View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11980_low_93 (Length: 250)
Name: NF11980_low_93
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_low_93 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 32063169 - 32062929
Alignment:
| Q |
14 |
tcacactctattatgccacacaaaatcaagacaattctgcttcgaattagaattggcactcagcaaacactttgt----accctactgggttagcttaat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
32063169 |
tcacactctattatgccacacaaaatcaagacaattctgcttcgaattagaactggcactcagcaaacactttgttcctaccctaatgggttagcttaat |
32063070 |
T |
|
| Q |
110 |
ggcactacactaggtatgcaatgcccaaatgtgtacaaggtattctcaagtgaggtctctagatagaaccttgtgaaaaacaaatccacctaaaagcgga |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
32063069 |
ggcactacactaggtatgcaatgcccaaatgtgtacaaggtattctcaagtgaggtctctagatagaaccttgtgaaaaactaatccacctaaaagtgga |
32062970 |
T |
|
| Q |
210 |
tgaattggtacatacctcaaactagttccgaaggaagaaac |
250 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
32062969 |
tgaattggtacaaacctcaaactagttccaaaggaagaaac |
32062929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 4802962 - 4802894
Alignment:
| Q |
20 |
tctattatgccacacaaaatcaagacaattctgcttcgaattagaattggcactcagcaaacactttgt |
88 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
4802962 |
tctattatgccacacaaaatcaacacaattctgcttagaactagaattggcactcagcaaacactttgt |
4802894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University