654591-1654664)
chr3 (21-76)||(2943236-2943291)
chr3 (17-84)||(7407772-7407839)
chr3 (28-78)||(27259474-27259524)
chr3 (17-78)||(1613231-1613292)
chr3 (17-78)||(36035310-36035371)
chr3 (18-84)||(35082991-35083057)
[»] chr8 (15 HSPs)
chr8 (17-84)||(29345446-29345513)
chr8 (17-83)||(6403609-6403675)
chr8 (17-84)||(28249093-28249160)
chr8 (17-84)||(45356130-45356197)
chr8 (18-84)||(25638822-25638888)
chr8 (17-78)||(6801848-6801909)
chr8 (18-78)||(5650964-5651024)
chr8 (17-84)||(17634489-17634556)
chr8 (11-84)||(5528758-5528831)
chr8 (17-84)||(25637659-25637726)
chr8 (17-84)||(29553644-29553711)
chr8 (18-84)||(31347364-31347430)
chr8 (15-84)||(19369926-19369995)
chr8 (15-84)||(19448463-19448532)
chr8 (15-84)||(19532544-19532613)
[»] chr6 (17 HSPs)
chr6 (17-84)||(16734820-16734887)
chr6 (17-71)||(29667933-29667987)
chr6 (17-84)||(15361730-15361797)
chr6 (18-84)||(23264515-23264581)
chr6 (17-84)||(11936785-11936852)
chr6 (17-84)||(11948765-11948832)
chr6 (17-84)||(12591848-12591915)
chr6 (15-84)||(15690453-15690522)
chr6 (17-78)||(23904370-23904431)
chr6 (15-78)||(4485581-4485644)
chr6 (15-84)||(6684109-6684177)
chr6 (15-84)||(14669362-14669431)
chr6 (22-78)||(9631178-9631234)
chr6 (18-78)||(10935800-10935860)
chr6 (12-78)||(4591171-4591237)
chr6 (15-84)||(17719739-17719808)
chr6 (11-76)||(34374848-34374915)
[»] chr4 (10 HSPs)
chr4 (21-84)||(48464055-48464118)
chr4 (19-78)||(24559015-24559074)
chr4 (17-84)||(4904158-4904225)
chr4 (17-84)||(43600282-43600349)
chr4 (17-84)||(47066052-47066119)
chr4 (15-84)||(4881085-4881154)
chr4 (15-84)||(1684968-1685037)
chr4 (23-83)||(21539295-21539355)
chr4 (17-76)||(53300374-53300433)
chr4 (46-84)||(1152059-1152097)
[»] chr2 (11 HSPs)
chr2 (15-78)||(11017478-11017541)
chr2 (18-78)||(41573414-41573474)
chr2 (17-84)||(30267018-30267085)
chr2 (17-84)||(31342734-31342801)
chr2 (15-84)||(7718200-7718269)
chr2 (17-78)||(24479173-24479234)
chr2 (17-76)||(15513690-15513749)
chr2 (17-76)||(40016614-40016673)
chr2 (17-78)||(7702450-7702511)
chr2 (17-66)||(22966558-22966607)
chr2 (17-84)||(44920973-44921039)
[»] chr1 (13 HSPs)
chr1 (17-78)||(12189973-12190034)
chr1 (15-84)||(28636918-28636987)
chr1 (18-78)||(3399643-3399703)
chr1 (19-84)||(897470-897535)
chr1 (17-78)||(5911682-5911743)
chr1 (17-84)||(16222793-16222860)
chr1 (16-78)||(15214348-15214410)
chr1 (18-70)||(1843981-1844033)
chr1 (18-78)||(15204615-15204675)
chr1 (18-76)||(13208635-13208693)
chr1 (17-78)||(39368658-39368719)
chr1 (17-84)||(51758768-51758835)
chr1 (30-84)||(37097371-37097425)
[»] scaffold0576 (1 HSPs)
scaffold0576 (17-84)||(6714-6781)
[»] chr7 (12 HSPs)
chr7 (17-84)||(4685421-4685488)
chr7 (17-84)||(26224996-26225063)
chr7 (17-75)||(26608557-26608615)
chr7 (15-84)||(9242500-9242569)
chr7 (17-78)||(26205433-26205494)
chr7 (17-78)||(30089756-30089817)
chr7 (17-84)||(20277378-20277445)
chr7 (26-84)||(26619130-26619188)
chr7 (18-84)||(26621110-26621176)
chr7 (17-84)||(10022139-10022206)
chr7 (17-67)||(16086519-16086569)
chr7 (18-67)||(16170303-16170352)
[»] scaffold0684 (1 HSPs)
scaffold0684 (15-84)||(763-832)
[»] scaffold0069 (1 HSPs)
scaffold0069 (15-84)||(40714-40783)


Alignment Details
Target: chr5 (Bit Score: 490; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 6 - 619
Target Start/End: Original strand, 40402016 - 40402634
Alignment:
Q  6 agcagcacagactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaatgttgcagtgattagaccctc- 104  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  40402016 agcaacacagactttacctaacaattgttcaaacgtaactaaatttaattagtaacatttttctttatttagtcacaatgttgtagtgattagaccctcc 40402115  T
Q  105 --ctttgtacaaataaaagagacatgataaattaattaaagatgaagaacctgaattaatttgaaagtttaattacagagtataaataaatctaaaattg 202  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40402116 tcctttgtacaaataaaagagacatgataaattaattaaagatgaagaacctgaattaatttgaaagtttaattacagagtataaataaatctaaaattg 40402215  T
Q  203 caaatgaaggaataattgaaagtaaaactacatttgaagacaatgttctagagagagcttctctgccttcattctggaaaccccaccactcgctcttaac 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40402216 caaatgaaggaataattgaaagtaaaactacatttgaagacaatgttctagagagagcttctctgccttcattctgaaaaccccaccactcgctcttaac 40402315  T
Q  303 aaactgccgtcaccaccaagctcttgttctcccacatcatccaaacactattcaacaagatgtagccacggtgttagtggtgca-tttcctcaccgtcgt 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  40402316 aaactgccgtcaccaccaagctcttgttctcccacatcatccaaacactattcagcaagatgtagccacggtgttagtggtgcattttcctcaccgtcgt 40402415  T
Q  402 accaccttaaaccccattgaagtgacaactaatccaaatctcgaagtagttggctagcactaaatttaatgagctcctctatcaacattgnnnnnnnnnn 501  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||              
T  40402416 accaccttaaaccccattgaagtgacaaataatccaaatctcgaagtagttggctcgcactaaatttaatgagctcctctatcaacattgtttttttttt 40402515  T
Q  502 nnnnnnnggagaacaagagagtttaagcccaaagcag-aaactaactcctgattaaacgaggtgtagaaacaccaatactattagctaaaaataattaac 600  Q
           |||||||| ||||||||||||||||||| | |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  40402516 tttttttggagaacatgagagtttaagcccaaagcggaaaactaactcctaattaaacgaggtgtagaaacatcaatactattagctaaaaataattaac 40402615  T
Q  601 taactcgaacacaatattg 619  Q
    ||||||||||| |||||||    
T  40402616 taactcgaacagaatattg 40402634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 17037627 - 17037564
Alignment:
Q  15 gactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||    
T  17037627 gactttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagt 17037564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 9333577 - 9333646
Alignment:
Q  15 gactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |||| || |||||    
T  9333577 gactttacctaacaattgctcaaatgttactaaatttaattagtaacatttttcttgattttgttacaat 9333646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 5079082 - 5079149
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||||||||||||||||||  ||  ||||||||||||||||||||||||||| ||||||| |||||    
T  5079082 ctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaat 5079149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 12042195 - 12042262
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||||||||||||||||||| || |||||||| ||| ||||||||||||||| ||||||| |||||    
T  12042195 ctttacctaacaattgttcaaatgttactaaattgaatcagtaacatttttcttgatttagttacaat 12042262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 31068981 - 31069047
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||||||||||||||||| | || ||||||||||||||||||||||||||| ||||||| |||||    
T  31068981 ctttacctaacaattgttcaatgtta-ctaaatttaattagtaacatttttcttgatttagttacaat 31069047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 7410906 - 7410839
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||||||||||||||||||  ||  |||||||||||||||||||||||| || ||||||| |||||    
T  7410906 ctttacctaacaattgttcaagtgttgctaaatttaattagtaacattttttttgatttagttacaat 7410839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 9354407 - 9354474
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||||||||||||| ||||| || | |||||||||||||||||||||||||| ||| ||| |||||    
T  9354407 ctttacctaacaattgctcaaatgttattaaatttaattagtaacatttttcttgattcagttacaat 9354474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 19985079 - 19985016
Alignment:
Q  15 gactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    ||||||||||||||||| |||||| || ||||||| |||||||||||||||| ||| |||||||    
T  19985079 gactttacctaacaattattcaaatgttactaaatctaattagtaacattttccttgatttagt 19985016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 10869516 - 10869458
Alignment:
Q  20 tacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    ||||||||||||||||||| || |||||||||||||||||||| ||||| | |||||||    
T  10869516 tacctaacaattgttcaaatgttactaaatttaattagtaacaattttcatgatttagt 10869458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 37233116 - 37233059
Alignment:
Q  15 gactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttcttta 72  Q
    |||| ||||||||||||| ||||| || ||||||||||||||||||| ||||||||||    
T  37233116 gactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttcttta 37233059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 42076131 - 42076078
Alignment:
Q  15 gactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttc 68  Q
    ||||||| |||||||||||||||| || |||||||||||||||||||| |||||    
T  42076131 gactttatctaacaattgttcaaatgttactaaatttaattagtaacaattttc 42076078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 30786348 - 30786282
Alignment:
Q  18 tttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||||||||||| |||||| || |||||||| ||| ||||||||||||||| ||| ||| |||||    
T  30786348 tttacctaacaattattcaaatgttactaaattgaatcagtaacatttttcttgattaagttacaat 30786282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 18191893 - 18191934
Alignment:
Q  43 actaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||||||||||||||||||||||||| ||||||| |||||    
T  18191893 actaaatttaattagtaacatttttcttaatttagttacaat 18191934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 23679524 - 23679456
Alignment:
Q  16 actttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||| |||| |||||||| || ||  | ||||||||||| ||||||||||||| ||||||| |||||    
T  23679524 actttatctaataattgttcgaatgttgcaaaatttaattaataacatttttcttgatttagttacaat 23679456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 23855287 - 23855355
Alignment:
Q  16 actttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||| |||| |||||||| || ||  | ||||||||||| ||||||||||||| ||||||| |||||    
T  23855287 actttatctaataattgttcgaatgttgcaaaatttaattaataacatttttcttgatttagttacaat 23855355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 26707944 - 26707880
Alignment:
Q  14 agactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||    
T  26707944 agactttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagt 26707880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 16457349 - 16457416
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||||||||||||| ||||| || |||||||||||||||||||||||||||| ||||||| |||||    
T  16457349 ctttacctaacaattgctcaaatgttactaaatttaattagtaacatttttcttgatttagttacaat 16457416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 2550254 - 2550181
Alignment:
Q  11 cacagactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||| |||||||||||||||||||||  ||  ||||||||||||||||||||||||||| ||||||| |||||    
T  2550254 cacaggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaat 2550181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 5498559 - 5498499
Alignment:
Q  18 tttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    ||||||||||||||||||| | || |||||||||||||||||||||||||||| |||||||    
T  5498559 tttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagt 5498499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 13846074 - 13846007
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||||||||||||||||||  ||  ||||||||||||||||||||||||||| ||||||| |||||    
T  13846074 ctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaat 13846007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 9633460 - 9633510
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacattttt 67  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  9633460 ctttacctaacaattgtttaaatgtaactaaatttaattagtaacattttt 9633510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 1627963 - 1628032
Alignment:
Q  15 gactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||||| ||||||||||||||  || |||||||||||||||||| ||||||||| ||||||| |||||    
T  1627963 gactttacttaacaattgttcaagtgttactaaatttaattagtaatatttttcttgatttagttacaat 1628032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 1654664 - 1654591
Alignment:
Q  11 cacagactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||| |||||| ||||||||||||||  ||  ||||||||||||||||||||||||||| ||||||| |||||    
T  1654664 cacaggctttacttaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaat 1654591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 2943236 - 2943291
Alignment:
Q  21 acctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttattta 76  Q
    ||||||||||||||| || || |||||||||||||||||||||||||||| |||||    
T  2943236 acctaacaattgttcgaatgttactaaatttaattagtaacatttttcttgattta 2943291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 7407772 - 7407839
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||||||||||||||||||  ||  ||||||||||||||||| ||||||||| ||||||| |||||    
T  7407772 ctttacctaacaattgttcaagtgttgctaaatttaattagtaatatttttcttgatttagttacaat 7407839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 27259474 - 27259524
Alignment:
Q  28 aattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    ||||||||||| || |||||||||||||||||||||||| ||| |||||||    
T  27259474 aattgttcaaatgttactaaatttaattagtaacattttgcttgatttagt 27259524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 1613231 - 1613292
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    |||||||||| ||||| ||||  || |||||||||| ||||||||||||||||| |||||||    
T  1613231 ctttacctaaaaattggtcaactgttactaaatttatttagtaacatttttcttgatttagt 1613292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 36035371 - 36035310
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    ||||||||||||||||| |||  || |||||||||||||||||  ||||||||| |||||||    
T  36035371 ctttacctaacaattgtacaattgttactaaatttaattagtattatttttcttgatttagt 36035310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 35083057 - 35082991
Alignment:
Q  18 tttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||| ||||||||||||||||  | |||||||||| ||| ||||||||||||| |||| || |||||    
T  35083057 tttatctaacaattgttcaaatattactaaatttatttactaacatttttcttgattttgtaacaat 35082991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 29345513 - 29345446
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||    
T  29345513 ctttacctaacaattgttcaaaggttactaaatttaattagtaatatttttcttgatttagttacaat 29345446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 6403675 - 6403609
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaa 83  Q
    |||||||||||||||| ||||| || |||||||||||||||||||||||||||| ||||||| ||||    
T  6403675 ctttacctaacaattgctcaaatgttactaaatttaattagtaacatttttcttaatttagttacaa 6403609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 28249093 - 28249160
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||||||||||||||||||  ||  ||||||||||||||||||||||||||| ||||||| |||||    
T  28249093 ctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaat 28249160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 45356130 - 45356197
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||||||||||||||||||  ||  ||||||||||||||||||||||||||| ||||||| |||||    
T  45356130 ctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaat 45356197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 25638888 - 25638822
Alignment:
Q  18 tttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||||||||||||||||  ||  ||||||||||||||||||||||||||| ||||||| |||||    
T  25638888 tttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaat 25638822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 6801848 - 6801909
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    |||||||||||||||||||||  || ||||||||||||||||||||||||| || |||||||    
T  6801848 ctttacctaacaattgttcaactgttactaaatttaattagtaacatttttattgatttagt 6801909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 5650964 - 5651024
Alignment:
Q  18 tttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    ||||||||||||||||||||| ||  ||||||| ||||||||||||||||||| |||||||    
T  5650964 tttacctaacaattgttcaaatgttgctaaattgaattagtaacatttttcttgatttagt 5651024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 17634489 - 17634556
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||||| |||||||||||  || | |||||||||||||||||||||||||| ||||||| |||||    
T  17634489 ctttacctatcaattgttcaagtgttattaaatttaattagtaacatttttcttgatttagttacaat 17634556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 5528831 - 5528758
Alignment:
Q  11 cacagactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||||||| ||||||||||||  |  ||  ||||||||||||||||||||||||||| ||||||| |||||    
T  5528831 cacagactttatctaacaattgtttgagtgttgctaaatttaattagtaacatttttcttgatttagttacaat 5528758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 25637726 - 25637659
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||||||||||||||| |  ||  ||||||||||||||||||| ||||||| ||||||| |||||    
T  25637726 ctttacctaacaattgttcgagtgttgctaaatttaattagtaacagttttcttaatttagttacaat 25637659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 29553711 - 29553644
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||| |||||||||| ||||| ||  ||||||||||||||||||||||||||| |||| || |||||    
T  29553711 ctttaactaacaattgctcaaatgttgctaaatttaattagtaacatttttcttgatttggttacaat 29553644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 31347430 - 31347364
Alignment:
Q  18 tttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||| |||||||||| ||||| || ||||||||||||||||| |||||||||| |||| || |||||    
T  31347430 tttatctaacaattgatcaaatgttactaaatttaattagtagcatttttcttgatttggttacaat 31347364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 19369926 - 19369995
Alignment:
Q  15 gactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||| ||||||||||||| |  ||  | ||||||||||||||||||||||||| ||||||| |||||    
T  19369926 gactttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttcttgatttagttacaat 19369995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 19448532 - 19448463
Alignment:
Q  15 gactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||| ||||||||||||| |  ||  | ||||||||||||||||||||||||| ||||||| |||||    
T  19448532 gactttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttcttgatttagttacaat 19448463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 19532544 - 19532613
Alignment:
Q  15 gactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||| ||||||||||||| |  ||  | ||||||||||||||||||||||||| ||||||| |||||    
T  19532544 gactttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttcttgatttagttacaat 19532613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 16734887 - 16734820
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||||||||||||||||||| ||  ||||||||||||||||||||||||||| ||||||| |||||    
T  16734887 ctttacctaacaattgttcaaatgttgctaaatttaattagtaacatttttcttgatttagttacaat 16734820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 29667933 - 29667987
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttcttt 71  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  29667933 ctttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcttt 29667987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 15361797 - 15361730
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||||||||||||||||||  ||  ||||||||||||||||||||||||||| ||||||| |||||    
T  15361797 ctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaat 15361730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 23264515 - 23264581
Alignment:
Q  18 tttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||||||||||||||| || || |||||||||||||||||||| ||||||| ||||||| |||||    
T  23264515 tttacctaacaattgttcgaatgttactaaatttaattagtaacaattttcttgatttagtaacaat 23264581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 11936785 - 11936852
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||| |||||||||||||||  ||  ||||||||||||||||||||||||||| ||||||| |||||    
T  11936785 ctttatctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaat 11936852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 11948765 - 11948832
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||| |||||||||||||||  ||  ||||||||||||||||||||||||||| ||||||| |||||    
T  11948765 ctttatctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaat 11948832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 12591915 - 12591848
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||||||||||||||| |  || |||||||||||||| ||||||||||||| ||||||| |||||    
T  12591915 ctttacctaacaattgttcgagcgttactaaatttaattactaacatttttcttgatttagttacaat 12591848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 15690522 - 15690453
Alignment:
Q  15 gactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||| ||||||||||||  |  || |||||||||||||||||||||||||||| ||||||| |||||    
T  15690522 gactttagctaacaattgtttgagtgtcactaaatttaattagtaacatttttcttgatttagttacaat 15690453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 23904370 - 23904431
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    |||||||||||||||||||||| || |||||||| | |||||||| |||||||| |||||||    
T  23904370 ctttacctaacaattgttcaaatgttactaaattgatttagtaacttttttcttcatttagt 23904431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 4485581 - 4485644
Alignment:
Q  15 gactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    ||||||||||||||||| ||||||  | ||||||||||||||||| |||||| ||| |||||||    
T  4485581 gactttacctaacaattattcaaatattactaaatttaattagtaccattttccttgatttagt 4485644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 6684177 - 6684109
Alignment:
Q  15 gactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||||||||||||| |||| |  || |||||||||||||||||||||||||||| ||| ||| |||||    
T  6684177 gactttacctaacaat-gttcgagtgttactaaatttaattagtaacatttttcttgattaagttacaat 6684109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 14669362 - 14669431
Alignment:
Q  15 gactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||||||||||||| ||| |  ||  | ||||||||||||||||||||||||| ||||||| |||||    
T  14669362 gactttacctaacaattattcgagtgttgcaaaatttaattagtaacatttttcttgatttagttacaat 14669431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 9631178 - 9631234
Alignment:
Q  22 cctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    ||||||||||||||||| || |||||||||| |||||||| || ||||| |||||||    
T  9631178 cctaacaattgttcaaatgttactaaatttacttagtaacgttcttcttgatttagt 9631234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 10935800 - 10935860
Alignment:
Q  18 tttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    ||||||||||||||||||||| || |||  || |||||||||||||||||| | |||||||    
T  10935800 tttacctaacaattgttcaaatgttactggatataattagtaacatttttcatgatttagt 10935860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 4591237 - 4591171
Alignment:
Q  12 acagactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    ||||||| |||||||||||||| ||||||| | | | ||||||  |||||||||||||| |||||||    
T  4591237 acagactatacctaacaattgtacaaaggttattgattttaatcggtaacatttttcttgatttagt 4591171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 17719739 - 17719808
Alignment:
Q  15 gactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||| ||||||||||||| |  ||  | ||| ||||||||||||||||||||| ||||||| |||||    
T  17719739 gactttatctaacaattgttcgagtgttgcaaaaattaattagtaacatttttcttgatttagttacaat 17719808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 34374915 - 34374848
Alignment:
Q  11 cacagactttacctaacaatt--gttcaaaggtaactaaatttaattagtaacatttttctttattta 76  Q
    |||||| ||| ||||||||||  ||||||| || || |||| |||||||||||||||||||| |||||    
T  34374915 cacagattttgcctaacaattttgttcaaatgttacaaaatataattagtaacatttttcttgattta 34374848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 48464118 - 48464055
Alignment:
Q  21 acctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||||||||||||||| || ||||||||||||||||||||||||| |||||||||| |||||    
T  48464118 acctaacaattgttcaaatgttactaaatttaattagtaacatttttatttatttagtaacaat 48464055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 24559015 - 24559074
Alignment:
Q  19 ttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    |||||||||||| ||||||| || |||||||||||||||||||||||||||| |||||||    
T  24559015 ttacctaacaatcgttcaaatgttactaaatttaattagtaacatttttcttgatttagt 24559074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 4904158 - 4904225
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||||||||||||| |||| || |||||||||||| ||||||||||||| | ||||||| |||||    
T  4904158 ctttacctaacaattgtacaaatgttactaaatttaatcagtaacatttttcatgatttagtaacaat 4904225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 43600349 - 43600282
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||||||||||||||||||   |  ||||||||||||||||||||||||||| ||||||| |||||    
T  43600349 ctttacctaacaattgttcaagttttgctaaatttaattagtaacatttttcttgatttagttacaat 43600282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 47066052 - 47066119
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||||||||||||||||   || |||||||||||||| ||||||||||||| ||||||| |||||    
T  47066052 ctttacctaacaattgttcaggtgttactaaatttaattactaacatttttcttgatttagttacaat 47066119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 4881085 - 4881154
Alignment:
Q  15 gactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||||||||||||| | ||||  | |||||||||||| ||||||||||||||| ||||||| |||||    
T  4881085 gactttacctaacaattatacaaatattactaaatttaatcagtaacatttttcttgatttagtaacaat 4881154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 1684968 - 1685037
Alignment:
Q  15 gactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||| ||||||||||||| |  ||  | ||||||||||||||||||||||||| ||||||| |||||    
T  1684968 gactttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttcttgatttagttacaat 1685037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 21539295 - 21539355
Alignment:
Q  23 ctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaa 83  Q
    |||||||||||| ||| || |||||||||||| ||||||||||| ||| ||||||| ||||    
T  21539295 ctaacaattgtttaaatgttactaaatttaatcagtaacattttccttgatttagttacaa 21539355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 53300433 - 53300374
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttattta 76  Q
    |||||||||||||||||| |   || |||||||||||||| ||||||||||||| |||||    
T  53300433 ctttacctaacaattgtttaggtgttactaaatttaattactaacatttttcttgattta 53300374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 1152097 - 1152059
Alignment:
Q  46 aaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  1152097 aaatttaattagtaacatttttcttaatttagttacaat 1152059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 11017541 - 11017478
Alignment:
Q  15 gactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    |||||||||||||||||| ||||| || |||||||||||||||||||| |||||||||||||||    
T  11017541 gactttacctaacaattggtcaaatgttactaaatttaattagtaacaattttctttatttagt 11017478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 41573474 - 41573414
Alignment:
Q  18 tttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    ||||||||||||||||| ||  || |||||||||||||||||||||||||||| |||||||    
T  41573474 tttacctaacaattgtttaactgttactaaatttaattagtaacatttttcttgatttagt 41573414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 30267085 - 30267018
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||||||||||||||||   || |||||||||||||| ||||||||||||| ||||||| |||||    
T  30267085 ctttacctaacaattgttcaggtgttactaaatttaattactaacatttttcttgatttagttacaat 30267018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 31342734 - 31342801
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||| |||||||||||||||  ||  ||||||||||||||||||||||||||| ||||||| |||||    
T  31342734 ctttatctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaat 31342801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 7718269 - 7718200
Alignment:
Q  15 gactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||| ||||||||||||||   || |||||||||||||||||| ||||||||| ||||||| |||||    
T  7718269 gactttatctaacaattgttcatgtgttactaaatttaattagtaatatttttcttgatttagttacaat 7718200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 24479234 - 24479173
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    |||||||||| ||||||||||| || |||||||||||||||||||| || |||| |||||||    
T  24479234 ctttacctaagaattgttcaaatgttactaaatttaattagtaacagttatcttgatttagt 24479173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 15513749 - 15513690
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttattta 76  Q
    |||||||||||||||||||||  || || |||||||| |||||||||||||||| |||||    
T  15513749 ctttacctaacaattgttcaagtgttacaaaatttaactagtaacatttttcttgattta 15513690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 40016673 - 40016614
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttattta 76  Q
    ||||||||||||||| |||||| || |||||||||||| ||||||||||| ||| |||||    
T  40016673 ctttacctaacaattattcaaatgttactaaatttaatcagtaacattttacttgattta 40016614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 7702511 - 7702450
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    ||||||||||||||||| |||| || ||||| |||||||| |||||||||| || |||||||    
T  7702511 ctttacctaacaattgtacaaatgttactaattttaattaataacattttttttaatttagt 7702450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 22966607 - 22966558
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttt 66  Q
    |||||||||||||||||| ||| |||||||||||| |||||||| |||||    
T  22966607 ctttacctaacaattgtttaaatgtaactaaatttcattagtaatatttt 22966558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 44921039 - 44920973
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||||||||||||||| |   || ||||||||||||||||||||||||| || ||||||| |||||    
T  44921039 ctttacctaacaattgtttaggtgttactaaatttaattagtaacattttt-ttgatttagttacaat 44920973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 12190034 - 12189973
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    |||||||||||||||||||||| || |||||||||||||||||| ||||||||| |||||||    
T  12190034 ctttacctaacaattgttcaaatgttactaaatttaattagtaatatttttcttgatttagt 12189973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 28636987 - 28636918
Alignment:
Q  15 gactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||||||||||||| |||||| || |||||||| ||||||||||||||||||| ||||||| |||||    
T  28636987 gactttacctaacaattattcaaatgttactaaattgaattagtaacatttttcttgatttagttacaat 28636918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 3399703 - 3399643
Alignment:
Q  18 tttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||| | |||||||    
T  3399703 tttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcatgatttagt 3399643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 897535 - 897470
Alignment:
Q  19 ttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||||||||||||||||  || ||||||||||||||| |||||||||||| ||||||| |||||    
T  897535 ttacctaacaattgttcaattgttactaaatttaattaggaacatttttcttcatttagtaacaat 897470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 5911682 - 5911743
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    |||||||||||||||||||||  || |||||||||||| ||||||||||||||| |||||||    
T  5911682 ctttacctaacaattgttcaagtgttactaaatttaatcagtaacatttttcttgatttagt 5911743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 16222860 - 16222793
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||||||||||| |||||  || ||||||||| |||||||||||||||||| ||||||| |||||    
T  16222860 ctttacctaacaattattcaagtgttactaaattttattagtaacatttttcttgatttagttacaat 16222793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 15214410 - 15214348
Alignment:
Q  16 actttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    |||||||| ||||||||||||||  | |||||||||||||||||| ||||||||| |||||||    
T  15214410 actttacccaacaattgttcaaatattactaaatttaattagtaaaatttttcttgatttagt 15214348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 1844033 - 1843981
Alignment:
Q  18 tttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctt 70  Q
    ||||||||||||||||||||| || |||||||| ||| |||||||||||||||    
T  1844033 tttacctaacaattgttcaaatgttactaaattcaatcagtaacatttttctt 1843981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 15204675 - 15204615
Alignment:
Q  18 tttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    ||||||||||||||||||||  || |||||||||| |||| |||||||||||| |||||||    
T  15204675 tttacctaacaattgttcaagtgttactaaatttagttagcaacatttttcttgatttagt 15204615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 13208693 - 13208635
Alignment:
Q  18 tttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttattta 76  Q
    ||||||||||||| ||||||  |  |||||||||||||||||||||||||||| |||||    
T  13208693 tttacctaacaatggttcaagtggtactaaatttaattagtaacatttttcttaattta 13208635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 39368658 - 39368719
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    |||| ||||||||||||  ||| || ||||| |||||||||||||||||||||| |||||||    
T  39368658 ctttgcctaacaattgtataaatgtgactaattttaattagtaacatttttcttgatttagt 39368719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 51758835 - 51758768
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||||||| |||||||| |  ||  ||||||||||||| ||||||||||||| ||||||| |||||    
T  51758835 ctttacctaataattgttcgagtgttgctaaatttaattactaacatttttcttgatttagttacaat 51758768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 37097371 - 37097425
Alignment:
Q  30 ttgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||||| || ||||||||| || ||||||||||||||| ||||||| |||||    
T  37097371 ttgttcaaatgttactaaattttatcagtaacatttttcttgatttagttacaat 37097425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 6781 - 6714
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||||||||||||||||||  ||  ||||||||||||||||||||||||||| ||||||| |||||    
T  6781 ctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagttacaat 6714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 4685421 - 4685488
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||||||||||||||||||  ||  ||||||||||||| ||||||||||||| ||||||| |||||    
T  4685421 ctttacctaacaattgttcaagtgttgctaaatttaattactaacatttttcttgatttagttacaat 4685488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 26224996 - 26225063
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||||||| ||||||||||  || ||||||||||||||||| |||||||||| ||||||| |||||    
T  26224996 ctttacctaataattgttcaagtgttactaaatttaattagtatcatttttcttgatttagttacaat 26225063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 26608557 - 26608615
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttattt 75  Q
    ||||| |||||||||||||||| || |||||||||||| ||||||||||||||| ||||    
T  26608557 ctttatctaacaattgttcaaatgttactaaatttaatcagtaacatttttcttgattt 26608615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 9242500 - 9242569
Alignment:
Q  15 gactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||| |||||||||||||||  || || ||||||||||||||||| ||||||| ||||||| |||||    
T  9242500 gactttatctaacaattgttcaagtgttacaaaatttaattagtaacaattttcttgatttagttacaat 9242569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 26205433 - 26205494
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    ||||||||| ||||| |||||  || |||||||||||||||||||||||||||| |||||||    
T  26205433 ctttacctaccaatttttcaagtgttactaaatttaattagtaacatttttcttgatttagt 26205494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 30089817 - 30089756
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagt 78  Q
    |||| ||||||||||||||||| || ||||||| |||| ||||||||||||||| |||||||    
T  30089817 cttttcctaacaattgttcaaatgttactaaatataatcagtaacatttttcttgatttagt 30089756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 20277378 - 20277445
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||||||||||||||||| ||| || |||||||||||||| ||| |||||| || ||||||| |||||    
T  20277378 ctttacctaacaattgtttaaatgttactaaatttaattaataatattttttttgatttagttacaat 20277445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 26619130 - 26619188
Alignment:
Q  26 acaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||||||||| || | |||||||||| ||||||||||||||| ||||||| |||||    
T  26619130 acaattgttcaaatgttaataaatttaatcagtaacatttttcttgatttagtaacaat 26619188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 26621110 - 26621176
Alignment:
Q  18 tttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    |||| |||||||||||| ||| ||  ||||||||||| ||||||||||||||| ||||||| |||||    
T  26621110 tttatctaacaattgtttaaatgttgctaaatttaatcagtaacatttttcttaatttagtaacaat 26621176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 10022206 - 10022139
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||||||||||||||||   || |||||| ||||||||||||||||||  | ||||||| |||||    
T  10022206 ctttacctaacaattgttcatgtgttactaaacttaattagtaacattttttctgatttagttacaat 10022139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 16086569 - 16086519
Alignment:
Q  17 ctttacctaacaattgttcaaaggtaactaaatttaattagtaacattttt 67  Q
    ||||||||||||||| |||||| || | |||||||||||||||||| ||||    
T  16086569 ctttacctaacaattattcaaatgttattaaatttaattagtaacagtttt 16086519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 16170352 - 16170303
Alignment:
Q  18 tttacctaacaattgttcaaaggtaactaaatttaattagtaacattttt 67  Q
    ||||||||||||||||| ||  || |||||||||||||||||||| ||||    
T  16170352 tttacctaacaattgtttaagtgttactaaatttaattagtaacactttt 16170303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 763 - 832
Alignment:
Q  15 gactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||| ||||||||||||| |  ||  | ||||||||||||||||| ||||||| ||||||| |||||    
T  763 gactttatctaacaattgttcgagtgttgcaaaatttaattagtaacaattttcttgatttagttacaat 832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 40714 - 40783
Alignment:
Q  15 gactttacctaacaattgttcaaaggtaactaaatttaattagtaacatttttctttatttagtcacaat 84  Q
    ||||||| ||||||||||||| |  ||  | ||||||||||||||||| ||||||| ||||||| |||||    
T  40714 gactttatctaacaattgttcgagtgttgcaaaatttaattagtaacaattttcttgatttagttacaat 40783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University