View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_90 (Length: 250)
Name: NF11980_low_90
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_90 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 2919522 - 2919283
Alignment:
| Q |
11 |
aggatattgaccaacataaccatgataaggcttcttagacacattgagtagcttggtttctaaagggagatcaaagagctcttgtagtgaagcaaatatg |
110 |
Q |
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| T |
2919522 |
aggatattgaccaacataaccatgataaggcttcttagacacattgagtagcttggtttctaaagggagatcaaagagctcttgtagtgaagcaaatatg |
2919423 |
T |
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| Q |
111 |
gctttgcgaaggtctaaaggaactttatcaaaaactgcttcaaagcaaccatactctactaatgccttatagacttgggacttcactaactcccaattag |
210 |
Q |
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| T |
2919422 |
gctttgcgaaggtctaaaggaactttatcaaaaactgcttcaaagcaaccatactctactaatgccttatagacttgggacttcactaactcccaattag |
2919323 |
T |
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| Q |
211 |
gactcttggcttccaagttgaggttattgaagtcaattat |
250 |
Q |
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| T |
2919322 |
gactcttggcttccaagttgaggttattgaagtcaattat |
2919283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 2934312 - 2934074
Alignment:
| Q |
11 |
aggatattgaccaacataaccatgataaggcttcttagacacattgagtagcttggtttctaaagggagatcaaagagctcttgtagtgaagcaaatatg |
110 |
Q |
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|||||||||||||| ||| |||| ||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| || ||||| ||||||| |
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| T |
2934312 |
aggatattgaccaatatagccatcataaggcttattagacacattgagtagcttagtctctaaagggagatcaaagagctcttctattgaagtaaatatg |
2934213 |
T |
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| Q |
111 |
gctttgcgaaggtctaaaggaactttatcaaaaactgcttcaaagcaaccatactctactaatgccttatagacttgggacttcactaactcccaattag |
210 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2934212 |
gctttgcgaaggtctaaaggaactttatcaaaaattgcttcaaagcaaccatactctactaatgccttatagacttgggacttcactaactcccaattgg |
2934113 |
T |
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| Q |
211 |
gactcttggcttccaagttgaggttattgaagtcaatta |
249 |
Q |
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| T |
2934112 |
gatttttggcttcaaagttgaggttattgaagtcaatta |
2934074 |
T |
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