View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11980_low_91 (Length: 250)

Name: NF11980_low_91
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11980_low_91
NF11980_low_91
[»] chr3 (8 HSPs)
chr3 (1-242)||(32417074-32417303)
chr3 (63-154)||(1613912-1614001)
chr3 (58-162)||(29359213-29359314)
chr3 (69-138)||(4525197-4525265)
chr3 (59-162)||(45953912-45954013)
chr3 (59-107)||(11194786-11194834)
chr3 (58-138)||(34785090-34785169)
chr3 (64-104)||(45954105-45954145)
[»] chr1 (8 HSPs)
chr1 (58-161)||(46510624-46510726)
chr1 (65-138)||(23175834-23175906)
chr1 (58-167)||(28215941-28216045)
chr1 (59-161)||(15608861-15608961)
chr1 (69-163)||(43741118-43741210)
chr1 (58-138)||(28750073-28750152)
chr1 (58-157)||(31730522-31730619)
chr1 (69-163)||(2730384-2730476)
[»] chr8 (13 HSPs)
chr8 (58-162)||(28237285-28237387)
chr8 (63-141)||(33744393-33744470)
chr8 (65-161)||(35065511-35065605)
chr8 (58-140)||(10167689-10167770)
chr8 (58-140)||(10675544-10675625)
chr8 (69-107)||(33970650-33970688)
chr8 (58-167)||(17075310-17075417)
chr8 (58-167)||(17572853-17572960)
chr8 (59-136)||(32222677-32222753)
chr8 (63-162)||(290552-290647)
chr8 (59-167)||(4718164-4718270)
chr8 (65-163)||(10579027-10579123)
chr8 (64-104)||(33744259-33744299)
[»] chr6 (15 HSPs)
chr6 (58-162)||(31842455-31842557)
chr6 (58-159)||(4058859-4058958)
chr6 (64-138)||(10117895-10117968)
chr6 (59-159)||(7466452-7466551)
chr6 (59-166)||(29681594-29681699)
chr6 (58-104)||(6153799-6153845)
chr6 (58-160)||(6366625-6366725)
chr6 (58-140)||(9242396-9242477)
chr6 (64-162)||(34556551-34556646)
chr6 (64-101)||(13685536-13685573)
chr6 (59-104)||(32132033-32132078)
chr6 (64-140)||(5385471-5385546)
chr6 (64-104)||(7466384-7466424)
chr6 (65-161)||(15837589-15837684)
chr6 (59-107)||(32462170-32462218)
[»] chr4 (12 HSPs)
chr4 (64-164)||(26629429-26629527)
chr4 (59-161)||(33181509-33181609)
chr4 (59-160)||(33230382-33230481)
chr4 (59-164)||(2717296-2717399)
chr4 (59-167)||(8459529-8459635)
chr4 (58-162)||(48148762-48148864)
chr4 (65-161)||(54682920-54683014)
chr4 (58-140)||(23256976-23257057)
chr4 (58-140)||(27704688-27704769)
chr4 (69-159)||(37133412-37133500)
chr4 (64-104)||(32319550-32319590)
chr4 (65-161)||(44258698-44258792)
[»] chr7 (10 HSPs)
chr7 (59-158)||(43359523-43359620)
chr7 (58-159)||(40934443-40934542)
chr7 (59-163)||(40081845-40081947)
chr7 (58-107)||(8238685-8238734)
chr7 (64-161)||(41506505-41506600)
chr7 (64-162)||(29368836-29368931)
chr7 (64-161)||(25513550-25513645)
chr7 (58-167)||(37220349-37220456)
chr7 (58-99)||(38444464-38444505)
chr7 (58-107)||(47764610-47764659)
[»] chr5 (5 HSPs)
chr5 (69-138)||(3308611-3308679)
chr5 (59-161)||(34578300-34578399)
chr5 (58-158)||(10737796-10737894)
chr5 (59-107)||(28770625-28770673)
chr5 (64-104)||(36486767-36486807)
[»] scaffold0223 (1 HSPs)
scaffold0223 (64-140)||(28126-28201)
[»] chr2 (9 HSPs)
chr2 (59-163)||(38556245-38556347)
chr2 (58-140)||(11723571-11723653)
chr2 (65-104)||(39134521-39134560)
chr2 (64-162)||(6334105-6334201)
chr2 (91-161)||(43927758-43927826)
chr2 (69-174)||(12262721-12262824)
chr2 (64-104)||(8846919-8846959)
chr2 (65-101)||(16101278-16101314)
chr2 (58-158)||(25903573-25903671)
[»] scaffold0045 (1 HSPs)
scaffold0045 (64-104)||(22162-22202)


Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 32417074 - 32417303
Alignment:
Q  1 atggtgcgatttataattaataatgctgatgaannnnnnnnatagggactnnnnnnnttgattgaaaattttacagggactaaaatgtgcgattttattt 100  Q
    |||||||||||||||||||||||||||||||||        |||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  32417074 atggtgcgatttataattaataatgctgatgaattttttttatagggactaaaaaaattgattgaaaattttacagggactaaaatgtgcgattttattt 32417173  T
Q  101 tataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccctataattgatttatatagaataattacctcatgcataaac 200  Q
    ||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||           ||||||||||||||||    
T  32417174 tataagggaatcaaaatgaaattctaaatatttatagggatcat-ttacttaattaaccctataattgattta-----------tacctcatgcataaac 32417261  T
Q  201 acttatatataagcatttatactataagcacttacctatgct 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  32417262 acttatatataagcatttatactataagcacttacctatgct 32417303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 1613912 - 1614001
Alignment:
Q  63 tgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaat 154  Q
    ||||||||||||||| ||||||| |||||||||||||||  |||||| | ||||| ||||||||| ||||||||||||| || |||||||||    
T  1613912 tgaaaattttacaggtactaaaaagtgcgattttatttt-gaagggactaaaaataaaattctaaatatttatagggatcat-ttacttaat 1614001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 162
Target Start/End: Original strand, 29359213 - 29359314
Alignment:
Q  58 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 157  Q
    ||||| |||||||||| ||||||||||| ||| ||||||||||| |||||  || ||||| ||||||| | |||||||||||   || ||||||||||||    
T  29359213 ttgatggaaaattttatagggactaaaaagtgtgattttattttgtaagg--attaaaataaaattctgaatatttatagggtccat-ttacttaattaa 29359309  T
Q  158 cccta 162  Q
    |||||    
T  29359310 cccta 29359314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 4525197 - 4525265
Alignment:
Q  69 ttttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagg 138  Q
    ||||||| ||||||||| ||||||||||||||| ||| ||| | ||||||||||||||  ||||||||||    
T  4525197 ttttacaaggactaaaaagtgcgattttattttgtaa-ggactaaaaatgaaattctagatatttatagg 4525265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 162
Target Start/End: Complemental strand, 45954013 - 45953912
Alignment:
Q  59 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 158  Q
    |||| |||||||||| | ||||||||| ||| ||||||||||||| ||||| | ||||  ||||||| | |||||| |||||  || |||||||||||||    
T  45954013 tgatggaaaattttataaggactaaaaagtgtgattttattttat-agggactaaaaacaaaattctgaatatttacagggaccat-ttacttaattaac 45953916  T
Q  159 ccta 162  Q
    ||||    
T  45953915 ccta 45953912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 11194786 - 11194834
Alignment:
Q  59 tgattgaaaattttacagggactaaaatgtgcgattttattttataagg 107  Q
    |||| |||||||||| ||||||||||| ||| ||||||||||| |||||    
T  11194786 tgatggaaaattttatagggactaaaaagtgtgattttattttgtaagg 11194834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 138
Target Start/End: Original strand, 34785090 - 34785169
Alignment:
Q  58 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagg 138  Q
    ||||| |||||||||| ||||||||||| ||| ||||||||||| | ||||| | ||||  ||||||| | ||||||||||    
T  34785090 ttgatggaaaattttatagggactaaaaagtgtgattttattttgt-agggactaaaaacaaaattctgaatatttatagg 34785169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 45954105 - 45954145
Alignment:
Q  64 gaaaattttacagggactaaaatgtgcgattttattttata 104  Q
    |||||||| ||||||||||||| ||| ||||||||||||||    
T  45954105 gaaaatttcacagggactaaaaagtgtgattttattttata 45954145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 46510624 - 46510726
Alignment:
Q  58 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 157  Q
    ||||| |||||||||||||||||||||| |||||||||||||||   ||||| | ||||  ||||||| | ||||||||||||  || ||||||||||||    
T  46510624 ttgatggaaaattttacagggactaaaaagtgcgattttatttttgtagggactaaaaacaaaattctgaatatttatagggaccat-ttacttaattaa 46510722  T
Q  158 ccct 161  Q
    ||||    
T  46510723 ccct 46510726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 23175834 - 23175906
Alignment:
Q  65 aaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagg 138  Q
    ||||||||||||||||||||| || |||||||||||||| ||||| | ||||| ||||||||| |||| |||||    
T  23175834 aaaattttacagggactaaaaagtacgattttattttat-agggactaaaaataaaattctaaatattaatagg 23175906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 167
Target Start/End: Original strand, 28215941 - 28216045
Alignment:
Q  58 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 157  Q
    ||||| |||||||||| || |||||||| ||| || |||||||| || |||| | ||||   |||||||| ||||||||||||| || ||||||||||||    
T  28215941 ttgatggaaaattttatagagactaaaaagtgtgactttattttgta-gggactaaaaa---aattctaaatatttatagggattat-ttacttaattaa 28216035  T
Q  158 ccctataatt 167  Q
    ||||||||||    
T  28216036 ccctataatt 28216045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 161
Target Start/End: Original strand, 15608861 - 15608961
Alignment:
Q  59 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 158  Q
    |||| |||||||||| ||||||||||| ||| ||||||||||| | ||||| | ||||| ||||||| | |||||| |||||  || |||||||||||||    
T  15608861 tgatagaaaattttatagggactaaaaagtgtgattttattttgt-agggactaaaaataaaattctgaatatttacagggaccat-ttacttaattaac 15608958  T
Q  159 cct 161  Q
    |||    
T  15608959 cct 15608961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 163
Target Start/End: Complemental strand, 43741210 - 43741118
Alignment:
Q  69 ttttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccctat 163  Q
    ||||||||||||||||| ||| |||||||||||||||   ||| ||||| ||||||| | |||||||| |||  || ||||||||||||||||||    
T  43741210 ttttacagggactaaaaagtgtgattttattttataa-ataataaaaataaaattctgaatatttataaggaccat-ttacttaattaaccctat 43741118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 28750152 - 28750073
Alignment:
Q  58 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagg 138  Q
    ||||| |||||||||| ||||||||||| ||| ||||||||||| ||| ||| | ||||  ||||||| ||||||||||||    
T  28750152 ttgatggaaaattttatagggactaaaaagtgtgattttattttgtaa-ggattaaaaacaaaattctgattatttatagg 28750073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 157
Target Start/End: Complemental strand, 31730619 - 31730522
Alignment:
Q  58 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 157  Q
    ||||| |||||||||| |||||||||||  || ||||||||||| | ||||| | ||||  ||||||| | ||||||||||||| || ||||||||||||    
T  31730619 ttgatggaaaattttatagggactaaaaattgtgattttattttgt-agggactaaaaacaaaattctgaatatttatagggatcat-ttacttaattaa 31730522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 2730384 - 2730476
Alignment:
Q  69 ttttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccctat 163  Q
    ||||| ||| ||||||| ||| ||||||||||| ||| ||| | ||||| ||||||| | |||||||| |||| || ||||||||||||||||||    
T  2730384 ttttataggaactaaaaagtgtgattttattttgtaa-ggattaaaaataaaattctgaatatttataaggatgat-ttacttaattaaccctat 2730476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 162
Target Start/End: Complemental strand, 28237387 - 28237285
Alignment:
Q  58 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 157  Q
    ||||| |||||||||| ||||||||||| ||| ||||||||||| | ||||| | ||||  ||||||| | ||||||||||||| || ||||||||||||    
T  28237387 ttgatggaaaattttatagggactaaaaagtgtgattttattttgt-agggactaaaaacaaaattctgaatatttatagggatcat-ttacttaattaa 28237290  T
Q  158 cccta 162  Q
    |||||    
T  28237289 cccta 28237285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 141
Target Start/End: Original strand, 33744393 - 33744470
Alignment:
Q  63 tgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggat 141  Q
    ||||||||||| ||||||||||| ||| ||||||||||| | ||||| | ||||| ||||||| | |||||||||||||    
T  33744393 tgaaaattttatagggactaaaaagtgtgattttattttgt-agggactaaaaataaaattctgaatatttatagggat 33744470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 161
Target Start/End: Complemental strand, 35065605 - 35065511
Alignment:
Q  65 aaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccct 161  Q
    ||||||||| ||||||||||| ||| ||||||||||| | ||||| | ||||  ||||||| | ||||||||||||  || ||||||||||||||||    
T  35065605 aaaattttatagggactaaaaagtgtgattttattttgt-agggactaaaaacaaaattctgaatatttatagggactat-ttacttaattaaccct 35065511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 10167689 - 10167770
Alignment:
Q  58 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttataggga 140  Q
    ||||| |||||||||| | ||||||||| ||| ||||||||||| | ||||| | ||||  ||||||||| ||||||||||||    
T  10167689 ttgatggaaaattttataaggactaaaaagtgtgattttatttt-ttagggactaaaaacaaaattctaaatatttataggga 10167770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 10675544 - 10675625
Alignment:
Q  58 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttataggga 140  Q
    ||||| |||||||||| ||| ||||||| ||| ||||||||||| ||| ||| | ||||| ||||||| | ||||||||||||    
T  10675544 ttgatggaaaattttataggaactaaaaagtgtgattttattttgtaa-ggactaaaaataaaattctgaatatttataggga 10675625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 33970688 - 33970650
Alignment:
Q  69 ttttacagggactaaaatgtgcgattttattttataagg 107  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  33970688 ttttacaaggactaaaaagtgcgattttattttataagg 33970650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 167
Target Start/End: Complemental strand, 17075417 - 17075310
Alignment:
Q  58 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 157  Q
    ||||| ||||||||||||  || ||||| ||| ||||||||||| | ||||| | ||||| ||||| | | ||||||||| ||| || ||||||||||||    
T  17075417 ttgatagaaaattttacaaagaataaaaggtgtgattttattttgt-agggactaaaaataaaattttgaatatttatagagatcat-ttacttaattaa 17075320  T
Q  158 ccctataatt 167  Q
    |||| |||||    
T  17075319 ccctttaatt 17075310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 167
Target Start/End: Original strand, 17572853 - 17572960
Alignment:
Q  58 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 157  Q
    ||||| ||||||||||||  || ||||| ||| ||||||||||| | ||||| | ||||| ||||| | | ||||||||| ||| || ||||||||||||    
T  17572853 ttgatagaaaattttacaaagaataaaaggtgtgattttattttgt-agggactaaaaataaaattttgaatatttatagagatcat-ttacttaattaa 17572950  T
Q  158 ccctataatt 167  Q
    |||| |||||    
T  17572951 ccctttaatt 17572960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 32222753 - 32222677
Alignment:
Q  59 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttata 136  Q
    |||| |||||||||||| |||||||||  |||||||||||||||  || |||| |||| |||||||| | ||||||||    
T  32222753 tgatggaaaattttacaaggactaaaaaatgcgattttatttta-cagagaataaaaacgaaattctgaatatttata 32222677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 162
Target Start/End: Original strand, 290552 - 290647
Alignment:
Q  63 tgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaacccta 162  Q
    |||||| |||| ||||||||||| ||| ||||||||||||| |||||  |||||  ||||| | | ||||||||||||  || |||||||||||||||||    
T  290552 tgaaaaatttatagggactaaaaagtgtgattttattttat-aggga--caaaaaaaaattatgaatatttatagggaccat-ttacttaattaacccta 290647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 167
Target Start/End: Original strand, 4718164 - 4718270
Alignment:
Q  59 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 158  Q
    |||| |||||||||| ||| ||||||| ||| ||||||||||| | ||||| | ||||  ||||| | | ||||||||||||  || |||||||||||||    
T  4718164 tgatggaaaattttataggaactaaaaagtgtgattttattttgt-agggactaaaaacaaaattatgaatatttatagggaccat-ttacttaattaac 4718261  T
Q  159 cctataatt 167  Q
    |||| ||||    
T  4718262 cctaaaatt 4718270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 10579123 - 10579027
Alignment:
Q  65 aaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttataggga-taatattacttaattaaccctat 163  Q
    ||||||||| ||||| ||||| ||| ||||||||||| | ||||| | ||||  ||||||||| |||||||||||| ||| |  ||||||||||||||||    
T  10579123 aaaattttatagggattaaaaagtgtgattttattttgt-agggactaaaaacaaaattctaaatatttatagggactaaaa--acttaattaaccctat 10579027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 33744299 - 33744259
Alignment:
Q  64 gaaaattttacagggactaaaatgtgcgattttattttata 104  Q
    |||||| | ||||||||||||||||| ||||||||||||||    
T  33744299 gaaaatgtcacagggactaaaatgtgtgattttattttata 33744259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 162
Target Start/End: Complemental strand, 31842557 - 31842455
Alignment:
Q  58 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 157  Q
    ||||| |||||||||| ||||||||||| ||||||||||||||| | ||||| | ||||  ||||||||| |||||||| ||| ||| |||||| |||||    
T  31842557 ttgatagaaaattttatagggactaaaaagtgcgattttattttgt-agggactaaaaacaaaattctaaatatttataaggacaat-ttactttattaa 31842460  T
Q  158 cccta 162  Q
    |||||    
T  31842459 cccta 31842455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 159
Target Start/End: Complemental strand, 4058958 - 4058859
Alignment:
Q  58 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 157  Q
    ||||| |||||||||| ||||||||||| ||| ||||||||||| | ||||| | ||||| ||||||||| ||||||||| ||  || ||||||||||||    
T  4058958 ttgatggaaaattttaaagggactaaaaagtgtgattttattttgt-agggactaaaaataaaattctaaatatttatagagaccat-ttacttaattaa 4058861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 10117968 - 10117895
Alignment:
Q  64 gaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagg 138  Q
    |||||||||||| ||||||||| ||||||||||||||||||  ||  | ||||||||||| ||| ||||||||||    
T  10117968 gaaaattttacaaggactaaaaagtgcgattttattttatagaggt-taaaaatgaaattttaaatatttatagg 10117895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 159
Target Start/End: Original strand, 7466452 - 7466551
Alignment:
Q  59 tgattgaaaatttt-acagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 157  Q
    |||||||||||||| | ||||||||||| ||| ||||||||||||||| ||| | ||||  ||||||||| |||||||| |||  || ||||||||||||    
T  7466452 tgattgaaaatttttatagggactaaaaagtgtgattttattttataa-ggactaaaaacaaaattctaaatatttataaggaccat-ttacttaattaa 7466549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 166
Target Start/End: Complemental strand, 29681699 - 29681594
Alignment:
Q  59 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 158  Q
    |||| |||||||||| | ||||||||| |||  |||||||||||| ||||| | ||||  ||||||| | |||||| |||||  || |||||||||||||    
T  29681699 tgatggaaaattttataaggactaaaaagtgtaattttattttat-agggactaaaaacaaaattctgaatatttacagggaccat-ttacttaattaac 29681602  T
Q  159 cctataat 166  Q
    ||||||||    
T  29681601 cctataat 29681594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 6153845 - 6153799
Alignment:
Q  58 ttgattgaaaattttacagggactaaaatgtgcgattttattttata 104  Q
    ||||| |||||||||| | ||||||||| ||||||||||||||||||    
T  6153845 ttgatggaaaattttataaggactaaaaagtgcgattttattttata 6153799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 6366625 - 6366725
Alignment:
Q  58 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 157  Q
    ||||| |||| ||||| || |||||||| ||| ||||||||||| | ||||| | ||||| ||||||| | ||||||||||||  || ||||||||||||    
T  6366625 ttgatggaaatttttatagagactaaaaagtgtgattttattttgt-agggactaaaaataaaattctgaatatttatagggaccat-ttacttaattaa 6366722  T
Q  158 ccc 160  Q
    |||    
T  6366723 ccc 6366725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 9242477 - 9242396
Alignment:
Q  58 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttataggga 140  Q
    ||||| |||||| ||| ||||||||||| ||| ||||||||||| | ||||| | ||||  ||||||||| ||||||||||||    
T  9242477 ttgatggaaaatgttatagggactaaaaagtgtgattttattttgt-agggactaaaaacaaaattctaaatatttataggga 9242396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 162
Target Start/End: Original strand, 34556551 - 34556646
Alignment:
Q  64 gaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaacccta 162  Q
    |||||| | ||||||||||||| ||| ||||||||||| || |||| | ||||| ||||||| | ||||||||||||  || |||||||||||||||||    
T  34556551 gaaaatgtcacagggactaaaa-gtgtgattttattttgta-gggactaaaaataaaattcttaatatttatagggaccat-ttacttaattaacccta 34556646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 13685573 - 13685536
Alignment:
Q  64 gaaaattttacagggactaaaatgtgcgattttatttt 101  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  13685573 gaaaattttacagggactaaaaagtgtgattttatttt 13685536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 32132078 - 32132033
Alignment:
Q  59 tgattgaaaattttacagggactaaaatgtgcgattttattttata 104  Q
    |||| ||||||||||||| |||||||  ||||||||||||||||||    
T  32132078 tgatggaaaattttacagagactaaatagtgcgattttattttata 32132033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 5385471 - 5385546
Alignment:
Q  64 gaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttataggga 140  Q
    |||||||||| | ||||||||| ||| ||||||||||||| ||||| | ||||  ||||||| | ||||||||||||    
T  5385471 gaaaattttataaggactaaaaagtgtgattttattttat-agggattaaaaacaaaattctgaatatttataggga 5385546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 7466424 - 7466384
Alignment:
Q  64 gaaaattttacagggactaaaatgtgcgattttattttata 104  Q
    |||||| ||||||||||||||| ||| ||||||||||||||    
T  7466424 gaaaatgttacagggactaaaaagtgtgattttattttata 7466384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 161
Target Start/End: Original strand, 15837589 - 15837684
Alignment:
Q  65 aaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccct 161  Q
    ||||||||| ||||||||||| ||| |||||||||||   ||||| | ||||  | ||||||| |||||||||||| |   ||||||||||||||||    
T  15837589 aaaattttatagggactaaaaagtgtgattttatttttctagggactaaaaacaacattctaaatatttataggga-aggtttacttaattaaccct 15837684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 32462218 - 32462170
Alignment:
Q  59 tgattgaaaattttacagggactaaaatgtgcgattttattttataagg 107  Q
    |||| ||| |||||| ||||||||||||||| ||||||||||| |||||    
T  32462218 tgatggaacattttatagggactaaaatgtgtgattttattttgtaagg 32462170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 164
Target Start/End: Complemental strand, 26629527 - 26629429
Alignment:
Q  64 gaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccctat 163  Q
    |||||||| ||||||||||||| ||| ||||||||||| | ||||| | ||||||||||| | | ||||||||||||  || ||||||||||||||||||    
T  26629527 gaaaatttcacagggactaaaaagtgtgattttattttgt-agggactaaaaatgaaattttgaatatttatagggaccat-ttacttaattaaccctat 26629430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 161
Target Start/End: Complemental strand, 33181609 - 33181509
Alignment:
Q  59 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 158  Q
    |||| |||||||||| ||||||||||| ||| ||||||||||| | ||||| | || |||||||||| | ||||||||||||| || |||||||||| ||    
T  33181609 tgatggaaaattttatagggactaaaaagtgtgattttatttt-ttagggattaaatatgaaattctgaatatttatagggatcat-ttacttaattgac 33181512  T
Q  159 cct 161  Q
    |||    
T  33181511 cct 33181509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 160
Target Start/End: Original strand, 33230382 - 33230481
Alignment:
Q  59 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 158  Q
    |||| |||||||||| ||||||||||| ||| ||||||||||| | ||||| | || |||||||||| | ||||||||||||| || |||||||||| ||    
T  33230382 tgatggaaaattttatagggactaaaaagtgtgattttatttt-ttagggattaaatatgaaattctgaatatttatagggatcat-ttacttaattgac 33230479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 164
Target Start/End: Original strand, 2717296 - 2717399
Alignment:
Q  59 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 158  Q
    |||| |||||||||| | ||||||||| || |||| |||||||||| || | | ||||||||||| ||| ||||||||||||  || |||||||||||||    
T  2717296 tgatggaaaattttataaggactaaaaagtacgatattattttata-ggaattaaaaatgaaattataaatatttatagggactat-ttacttaattaac 2717393  T
Q  159 cctata 164  Q
    | ||||    
T  2717394 catata 2717399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 167
Target Start/End: Original strand, 8459529 - 8459635
Alignment:
Q  59 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 158  Q
    |||| |||||| ||| ||||||||||| ||| ||||||||||| | ||||| | ||||  ||||||| | ||||||||||||  || |||||||||||||    
T  8459529 tgatggaaaatcttatagggactaaaaagtgtgattttattttgt-agggattaaaaacaaaattctgaatatttatagggaccat-ttacttaattaac 8459626  T
Q  159 cctataatt 167  Q
    |||| ||||    
T  8459627 cctaaaatt 8459635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 162
Target Start/End: Complemental strand, 48148864 - 48148762
Alignment:
Q  58 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 157  Q
    ||||| |||||||||| |||||||||||  || ||||||||||| | ||||| | ||||  ||||| | | |||||||||||| ||| ||||||||||||    
T  48148864 ttgatggaaaattttatagggactaaaaactgtgattttattttgt-agggactaaaaacaaaattatgaatatttatagggacaat-ttacttaattaa 48148767  T
Q  158 cccta 162  Q
    |||||    
T  48148766 cccta 48148762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 161
Target Start/End: Complemental strand, 54683014 - 54682920
Alignment:
Q  65 aaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccct 161  Q
    ||||||||| ||||||||||| |||  ||||||||||||  |||| | ||||  ||||||| | |||||||||||| ||| ||||||||||||||||    
T  54683014 aaaattttatagggactaaaaagtgtaattttattttat-tgggactaaaaactaaattctgaatatttatagggacaat-ttacttaattaaccct 54682920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 23257057 - 23256976
Alignment:
Q  58 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttataggga 140  Q
    ||||| |||||||||| | ||||||||| ||| ||||||||||| | ||||| | ||||  ||||||||| ||||||||||||    
T  23257057 ttgatggaaaattttataaggactaaaaagtgtgattttatttt-ttagggactaaaaacaaaattctaaatatttataggga 23256976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 27704688 - 27704769
Alignment:
Q  58 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttataggga 140  Q
    ||||| |||||||||| | ||||||||| ||| ||||||||||| | ||||| | ||||  ||||||||| ||||||||||||    
T  27704688 ttgatggaaaattttataaggactaaaaagtgtgattttatttt-ttagggactaaaaacaaaattctaaatatttataggga 27704769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 159
Target Start/End: Original strand, 37133412 - 37133500
Alignment:
Q  69 ttttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaacc 159  Q
    ||||| || |||||||| ||| ||||||||||| || |||||| ||||  ||||||||| ||||||||||||  || ||||||||||||||    
T  37133412 ttttatagagactaaaaagtgtgattttattttgta-gggaataaaaacaaaattctaaatatttatagggaccat-ttacttaattaacc 37133500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 32319590 - 32319550
Alignment:
Q  64 gaaaattttacagggactaaaatgtgcgattttattttata 104  Q
    |||||||||| ||||||||||| ||| ||||||||||||||    
T  32319590 gaaaattttatagggactaaaaagtgtgattttattttata 32319550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 161
Target Start/End: Complemental strand, 44258792 - 44258698
Alignment:
Q  65 aaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccct 161  Q
    ||||||||| ||| ||| ||| ||| ||||||||||| || |||| | ||||  ||||||||| ||||||||||||  || ||||||||||||||||    
T  44258792 aaaattttataggcacttaaaagtgtgattttattttgta-gggattaaaaacaaaattctaaatatttatagggaccat-ttacttaattaaccct 44258698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 158
Target Start/End: Complemental strand, 43359620 - 43359523
Alignment:
Q  59 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 158  Q
    |||| ||||||| |||| | ||||||||||||||||||||||| ||| ||| | ||||||||||||||| ||||||||| ||  || |||||||||||||    
T  43359620 tgatggaaaattatacatgaactaaaatgtgcgattttattttgtaa-ggactgaaaatgaaattctaaatatttatagcgaccat-ttacttaattaac 43359523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 159
Target Start/End: Complemental strand, 40934542 - 40934443
Alignment:
Q  58 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 157  Q
    ||||| |||||||||| ||||||||||| ||| ||||||||||||| ||||| | ||||| ||||||| | |||||| |||||  || ||||||||||||    
T  40934542 ttgatggaaaattttatagggactaaaaagtgtgattttattttat-agggactaaaaataaaattctgaatatttacagggaccat-ttacttaattaa 40934445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 163
Target Start/End: Original strand, 40081845 - 40081947
Alignment:
Q  59 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 158  Q
    |||| |||||||||| |||||||||||  || ||||||||||| | ||||| | ||||| ||||||| | ||||||||||||  || |||||||||||||    
T  40081845 tgatggaaaattttatagggactaaaaaatgtgattttattttgt-agggactaaaaataaaattctgaatatttatagggaccat-ttacttaattaac 40081942  T
Q  159 cctat 163  Q
    |||||    
T  40081943 cctat 40081947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 8238734 - 8238685
Alignment:
Q  58 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagg 107  Q
    ||||| |||||||||| ||||||||||| ||| |||||||||||||||||    
T  8238734 ttgatggaaaattttatagggactaaaaagtgtgattttattttataagg 8238685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 161
Target Start/End: Original strand, 41506505 - 41506600
Alignment:
Q  64 gaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccct 161  Q
    ||||||||||  | |||||||| ||| ||||||||||||| ||||| | ||||  ||||||| | ||||||||||||| || ||||||||||||||||    
T  41506505 gaaaattttattgagactaaaaagtgtgattttattttat-agggactaaaaacaaaattctgaatatttatagggatcat-ttacttaattaaccct 41506600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 162
Target Start/End: Complemental strand, 29368931 - 29368836
Alignment:
Q  64 gaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaacccta 162  Q
    |||||||||| || |||||||| |||||||||||||||   ||||| | ||||  ||||| | | |||||||||||| ||| |||||||||||||||||    
T  29368931 gaaaattttatagagactaaaaggtgcgattttattttg--agggactaaaaacaaaattttgaatatttatagggacaat-ttacttaattaacccta 29368836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 161
Target Start/End: Original strand, 25513550 - 25513645
Alignment:
Q  64 gaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccct 161  Q
    |||||| | ||||||||||||| ||| |||||||||||||  |||| | ||||  ||||||| | ||||||||||||  || ||||||||||||||||    
T  25513550 gaaaatgtcacagggactaaaaagtgtgattttattttat-ggggactaaaaacaaaattctgaatatttatagggaccat-ttacttaattaaccct 25513645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 167
Target Start/End: Original strand, 37220349 - 37220456
Alignment:
Q  58 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 157  Q
    ||||| |||||||||| ||||||||||| ||| |||||| |||| | ||||| | ||||  ||||||  | ||||||||||||| | |  ||||||||||    
T  37220349 ttgatggaaaattttatagggactaaaaagtgtgattttcttttgt-agggattaaaaacaaaattcggaatatttatagggatta-aaaacttaattaa 37220446  T
Q  158 ccctataatt 167  Q
    ||||||||||    
T  37220447 ccctataatt 37220456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 38444505 - 38444464
Alignment:
Q  58 ttgattgaaaattttacagggactaaaatgtgcgattttatt 99  Q
    ||||| |||||||||||||||||||||| ||| |||||||||    
T  38444505 ttgatggaaaattttacagggactaaaaagtgtgattttatt 38444464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 47764610 - 47764659
Alignment:
Q  58 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagg 107  Q
    ||||| |||||||||| ||||||||||| ||| ||||||||||| |||||    
T  47764610 ttgatggaaaattttatagggactaaaaagtgtgattttattttgtaagg 47764659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 3308611 - 3308679
Alignment:
Q  69 ttttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagg 138  Q
    ||||||| ||||||||||||||||||||||||| ||| ||| | ||||||||||||| | ||||||||||    
T  3308611 ttttacatggactaaaatgtgcgattttattttctaa-ggactaaaaatgaaattctgaatatttatagg 3308679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 161
Target Start/End: Complemental strand, 34578399 - 34578300
Alignment:
Q  59 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 158  Q
    |||| |||||||||| ||||||||||| ||| ||||||||||||||  || || ||||  ||||||| | |||||||||| |  || |||||||||||||    
T  34578399 tgatggaaaattttatagggactaaaaagtgtgattttattttata--gggattaaaaaaaaattctgaatatttataggaaccat-ttacttaattaac 34578303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 10737796 - 10737894
Alignment:
Q  58 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 157  Q
    ||||| |||||||||  |||||||||||  || ||||||||||||| ||| ||| ||||  |||||||||  |||||||||||  || ||||||||||||    
T  10737796 ttgatggaaaattttgtagggactaaaaaatgtgattttattttat-aggaaataaaaacaaaattctaaaaatttatagggaccat-ttacttaattaa 10737893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 28770673 - 28770625
Alignment:
Q  59 tgattgaaaattttacagggactaaaatgtgcgattttattttataagg 107  Q
    |||| |||||||||| ||||||||||| ||| ||||||||||| |||||    
T  28770673 tgatggaaaattttatagggactaaaaagtgtgattttattttgtaagg 28770625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 36486767 - 36486807
Alignment:
Q  64 gaaaattttacagggactaaaatgtgcgattttattttata 104  Q
    |||||||| ||||||||||||| ||| ||||||||||||||    
T  36486767 gaaaatttcacagggactaaaaagtgtgattttattttata 36486807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 28201 - 28126
Alignment:
Q  64 gaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttataggga 140  Q
    |||||||||||||||||||||| |||| |||||||||| | ||||| | ||||| ||||| ||| ||||||||||||    
T  28201 gaaaattttacagggactaaaaagtgcaattttattttgt-agggactaaaaataaaattttaaatatttataggga 28126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 163
Target Start/End: Original strand, 38556245 - 38556347
Alignment:
Q  59 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 158  Q
    |||| |||||||||| ||||||||||| || |||||||||||| | ||||| | |||   ||||||| | |||||||||||| ||| |||||||||||||    
T  38556245 tgatggaaaattttatagggactaaaaagtacgattttattttgt-agggactaaaatcaaaattctgaatatttatagggacaat-ttacttaattaac 38556342  T
Q  159 cctat 163  Q
    |||||    
T  38556343 cctat 38556347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 11723571 - 11723653
Alignment:
Q  58 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattct-aattatttataggga 140  Q
    ||||| |||||||||||||||||||||| ||| ||||||||||||| ||||| | ||||  ||||||| || ||||||||||||    
T  11723571 ttgatggaaaattttacagggactaaaaagtgtgattttattttat-agggactaaaaacaaaattctgaaatatttataggga 11723653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 39134560 - 39134521
Alignment:
Q  65 aaaattttacagggactaaaatgtgcgattttattttata 104  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  39134560 aaaattttatagggactaaaatgtgtgattttattttata 39134521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 162
Target Start/End: Complemental strand, 6334201 - 6334105
Alignment:
Q  64 gaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaacccta 162  Q
    |||||| ||| ||||||||||| ||| ||||||||||| ||| ||| | ||||| ||||||| | |||||||| |||  || |||||||||||||||||    
T  6334201 gaaaatcttatagggactaaaaagtgtgattttattttgtaa-ggactaaaaataaaattctgaatatttataaggaccat-ttacttaattaacccta 6334105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 161
Target Start/End: Original strand, 43927758 - 43927826
Alignment:
Q  91 gattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccct 161  Q
    |||||||||||||| |||| | ||||| ||||||| | ||||||||||||| || ||||||||||||||||    
T  43927758 gattttattttata-gggactaaaaataaaattctgaatatttatagggatcat-ttacttaattaaccct 43927826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 174
Target Start/End: Complemental strand, 12262824 - 12262721
Alignment:
Q  69 ttttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccctataattg 168  Q
    ||||| ||||||||||| |||  |||||||||| || |||| | ||||  ||||||||| ||||||||||||  || ||||||||||||||||  ||||     
T  12262824 ttttatagggactaaaaagtgttattttattttgta-gggattaaaaacaaaattctaaatatttatagggaccat-ttacttaattaacccttaaatta 12262727  T
Q  169 atttat 174  Q
    ||||||    
T  12262726 atttat 12262721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 8846919 - 8846959
Alignment:
Q  64 gaaaattttacagggactaaaatgtgcgattttattttata 104  Q
    |||||| ||||||||||||||| ||| ||||||||||||||    
T  8846919 gaaaatgttacagggactaaaaagtgtgattttattttata 8846959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 16101278 - 16101314
Alignment:
Q  65 aaaattttacagggactaaaatgtgcgattttatttt 101  Q
    ||||||||||||||||||||  |||||||||||||||    
T  16101278 aaaattttacagggactaaatagtgcgattttatttt 16101314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 25903573 - 25903671
Alignment:
Q  58 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 157  Q
    ||||| |||||||||| ||||| |||||  || ||||||||||||| ||||| | ||||  ||||| ||| ||||||||||||  || ||||||||||||    
T  25903573 ttgatggaaaattttatagggattaaaaaatgtgattttattttat-agggactaaaaacaaaattttaaatatttatagggaccat-ttacttaattaa 25903670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 22162 - 22202
Alignment:
Q  64 gaaaattttacagggactaaaatgtgcgattttattttata 104  Q
    |||||| ||||||||||||||| ||| ||||||||||||||    
T  22162 gaaaatgttacagggactaaaaagtgtgattttattttata 22202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University