View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_low_92 (Length: 250)
Name: NF11980_low_92
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_92 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 51360148 - 51360384
Alignment:
| Q |
1 |
cgatagaatctctttcccgcaacaatgcaaataagtgcagaggcagaacatgagagagatataagaaaacctttgtaccaatcgaagattgtgctaacat |
100 |
Q |
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| T |
51360148 |
cgatagaatctctttccagcaacaatgcaaataagtgcagaggcagaacatgagagagatataagaaaacctttgtaccaatcgaagattgtgctaacat |
51360247 |
T |
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| Q |
101 |
aaactacaaaagtgacacctaagctagcaccaattgtaatactaaacaaaaaccaattgaagaagcttgctagttggagatattcttttggattcatatc |
200 |
Q |
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| T |
51360248 |
aaactacaaaagtgacacctaagctagcaccaattgtaatactaaacaaaaaccaattgaagaagcttgctagttggagatattcttttggattcatatc |
51360347 |
T |
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| Q |
201 |
atcaaattgatctgctcctagagcaggaacacaacct |
237 |
Q |
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| T |
51360348 |
atcaaattgatctgctcctagagcaggaacacaacct |
51360384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 126
Target Start/End: Original strand, 51350796 - 51350919
Alignment:
| Q |
3 |
atagaatctctttcccgcaacaatgcaaataagtgcagaggcagaacatgagagagatataagaaaacctttgtaccaatcgaagattgtgctaacataa |
102 |
Q |
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| T |
51350796 |
atagaatctctttccagaaacaatgcaaattagtgcagcagaagcatataagagagatataagaaaacctttgtaccatttgaattgtgatctaacatga |
51350895 |
T |
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| Q |
103 |
actacaaaagtgacacctaagcta |
126 |
Q |
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| T |
51350896 |
actacaaaggtggcacctaagcta |
51350919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 51350938 - 51351011
Alignment:
| Q |
160 |
aagaagcttgctagttggagatattcttttggattcatatcatcaaattgatctgctcctagagcaggaacaca |
233 |
Q |
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| T |
51350938 |
aagaagctagctagttggagacggtcctttggattcttgtcatcaaattgatcagctcctagagcaggaacaca |
51351011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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