View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11980_low_98 (Length: 245)

Name: NF11980_low_98
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11980_low_98
NF11980_low_98
[»] chr5 (6 HSPs)
chr5 (70-245)||(19021114-19021289)
chr5 (70-245)||(22639283-22639458)
chr5 (96-238)||(26369153-26369295)
chr5 (91-226)||(22580624-22580759)
chr5 (90-244)||(25982390-25982544)
chr5 (81-244)||(40973483-40973646)
[»] chr8 (8 HSPs)
chr8 (70-241)||(8444465-8444636)
chr8 (71-245)||(24503779-24503953)
chr8 (77-244)||(45540046-45540213)
chr8 (70-235)||(13089998-13090163)
chr8 (70-238)||(4034509-4034677)
chr8 (109-238)||(9932314-9932443)
chr8 (121-238)||(25582799-25582916)
chr8 (109-238)||(13781062-13781190)
[»] chr4 (15 HSPs)
chr4 (70-245)||(42718294-42718469)
chr4 (70-245)||(36651942-36652117)
chr4 (70-245)||(43499021-43499196)
chr4 (70-245)||(7743296-7743471)
chr4 (70-243)||(39059924-39060097)
chr4 (70-244)||(9896708-9896882)
chr4 (70-235)||(37870869-37871034)
chr4 (109-238)||(40850567-40850696)
chr4 (121-238)||(47590673-47590790)
chr4 (109-238)||(56024798-56024927)
chr4 (129-214)||(23106853-23106938)
chr4 (110-238)||(48640488-48640616)
chr4 (90-244)||(50771543-50771697)
chr4 (70-133)||(23108098-23108161)
chr4 (8-50)||(28359229-28359271)
[»] chr2 (9 HSPs)
chr2 (70-245)||(6764144-6764319)
chr2 (71-245)||(12410512-12410686)
chr2 (70-245)||(37647689-37647864)
chr2 (73-245)||(12422574-12422746)
chr2 (70-200)||(27271372-27271502)
chr2 (70-235)||(11031502-11031667)
chr2 (112-238)||(2380839-2380965)
chr2 (187-238)||(3044171-3044222)
chr2 (146-213)||(7901211-7901278)
[»] scaffold0300 (1 HSPs)
scaffold0300 (70-245)||(9301-9476)
[»] chr7 (13 HSPs)
chr7 (70-245)||(9942803-9942978)
chr7 (70-243)||(1031948-1032121)
chr7 (98-235)||(40871525-40871662)
chr7 (70-237)||(17194101-17194267)
chr7 (109-238)||(40858238-40858367)
chr7 (76-244)||(19323948-19324116)
chr7 (76-244)||(32575193-32575361)
chr7 (76-244)||(38141963-38142131)
chr7 (76-244)||(29626637-29626805)
chr7 (76-244)||(15669415-15669583)
chr7 (8-50)||(27324434-27324476)
chr7 (193-238)||(8123965-8124010)
chr7 (76-244)||(29126067-29126233)
[»] chr1 (13 HSPs)
chr1 (70-245)||(4532288-4532463)
chr1 (70-241)||(33936151-33936322)
chr1 (76-237)||(31911767-31911928)
chr1 (70-220)||(19228125-19228274)
chr1 (70-235)||(34549075-34549240)
chr1 (109-238)||(20505398-20505527)
chr1 (171-245)||(51534679-51534753)
chr1 (121-238)||(26676664-26676781)
chr1 (109-238)||(33676714-33676843)
chr1 (131-238)||(28756696-28756803)
chr1 (76-244)||(15759681-15759849)
chr1 (96-241)||(27007602-27007747)
chr1 (109-238)||(46731822-46731951)
[»] chr6 (5 HSPs)
chr6 (74-237)||(24393632-24393795)
chr6 (70-235)||(12912471-12912636)
chr6 (74-238)||(18972828-18972993)
chr6 (121-241)||(6029095-6029215)
chr6 (76-244)||(7093646-7093814)
[»] scaffold0074 (1 HSPs)
scaffold0074 (74-238)||(23515-23680)
[»] scaffold0041 (1 HSPs)
scaffold0041 (98-235)||(94620-94757)
[»] chr3 (4 HSPs)
chr3 (109-238)||(10436649-10436778)
chr3 (109-238)||(20406132-20406261)
chr3 (76-244)||(53459119-53459287)
chr3 (106-241)||(15029831-15029966)
[»] scaffold0432 (1 HSPs)
scaffold0432 (81-244)||(8829-8992)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 70 - 245
Target Start/End: Original strand, 19021114 - 19021289
Alignment:
Q  70 cctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttca 169  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19021114 cctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctggcttgaaagaaatgctcgcatatttca 19021213  T
Q  170 ctaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccga 245  Q
    | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19021214 ccaaaaagaagcttcttttaatcaattgttagataaagttaagctccaatcatactggtggctgaaagcgaaccga 19021289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 70 - 245
Target Start/End: Original strand, 22639283 - 22639458
Alignment:
Q  70 cctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttca 169  Q
    ||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  22639283 cctttagcggcttctctaacagcaaacgctcttctcttaatcttatttggctatcttgtgtgtgggtgatctggcttgaaaggaatgctcgcatatttca 22639382  T
Q  170 ctaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccga 245  Q
    | ||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||    
T  22639383 ccaaaaagaagcttcttttaatcaattgttagataaagttaagctccaatcatattggtggctgaaagtgaaccga 22639458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 96 - 238
Target Start/End: Complemental strand, 26369295 - 26369153
Alignment:
Q  96 cgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaagtttcttttaatcaat 195  Q
    ||||| ||| || ||||||| ||| ||||||||||||||||||| || |||||||| ||||||||  | |||||| ||| ||||| |||  |||||||||    
T  26369295 cgctccacttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaat 26369196  T
Q  196 tgttagataaagttaagctccaatcatactgatggctgaaagc 238  Q
    || |||||||||||||||| ||||| ||||| |||||||||||    
T  26369195 tgctagataaagttaagcttcaatcttactggtggctgaaagc 26369153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 226
Target Start/End: Complemental strand, 22580759 - 22580624
Alignment:
Q  91 gcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaagtttcttttaa 190  Q
    |||| ||||||||| |||||||||| ||||||||||||||| ||||||| || |||||||| |||| |||  | |||||  ||| | ||  ||| |||||    
T  22580759 gcaaccgctcaacttttaatcttatatggctatcttgtgtgcgggtgatttggcttgaaaggaatgttcgggtctttcaacaaatataaacttcgtttaa 22580660  T
Q  191 tcaattgttagataaagttaagctccaatcatactg 226  Q
    ||||||| |||||||||| ||||| ||||| |||||    
T  22580659 tcaattgctagataaagtgaagcttcaatcttactg 22580624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 244
Target Start/End: Complemental strand, 25982544 - 25982390
Alignment:
Q  90 agcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaagtttctttta 189  Q
    ||||| ||||||||| ||||||| || ||||| |||| |||||||||||| ||  | |||||||| || ||  | |||||  ||||||| || || ||      
T  25982544 agcaaccgctcaacttttaatctcatatggctttcttctgtgtgggtgatttggatagaaagaaacgcccgtgtctttcatcaaaaagaggtctcgttcc 25982445  T
Q  190 atcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccg 244  Q
    |||||||  |||||||| |||| || ||||||||||| |||||||||||||||||    
T  25982444 atcaattactagataaaattaaacttcaatcatactggtggctgaaagcgaaccg 25982390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 244
Target Start/End: Complemental strand, 40973646 - 40973483
Alignment:
Q  81 ttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaag 180  Q
    ||||| || ||||| |||||| || ||||||| || ||||| |||||||||||||| || ||  | |||||||| |||||  | |||||  ||||||| |    
T  40973646 ttttccaaaagcaaccgctcagcttttaatctcatatggctttcttgtgtgtgggttatttggatagaaagaaacgctcgggtctttcatcaaaaagagg 40973547  T
Q  181 tttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccg 244  Q
      || ||  |||||||  |||||||| |||| || ||||||||||| |||||||||||||||||    
T  40973546 cctcgttccatcaattactagataaaattaaacttcaatcatactggtggctgaaagcgaaccg 40973483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 70 - 241
Target Start/End: Complemental strand, 8444636 - 8444465
Alignment:
Q  70 cctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttca 169  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8444636 cctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaaggaatgctcgcatatttca 8444537  T
Q  170 ctaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaa 241  Q
    | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8444536 ccaaaaagaagcttcttttaatcaattgttagataaagttaagctccaatcatactggtggctgaaagcgaa 8444465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 24503779 - 24503953
Alignment:
Q  71 ctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcac 170  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||| |||||||||||||    
T  24503779 ctttagctgcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatttgtcttgaaagtaatgttcgcatatttcac 24503878  T
Q  171 taaaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccga 245  Q
     ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  24503879 caaaaagaagcttcttttaatcaattgttagataaagttaagctccaatcatactggtggttgaaagcgaaccga 24503953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 77 - 244
Target Start/End: Original strand, 45540046 - 45540213
Alignment:
Q  77 cggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaa 176  Q
    |||||| ||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||  |||||||| |||||||| | ||||||| |||||    
T  45540046 cggcttctctaacaacaaactctcaactcttaatcttatttgtctatcttgtgtgtgggtgatctagcttgaaaggaatgctcgaacatttcaccaaaaa 45540145  T
Q  177 gaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccg 244  Q
    |||| |||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||    
T  45540146 gaagcttcttttaatcaattgttagataaagttaaacttcaatcatactggtggctgaaagcgaaccg 45540213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 13090163 - 13089998
Alignment:
Q  70 cctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttca 169  Q
    |||||| ||| ||||| |||| ||||| |||| ||||||| |||||||||||||| |||||||||||||| || |||||||| |||| ||| || |||||    
T  13090163 cctttatcggtttttcaaacaacaaacactcagctcttaaccttatttggctatcatgtgtgtgggtgatttggcttgaaaggaatgatcggatctttca 13090064  T
Q  170 ctaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaa 235  Q
    | ||||||||| |||||||||||||||| |||||||||| ||||| ||||| ||||| ||||||||    
T  13090063 ccaaaaagaagcttcttttaatcaattgctagataaagtcaagcttcaatcttactggtggctgaa 13089998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 70 - 238
Target Start/End: Complemental strand, 4034677 - 4034509
Alignment:
Q  70 cctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttca 169  Q
    |||||| ||| ||||| |||| ||||| |||| ||||||| |||||||||||||| |||||||||||||| || |||||||| |||| ||  || |||||    
T  4034677 cctttatcggtttttcaaacaacaaacactcagctcttaaccttatttggctatcatgtgtgtgggtgatttggcttgaaaggaatgatcagatctttca 4034578  T
Q  170 ctaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagc 238  Q
    | ||||||||| |||||||||||||||| | |||||||| ||||| ||||| ||||| |||||||||||    
T  4034577 ccaaaaagaagcttcttttaatcaattgctggataaagtcaagcttcaatcttactggtggctgaaagc 4034509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 109 - 238
Target Start/End: Complemental strand, 9932443 - 9932314
Alignment:
Q  109 atcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaagtttcttttaatcaattgttagataaagt 208  Q
    ||||||| ||| ||||||||||||||||||| || |||||||| ||||||||  | |||||| ||| ||||| |||  ||||||||||| ||||||||||    
T  9932443 atcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 9932344  T
Q  209 taagctccaatcatactgatggctgaaagc 238  Q
    |||||| ||||| ||||| |||||||||||    
T  9932343 taagcttcaatcttactggtggctgaaagc 9932314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 238
Target Start/End: Complemental strand, 25582916 - 25582799
Alignment:
Q  121 tatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatc 220  Q
    ||||||||||||||||||| || |||||||| ||||||||  | |||||| ||| ||||| |||  ||||||||||| |||||||||||||||| |||||    
T  25582916 tatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatc 25582817  T
Q  221 atactgatggctgaaagc 238  Q
     ||||| |||||||||||    
T  25582816 ttactggtggctgaaagc 25582799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 238
Target Start/End: Complemental strand, 13781190 - 13781062
Alignment:
Q  109 atcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaagtttcttttaatcaattgttagataaagt 208  Q
    ||||||| ||| |||||||||||||| |||| || |||||||| ||||||||  | |||||| ||| ||||| |||  ||| | |||||||| |||||||    
T  13781190 atcttatatggttatcttgtgtgtggatgatttggcttgaaaggaatgctcgggtttttcaccaaatagaagcttcgattacttaattgttaaataaagt 13781091  T
Q  209 taagctccaatcatactgatggctgaaagc 238  Q
    |||||| ||||| ||||| |||||||||||    
T  13781090 taagcttcaatcttactg-tggctgaaagc 13781062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 70 - 245
Target Start/End: Original strand, 42718294 - 42718469
Alignment:
Q  70 cctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttca 169  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42718294 cctttagcggcttttctaacaacaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctggcttgaaagaaatgctcgcatatttca 42718393  T
Q  170 ctaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccga 245  Q
    | ||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42718394 ccaaaaagaagcttattttaatcaattgttagataaagttaagctccaatcatactggtggctgaaagcgaaccga 42718469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 70 - 245
Target Start/End: Complemental strand, 36652117 - 36651942
Alignment:
Q  70 cctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttca 169  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  36652117 cctttagcggcttctctaacagcaaacactcaactcttaatcttatttggctatcttgtgtgtgggtgatctggcttgaaagaaatgctcgcatatttca 36652018  T
Q  170 ctaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccga 245  Q
    | ||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  36652017 ccaaaaagaagcttcttttaatcaattgttagataaagttaagctccaatcatattggtggctgaaagcgaaccga 36651942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 70 - 245
Target Start/End: Original strand, 43499021 - 43499196
Alignment:
Q  70 cctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttca 169  Q
    ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  43499021 cctttagcggcttctctaatagcaaacgctcaacacttaatcttatttggctatcttgtgtgtgggtgatctggcgtgaaagaaatgctcgcatatttca 43499120  T
Q  170 ctaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccga 245  Q
    | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43499121 ccaaaaagaagcttcttttaatcaattgttagataaagttaagctccaatcatactggtggctgaaagcgaaccga 43499196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 70 - 245
Target Start/End: Original strand, 7743296 - 7743471
Alignment:
Q  70 cctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttca 169  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||    
T  7743296 cctttaacggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgcgtgtgggtgatctggcttgaaagaaatgctcgcatattcca 7743395  T
Q  170 ctaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccga 245  Q
    | ||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||||||||||||||    
T  7743396 ccaaaaagaagcttcttttaatcaattgttaaataaagttaagcttcaatcatactggtggttgaaagcgaaccga 7743471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 70 - 243
Target Start/End: Complemental strand, 39060097 - 39059924
Alignment:
Q  70 cctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttca 169  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||| ||    
T  39060097 cctttagcggcttttctaacagcaaacgctcagctcttaatcttatttgactatcttgtgtgtgggtgatctgacttgaaaggaatgctcgaatattcca 39059998  T
Q  170 ctaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaacc 243  Q
    | ||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||| || |||||||||||||    
T  39059997 ccaaaaagaagcttcttttaatcaattgttagataaaattaagcttcaatcatactggtgactgaaagcgaacc 39059924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 70 - 244
Target Start/End: Complemental strand, 9896882 - 9896708
Alignment:
Q  70 cctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttca 169  Q
    ||||||| ||||| |||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||    
T  9896882 cctttagtggcttctctaacggcaaacgctaatctcttaatcttatttggctatcttgtgtgtgggtgatctggcttgaaaggaatgctcgaatattcca 9896783  T
Q  170 ctaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccg 244  Q
    | ||||||||| || ||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||    
T  9896782 ccaaaaagaagcttattttaatcaattgttagataaagttaaacttcaatcatactggtggctgaaagcgaaccg 9896708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 37871034 - 37870869
Alignment:
Q  70 cctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttca 169  Q
    |||||| ||| ||||| |||| ||||| |||| ||||||| |||||||||||||| |||||||| ||||| || |||||||| |||| ||| || |||||    
T  37871034 cctttatcggtttttcaaacaacaaacactcagctcttaaccttatttggctatcatgtgtgtgagtgatttggcttgaaaggaatgatcggatctttca 37870935  T
Q  170 ctaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaa 235  Q
    | ||||||||| |||||||||||||||| |||||||||| ||| | ||||| ||||  ||||||||    
T  37870934 ccaaaaagaagcttcttttaatcaattgctagataaagtcaagtttcaatcttactagtggctgaa 37870869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 109 - 238
Target Start/End: Original strand, 40850567 - 40850696
Alignment:
Q  109 atcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaagtttcttttaatcaattgttagataaagt 208  Q
    ||||||| ||| ||||||||||||||||||| || |||||||  |||||||| || |||||| ||| ||||| |||  ||||||||||| ||||||||||    
T  40850567 atcttatatggttatcttgtgtgtgggtgatttggcttgaaatgaatgctcggatttttcaccaaacagaagcttcgattaatcaattgctagataaagt 40850666  T
Q  209 taagctccaatcatactgatggctgaaagc 238  Q
    |||||| ||||| ||||| |||||||||||    
T  40850667 taagcttcaatcttactggtggctgaaagc 40850696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 238
Target Start/End: Complemental strand, 47590790 - 47590673
Alignment:
Q  121 tatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatc 220  Q
    ||||||||||||||||||| || |||||||| ||||||||  | |||||| ||| |||||||||  ||||||||||| |||||||||||||||| |||||    
T  47590790 tatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagtttcgattaatcaattgctagataaagttaagcttcaatc 47590691  T
Q  221 atactgatggctgaaagc 238  Q
     || || |||||||||||    
T  47590690 ttattggtggctgaaagc 47590673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 238
Target Start/End: Original strand, 56024798 - 56024927
Alignment:
Q  109 atcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaagtttcttttaatcaattgttagataaagt 208  Q
    ||||||| ||| |||||||||||||| |||| || |||||||| ||||||||  | |||||| ||| ||||| |||  ||||||||||| ||||||||||    
T  56024798 atcttatatggttatcttgtgtgtggttgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 56024897  T
Q  209 taagctccaatcatactgatggctgaaagc 238  Q
    |||||| ||||| ||||| |||||||||||    
T  56024898 taagcttcaatcttactggtggctgaaagc 56024927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 23106938 - 23106853
Alignment:
Q  129 gtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaagtttcttttaatcaattgttagataaagttaagct 214  Q
    ||||||||||| || |||||||| |||||||| || |||||| ||||||||| |||||||||||||||| |||||||| |||||||    
T  23106938 gtgtgggtgatttggcttgaaaggaatgctcggatctttcaccaaaaagaagcttcttttaatcaattgctagataaaattaagct 23106853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 110 - 238
Target Start/End: Original strand, 48640488 - 48640616
Alignment:
Q  110 tcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaagtttcttttaatcaattgttagataaagtt 209  Q
    |||||| ||| ||||||||||||||||||| || |||||||  ||||||||  | |||||| ||| ||||| |||  |||||||| || |||||||||||    
T  48640488 tcttatatggttatcttgtgtgtgggtgatttggcttgaaatgaatgctcgggtttttcaccaaacagaagcttcgattaatcaactgctagataaagtt 48640587  T
Q  210 aagctccaatcatactgatggctgaaagc 238  Q
    || || ||||| ||||| |||||||||||    
T  48640588 aatcttcaatcttactggtggctgaaagc 48640616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 244
Target Start/End: Original strand, 50771543 - 50771697
Alignment:
Q  90 agcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaagtttctttta 189  Q
    ||||| |||||| || ||||||| || ||||| ||||||||||||||||| || || ||||||||  ||||  | |||||  ||||||| || || || |    
T  50771543 agcaaccgctcagcttttaatctcatatggctttcttgtgtgtgggtgatttggctagaaagaaacactcgagtctttcatcaaaaagaggtctcgttca 50771642  T
Q  190 atcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccg 244  Q
    |||||||  |||||||| |||  || ||||||||||| |||||||||||||||||    
T  50771643 atcaattactagataaaattatacttcaatcatactggtggctgaaagcgaaccg 50771697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 23108161 - 23108098
Alignment:
Q  70 cctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtg 133  Q
    |||||||||| ||||| |||||||||| |||| ||||||| |||||||||||||| ||||||||    
T  23108161 cctttagcggtttttcaaacagcaaacactcagctcttaaccttatttggctatcatgtgtgtg 23108098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 28359229 - 28359271
Alignment:
Q  8 caaaggaattatgtatcaggtggattttgaggtttttgtttta 50  Q
    ||||||||| |||||||||||||||||||||||| ||||||||    
T  28359229 caaaggaatcatgtatcaggtggattttgaggttgttgtttta 28359271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 70 - 245
Target Start/End: Original strand, 6764144 - 6764319
Alignment:
Q  70 cctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttca 169  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6764144 cctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctggcttgaaagaaatgctcgcatatttca 6764243  T
Q  170 ctaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccga 245  Q
    | ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  6764244 ccaaaaagaagcttcttttaatcaattgttagataaagttaagcttcaatcatactggtggctgaaagcgaaccga 6764319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 12410512 - 12410686
Alignment:
Q  71 ctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcac 170  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  12410512 ctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatatggcttgaaagaaatgctcgcatatttcac 12410611  T
Q  171 taaaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccga 245  Q
     ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12410612 caaaaagaagcttcttttaatcaattgttagataaagttaagctccaatcatactggtggctgaaagcgaaccga 12410686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 70 - 245
Target Start/End: Original strand, 37647689 - 37647864
Alignment:
Q  70 cctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttca 169  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||    
T  37647689 cctttagcggcttctctaacagcaaacgctcaactcttaatcttatttggctatcctgtgtgtgggtgatctggcttgaaagaaatgctcgtatatttca 37647788  T
Q  170 ctaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccga 245  Q
    | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37647789 ccaaaaagaagcttcttttaatcaattgttagataaagttaagctccaatcatactggtggctgaaagcgaaccga 37647864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 73 - 245
Target Start/End: Original strand, 12422574 - 12422746
Alignment:
Q  73 ttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcacta 172  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |    
T  12422574 ttagcagcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatatggcttgaaagaaatgctcgcatatttcacca 12422673  T
Q  173 aaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccga 245  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12422674 aaaagaagcttcttttaatcaattgttagataaagttaagctccaatcatactggtggctgaaagcgaaccga 12422746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 70 - 200
Target Start/End: Original strand, 27271372 - 27271502
Alignment:
Q  70 cctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttca 169  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| || ||| ||||||||||||| ||||||||    
T  27271372 cctttagcggcttttctaacagcaaacgctcagctcttaatcttatttgcctaacttgtgtgtgggtgatttggcttaaaagaaatgctcgaatatttca 27271471  T
Q  170 ctaaaaagaagtttcttttaatcaattgtta 200  Q
    | ||||||||| |||||||||||||||||||    
T  27271472 ccaaaaagaagcttcttttaatcaattgtta 27271502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 70 - 235
Target Start/End: Original strand, 11031502 - 11031667
Alignment:
Q  70 cctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttca 169  Q
    |||||||||| ||||| |||| ||||| |||| ||||||| |||||||||||||| |||||||||||||| || |||||||| |||||||| || |||||    
T  11031502 cctttagcggtttttcaaacaacaaacactcagctcttaaccttatttggctatcatgtgtgtgggtgatttgacttgaaaggaatgctcggatctttca 11031601  T
Q  170 ctaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaa 235  Q
    | ||||||||| |||||||||||||||| |||||||||| ||||| ||||| ||||| ||||||||    
T  11031602 ccaaaaagaagcttcttttaatcaattgctagataaagtcaagcttcaatcttactggtggctgaa 11031667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 112 - 238
Target Start/End: Complemental strand, 2380965 - 2380839
Alignment:
Q  112 ttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaagtttcttttaatcaattgttagataaagttaa 211  Q
    |||| ||| ||||||||||||||||||| || |||||||| |||||||  |  |||||| ||| ||||| |||  ||||||||||| |||||||||||||    
T  2380965 ttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcagacttttcaccaaacagaagcttcaattaatcaattgctagataaagttaa 2380866  T
Q  212 gctccaatcatactgatggctgaaagc 238  Q
     || ||||  ||||| |||||||||||    
T  2380865 acttcaattttactggtggctgaaagc 2380839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 3044171 - 3044222
Alignment:
Q  187 ttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagc 238  Q
    ||||||||||| |||||||||||||||| ||||| ||||| |||||||||||    
T  3044171 ttaatcaattgctagataaagttaagcttcaatcttactggtggctgaaagc 3044222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 7901278 - 7901211
Alignment:
Q  146 tgaaagaaatgctcgcatatttcactaaaaagaagtttcttttaatcaattgttagataaagttaagc 213  Q
    |||||| ||||||||  | |||||| ||| ||||| |||  |||||||||||||||||||||||||||    
T  7901278 tgaaaggaatgctcgggtttttcaccaaacagaagcttcaattaatcaattgttagataaagttaagc 7901211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 70 - 245
Target Start/End: Original strand, 9301 - 9476
Alignment:
Q  70 cctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttca 169  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  9301 cctttagcagcttctctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctggcttgaaaggaatgctcgcatatttca 9400  T
Q  170 ctaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccga 245  Q
    | ||||||||| || |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  9401 ccaaaaagaagcttattttaatcaattgttagataaagttaagcttcaatcatactggtggctgaaagcgaaccga 9476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 70 - 245
Target Start/End: Complemental strand, 9942978 - 9942803
Alignment:
Q  70 cctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttca 169  Q
    ||||||||||||| ||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  9942978 cctttagcggcttctctgacagcaaacactcaactcttaatcttatttgactatcttgtgtgtgggtgatctggcttgaaagaaatgcttgcatatttca 9942879  T
Q  170 ctaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccga 245  Q
    | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9942878 ccaaaaagaagcttcttttaatcaattgttagataaagttaagctccaatcatactggtggctgaaagcgaaccga 9942803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 70 - 243
Target Start/End: Original strand, 1031948 - 1032121
Alignment:
Q  70 cctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttca 169  Q
    ||||||||||||| ||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||  |||||||| || ||||| ||||||||    
T  1031948 cctttagcggcttctctaacaacaaacgctcaactctgaatcttatttggctatattgtgtgtgggtgatctagcttgaaaggaacgctcgaatatttca 1032047  T
Q  170 ctaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaacc 243  Q
    | ||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||    
T  1032048 ccaaaaagaagcttcttttaatcaattattagataaagttaagcttcaatcatactggtggctgaaagcgaacc 1032121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 235
Target Start/End: Complemental strand, 40871662 - 40871525
Alignment:
Q  98 ctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaagtttcttttaatcaattg 197  Q
    |||| ||||||| |||||||||||||| | |||||||||||| || |||||||| |||| ||| || |||||| ||||||||| ||||||||||||||||    
T  40871662 ctcagctcttaaccttatttggctatcatttgtgtgggtgatttggcttgaaaggaatgatcggatctttcaccaaaaagaagcttcttttaatcaattg 40871563  T
Q  198 ttagataaagttaagctccaatcatactgatggctgaa 235  Q
     |||||||||| ||||| ||||| ||||| ||||||||    
T  40871562 ctagataaagtcaagcttcaatcttactggtggctgaa 40871525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 70 - 237
Target Start/End: Complemental strand, 17194267 - 17194101
Alignment:
Q  70 cctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttca 169  Q
    |||||||||| ||||||||||| | || || ||||||||| ||||||||| ||||||||||||| ||||| || |||||||| ||||||   || ||| |    
T  17194267 cctttagcggtttttctaacagtagacacttaactcttaaccttatttggttatcttgtgtgtgagtgatttgacttgaaaggaatgcttaaatcttt-a 17194169  T
Q  170 ctaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaag 237  Q
    | || || ||| |||||||||||||||| |||||||||||||||| |||||  |||| ||||||||||    
T  17194168 ccaataaaaagcttcttttaatcaattgctagataaagttaagcttcaatctcactggtggctgaaag 17194101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 109 - 238
Target Start/End: Complemental strand, 40858367 - 40858238
Alignment:
Q  109 atcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaagtttcttttaatcaattgttagataaagt 208  Q
    ||||||| ||| ||||||||||||||||||| || |||||||  ||||||||  | |||||| ||| ||||| |||  ||||||||||| ||||||||||    
T  40858367 atcttatatggttatcttgtgtgtgggtgatttggcttgaaatgaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 40858268  T
Q  209 taagctccaatcatactgatggctgaaagc 238  Q
    |||||| ||||| |||||||||||||||||    
T  40858267 taagcttcaatcttactgatggctgaaagc 40858238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 244
Target Start/End: Original strand, 19323948 - 19324116
Alignment:
Q  76 gcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaa 175  Q
    |||| ||||| || ||||| ||||||||| |||| || || ||||| ||||||||||||||||| ||  | |||||||| |||||  | |||||  ||||    
T  19323948 gcgggttttccaaaagcaaccgctcaacttttaacctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacgctcgggtctttcatcaaaa 19324047  T
Q  176 agaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccg 244  Q
    ||| |  || || ||||||||  |||||||| |||| || ||||||||| | |||||||||||||||||    
T  19324048 agaggcctcgttcaatcaattactagataaaattaaacttcaatcataccggtggctgaaagcgaaccg 19324116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 244
Target Start/End: Original strand, 32575193 - 32575361
Alignment:
Q  76 gcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaa 175  Q
    |||| ||||| || ||||| |||||| || ||||||| || ||||| ||||||||||||||||| ||  | ||||||||  ||||  | |||||  ||||    
T  32575193 gcgggttttccaaaagcaatcgctcagcttttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaa 32575292  T
Q  176 agaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccg 244  Q
    ||| |  || || ||||||||  |||||||| |||| || ||||||||||| |||||||||||||||||    
T  32575293 agaggcctcgttcaatcaattactagataaaattaaacttcaatcatactggtggctgaaagcgaaccg 32575361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 244
Target Start/End: Original strand, 38141963 - 38142131
Alignment:
Q  76 gcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaa 175  Q
    |||| ||||| || ||||| |||||| || ||||||| || ||||| ||||||||||||||||| ||  | ||||||||  ||||  | |||||  ||||    
T  38141963 gcgggttttccaaaagcaaccgctcagcttttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaa 38142062  T
Q  176 agaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccg 244  Q
    ||| |  || || | |||||| ||||||||| |||| || ||||||||||| |||||||||||||||||    
T  38142063 agaggcctcgttcattcaattattagataaaattaaacttcaatcatactggtggctgaaagcgaaccg 38142131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 244
Target Start/End: Original strand, 29626637 - 29626805
Alignment:
Q  76 gcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaa 175  Q
    |||| ||||| || ||||| |||||| || ||||||| || ||||| ||||||||||||||||| ||  | ||||||||  |||| || |||||  ||||    
T  29626637 gcgggttttccaaaagcaaccgctcagcttttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcggatctttcatcaaaa 29626736  T
Q  176 agaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccg 244  Q
    ||| |  || || | ||||||  | |||||| |||| || |||| ||||||||||||||||||||||||    
T  29626737 agaggcctcgttcattcaattacttgataaaattaaacttcaataatactgatggctgaaagcgaaccg 29626805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 244
Target Start/End: Original strand, 15669415 - 15669583
Alignment:
Q  76 gcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaa 175  Q
    |||| ||||| || ||||| ||||||||| ||||||| || ||||| ||||||||||||||||| |   | ||||||||  ||||  | ||||   ||||    
T  15669415 gcgggttttccaaaagcaaccgctcaacttttaatctcatatggctttcttgtgtgtgggtgatttcgatagaaagaaacactcgggtctttcttcaaaa 15669514  T
Q  176 agaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccg 244  Q
    ||| |  |  || ||||||||  |||||||| |||| || ||||||||||| |||||||||||||||||    
T  15669515 agaggccttgttcaatcaattactagataaaattaaacttcaatcatactggtggctgaaagcgaaccg 15669583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 27324434 - 27324476
Alignment:
Q  8 caaaggaattatgtatcaggtggattttgaggtttttgtttta 50  Q
    ||||||||| |||||||||||||||||||||||| ||||||||    
T  27324434 caaaggaatcatgtatcaggtggattttgaggttgttgtttta 27324476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 8123965 - 8124010
Alignment:
Q  193 aattgttagataaagttaagctccaatcatactgatggctgaaagc 238  Q
    |||||||||||||||||||||| ||||| ||||| ||| |||||||    
T  8123965 aattgttagataaagttaagcttcaatcttactggtggttgaaagc 8124010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 244
Target Start/End: Complemental strand, 29126233 - 29126067
Alignment:
Q  76 gcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaa 175  Q
    |||| ||||| || ||||| |||||| || ||||||| || ||||| |||||||||  |||||| ||  | ||||||||  ||||  | |||||  ||||    
T  29126233 gcgggttttccaaaagcaaccgctcagcttttaatctcatatggctttcttgtgtg--ggtgatttggatagaaagaaacactcgggtctttcatcaaaa 29126136  T
Q  176 agaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccg 244  Q
    ||| |  || || ||||||||  |||||||| ||||  | ||||||||||| |||||||||||||||||    
T  29126135 agaggcctcgttcaatcaattactagataaaattaaatttcaatcatactggtggctgaaagcgaaccg 29126067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 70 - 245
Target Start/End: Complemental strand, 4532463 - 4532288
Alignment:
Q  70 cctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttca 169  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  4532463 cctttggcggcttctctaacagcaaacgctcaactcttaatcttatttgactatcttgtgtgtgggtgatctgacttgaaaggaatgctcgcatatttca 4532364  T
Q  170 ctaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccga 245  Q
    | ||||||||  |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  4532363 ccaaaaagaaacttcttttaatcaattgttagataaagttaagcaccaatcatactggtggctgaaagcgaaccga 4532288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 70 - 241
Target Start/End: Original strand, 33936151 - 33936322
Alignment:
Q  70 cctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttca 169  Q
    |||||||||| |||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||| || |||||||| |||||||| || |||||    
T  33936151 cctttagcggtttttctaacagcaaacacacaactcttaatcttatttagctatcttgtgtgtgggtgatttggcttgaaaggaatgctcggatctttca 33936250  T
Q  170 ctaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaa 241  Q
    | |||| |||| ||| |||||||||||| || ||||||||||||| ||||| |||||||  |||||||||||    
T  33936251 ccaaaatgaagattcgtttaatcaattgctaaataaagttaagcttcaatcttactgataactgaaagcgaa 33936322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 76 - 237
Target Start/End: Complemental strand, 31911928 - 31911767
Alignment:
Q  76 gcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaa 175  Q
    ||||||| ||||| ||||| |||||| || ||||||||||||||||||||||||| |||||||| || |||||||| |||||||  || |||||| ||||    
T  31911928 gcggcttctctaatagcaaccgctcagcttttaatcttatttggctatcttgtgtatgggtgatttgacttgaaaggaatgctcagatctttcaccaaaa 31911829  T
Q  176 agaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaag 237  Q
    ||||||||| |||||||||||| |||||||||||||||| ||||| ||||  ||||||||||    
T  31911828 agaagtttcgtttaatcaattgctagataaagttaagcttcaatcttactagtggctgaaag 31911767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 70 - 220
Target Start/End: Complemental strand, 19228274 - 19228125
Alignment:
Q  70 cctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttca 169  Q
    |||||||||| ||||| |||| ||||| |||| ||||||| || ||||||||||| |||||||||||||| || |||||||| |||||||| || |||||    
T  19228274 cctttagcggtttttcaaacaacaaacactcagctcttaacct-atttggctatcatgtgtgtgggtgatttggcttgaaaggaatgctcggatctttca 19228176  T
Q  170 ctaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatc 220  Q
    | ||||||||| |||||||||||||||| |||||||||| ||||| |||||    
T  19228175 ccaaaaagaagcttcttttaatcaattgctagataaagtcaagcttcaatc 19228125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 70 - 235
Target Start/End: Original strand, 34549075 - 34549240
Alignment:
Q  70 cctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttca 169  Q
    |||||| ||| ||||| |||| ||||| |||| ||||||| |||||||||||||| |||||||||||||| || |||||||| |||| | | || ||| |    
T  34549075 cctttatcggtttttcaaacaacaaacactcagctcttaaccttatttggctatcatgtgtgtgggtgatatggcttgaaaggaatgataggatctttaa 34549174  T
Q  170 ctaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaa 235  Q
    | ||||||||| |||||||||||||||| |||||||||| ||||| ||||| ||||| ||||||||    
T  34549175 ccaaaaagaagcttcttttaatcaattgctagataaagtcaagcttcaatcttactggtggctgaa 34549240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 109 - 238
Target Start/End: Original strand, 20505398 - 20505527
Alignment:
Q  109 atcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaagtttcttttaatcaattgttagataaagt 208  Q
    ||||||| ||| ||||||||||||||||||| || |||||||| ||||||||  | |||||| ||| ||||| |||  ||||||||||| ||||||||||    
T  20505398 atcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 20505497  T
Q  209 taagctccaatcatactgatggctgaaagc 238  Q
    |||||| ||||| ||||| |||||||||||    
T  20505498 taagcttcaatcttactggtggctgaaagc 20505527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 51534753 - 51534679
Alignment:
Q  171 taaaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccga 245  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  51534753 taaaaagaaacttcttttaatcaattgttagataaagttaagctccaatcatattggtggctgaaagcgaaccga 51534679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 238
Target Start/End: Original strand, 26676664 - 26676781
Alignment:
Q  121 tatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatc 220  Q
    ||||||||||||||||||| || |||||||| ||||||||  | |||||| ||| ||||| |||  ||||||||||| |||||||||||||||| |||||    
T  26676664 tatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatc 26676763  T
Q  221 atactgatggctgaaagc 238  Q
     ||||| |||||||||||    
T  26676764 ttactggtggctgaaagc 26676781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 238
Target Start/End: Complemental strand, 33676843 - 33676714
Alignment:
Q  109 atcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaagtttcttttaatcaattgttagataaagt 208  Q
    ||||||| ||| ||||||||||||| ||||| || |||||||| |||||||   | |||||| ||| |||||||||  ||||||||||| ||||||||||    
T  33676843 atcttatatggttatcttgtgtgtgagtgatttggcttgaaaggaatgctcaggtttttcaccaaacagaagtttcgattaatcaattgctagataaagt 33676744  T
Q  209 taagctccaatcatactgatggctgaaagc 238  Q
    |||||| ||||| ||||  |||||||||||    
T  33676743 taagcttcaatcttactagtggctgaaagc 33676714  T

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Target: chr1; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 131 - 238
Target Start/End: Complemental strand, 28756803 - 28756696
Alignment:
Q  131 gtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatgg 230  Q
    ||||||||| || |||||||| ||||||||  | |||||| ||| ||||| |||  |||||||||||||||||||||||||||| ||||| ||||| |||    
T  28756803 gtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgttagataaagttaagcttcaatcttactggtgg 28756704  T
Q  231 ctgaaagc 238  Q
    ||||||||    
T  28756703 ctgaaagc 28756696  T

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Target: chr1; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 244
Target Start/End: Original strand, 15759681 - 15759849
Alignment:
Q  76 gcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaa 175  Q
    |||| ||||| || ||||| ||||||||| ||||||| || ||||| |||||||||| |||||| ||  | ||||||||  ||||  | |||||  ||||    
T  15759681 gcgggttttccaaaagcaaccgctcaacttttaatctcatatggctttcttgtgtgtaggtgatttggatagaaagaaacactcgggtctttcatcaaaa 15759780  T
Q  176 agaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccg 244  Q
    ||| || || || ||||||||  |||||||| |||| || ||||||||||| |||||||||||||||||    
T  15759781 agaggtctcgttcaatcaattactagataaaattaaacttcaatcatactggtggctgaaagcgaaccg 15759849  T

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Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 241
Target Start/End: Complemental strand, 27007747 - 27007602
Alignment:
Q  96 cgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaagtttcttttaatcaat 195  Q
    |||||| || |||| ||||| || |||||||||||||||||||| || |||||||  |||| |||  | |||||| ||||||||  ||| ||||||||||    
T  27007747 cgctcagcttttaaacttatatgactatcttgtgtgtgggtgatttggcttgaaatgaatgttcgggtctttcaccaaaaagaatcttcgtttaatcaat 27007648  T
Q  196 tgttagataaagttaagctccaatcatactgatggctgaaagcgaa 241  Q
    || |||||| ||||||  | |||||||| || | ||||||||||||    
T  27007647 tgctagatagagttaaatttcaatcatattggtagctgaaagcgaa 27007602  T

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Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 238
Target Start/End: Original strand, 46731822 - 46731951
Alignment:
Q  109 atcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaagtttcttttaatcaattgttagataaagt 208  Q
    ||||||| ||| ||||||||||||||||||| || |||||||| |||  |||  | |||||| ||| | ||| |||  ||||||||||| ||||||||||    
T  46731822 atcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaataatcgggtttttcaccaaacaaaagcttcgattaatcaattgctagataaagt 46731921  T
Q  209 taagctccaatcatactgatggctgaaagc 238  Q
    |||||| ||||| | ||| || ||||||||    
T  46731922 taagcttcaatcttgctggtgactgaaagc 46731951  T

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Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 74 - 237
Target Start/End: Original strand, 24393632 - 24393795
Alignment:
Q  74 tagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaa 173  Q
    |||||| |||||||||| ||||| |||  ||||||||||||||||||||||||||||||||||||| || | |||||| |||||| | || |||||| ||    
T  24393632 tagcggtttttctaacaacaaacactccgctcttaatcttatttggctatcttgtgtgtgggtgatttggcatgaaaggaatgctggaatctttcaccaa 24393731  T
Q  174 aaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaag 237  Q
    ||||||| ||| |||||||||||||| |||||||||||||  ||||| ||||| ||||||||||    
T  24393732 aaagaagcttcgtttaatcaattgtttgataaagttaagcctcaatcttactggtggctgaaag 24393795  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 12912636 - 12912471
Alignment:
Q  70 cctttagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttca 169  Q
    |||||| ||| ||||| |||| ||||| |||| ||||||| |||||||||||||| |||||||||||||| || |||||||| |||| | | || |||||    
T  12912636 cctttatcggtttttcaaacaacaaacactcagctcttaaccttatttggctatcatgtgtgtgggtgatatggcttgaaaggaatgattggatctttca 12912537  T
Q  170 ctaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaa 235  Q
    | ||||||||| |||||||||||||||| |||||||||| ||||| ||||| ||||| ||||||||    
T  12912536 ccaaaaagaagcttcttttaatcaattgctagataaagtcaagcttcaatcttactggtggctgaa 12912471  T

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Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 74 - 238
Target Start/End: Complemental strand, 18972993 - 18972828
Alignment:
Q  74 tagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaa 173  Q
    |||||| |||||||||| ||||  |||  ||||||||||||||||||||||||||||||||||||| || |||||||| |||||||  || |||||| ||    
T  18972993 tagcggtttttctaacaacaaaaactccgctcttaatcttatttggctatcttgtgtgtgggtgatttggcttgaaaggaatgctctaatctttcaccaa 18972894  T
Q  174 aaagaagtttcttttaatcaattg-ttagataaagttaagctccaatcatactgatggctgaaagc 238  Q
    ||||||| ||| |||||||||||| || |||||||||||||| ||||| ||||  |||||||||||    
T  18972893 aaagaagcttcgtttaatcaattgctttgataaagttaagcttcaatcttactcgtggctgaaagc 18972828  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 241
Target Start/End: Original strand, 6029095 - 6029215
Alignment:
Q  121 tatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaagtttcttttaatcaattgttagataaagttaagctccaatc 220  Q
    |||||||||| |||||||| || |||||||| ||||||||  | |||||| ||| ||||| |||  ||||||||||| |||||||||||||||| |||||    
T  6029095 tatcttgtgtttgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatc 6029194  T
Q  221 atactgatggctgaaagcgaa 241  Q
     || |  ||||||||||||||    
T  6029195 ttattagtggctgaaagcgaa 6029215  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 244
Target Start/End: Original strand, 7093646 - 7093814
Alignment:
Q  76 gcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaa 175  Q
    |||| ||||| || ||||| |||||| || ||||||| || ||||| ||||||||||||||||| ||  | ||||||||  |||   | |||||  ||||    
T  7093646 gcgggttttccaaaagcaaccgctcagcttttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcaggtctttcatcaaaa 7093745  T
Q  176 agaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccg 244  Q
    ||| |  || || | ||||||  |||||||| |||| || ||||||||||| |||||||||||||||||    
T  7093746 agaggcctcgttcattcaattactagataaaattaaacttcaatcatactggtggctgaaagcgaaccg 7093814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 74 - 238
Target Start/End: Original strand, 23515 - 23680
Alignment:
Q  74 tagcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaa 173  Q
    |||||| |||||||||| ||||  |||  ||||||||||||||||||||||||||||||||||||| || |||||||| |||||||  || |||||| ||    
T  23515 tagcggtttttctaacaacaaaaactccgctcttaatcttatttggctatcttgtgtgtgggtgatttggcttgaaaggaatgctcaaatctttcaccaa 23614  T
Q  174 aaagaagtttcttttaatcaattg-ttagataaagttaagctccaatcatactgatggctgaaagc 238  Q
    ||||||| ||| |||||||||||| || |||||||||||||| || || ||||  |||||||||||    
T  23615 aaagaagcttcgtttaatcaattgctttgataaagttaagcttcattcttactcgtggctgaaagc 23680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 235
Target Start/End: Original strand, 94620 - 94757
Alignment:
Q  98 ctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaagtttcttttaatcaattg 197  Q
    |||| ||||||| |||||||||||||| | |||||||||||| || |||||||| |||| ||| || |||||| ||||||||| ||||||||||||||||    
T  94620 ctcagctcttaaccttatttggctatcatttgtgtgggtgatttggcttgaaaggaatgatcggatctttcaccaaaaagaagcttcttttaatcaattg 94719  T
Q  198 ttagataaagttaagctccaatcatactgatggctgaa 235  Q
     |||||||||| ||||| ||||| ||||| ||||||||    
T  94720 ctagataaagtcaagcttcaatcttactggtggctgaa 94757  T

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Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 109 - 238
Target Start/End: Complemental strand, 10436778 - 10436649
Alignment:
Q  109 atcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaagtttcttttaatcaattgttagataaagt 208  Q
    ||||||| ||| ||||||||||||||||||| || |||||||| ||||||||  | |||||| ||| ||||| |||  ||||||||||| ||||||||||    
T  10436778 atcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 10436679  T
Q  209 taagctccaatcatactgatggctgaaagc 238  Q
    |||||| ||||| ||||| |||||||||||    
T  10436678 taagcttcaatcttactggtggctgaaagc 10436649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 238
Target Start/End: Original strand, 20406132 - 20406261
Alignment:
Q  109 atcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaagtttcttttaatcaattgttagataaagt 208  Q
    ||||||| ||| ||||||||||||||||||| || |||||||| |||||||| || |||||| ||| ||||| |||  |||| |||||| ||||||||||    
T  20406132 atcttatatggttatcttgtgtgtgggtgatttgacttgaaaggaatgctcggatttttcaccaaacagaagcttcgattaagcaattgctagataaagt 20406231  T
Q  209 taagctccaatcatactgatggctgaaagc 238  Q
    |||||| ||||| ||||  |||||||||||    
T  20406232 taagcttcaatcttactagtggctgaaagc 20406261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 244
Target Start/End: Complemental strand, 53459287 - 53459119
Alignment:
Q  76 gcggcttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaa 175  Q
    |||| ||||| || ||||| ||||||||| ||||||| || || || ||||||||||||||||| ||  | ||||||||  ||||  | |||||  ||||    
T  53459287 gcgggttttccaaaagcaaccgctcaacttttaatctcatatgactttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaa 53459188  T
Q  176 agaagtttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccg 244  Q
    ||| |  || || ||||||||  |||||||| |||| || ||||||||||| |||||||||||||||||    
T  53459187 agaggcctcgttcaatcaattactagataaaattaaacttcaatcatactggtggctgaaagcgaaccg 53459119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 241
Target Start/End: Original strand, 15029831 - 15029966
Alignment:
Q  106 ttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaagtttcttttaatcaattgttagataa 205  Q
    ||||||||||  || |||||| || ||||||||| || |||||||  |||||| |  | |||||| ||| | ||| |||  ||||||||||| |||||||    
T  15029831 ttaatcttataaggttatcttatgcgtgggtgatttggcttgaaatgaatgcttgggtttttcaccaaacaaaagcttcgattaatcaattgctagataa 15029930  T
Q  206 agttaagctccaatcatactgatggctgaaagcgaa 241  Q
    ||||||||| ||||| || || ||| ||||||||||    
T  15029931 agttaagcttcaatcttattggtggttgaaagcgaa 15029966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 244
Target Start/End: Original strand, 8829 - 8992
Alignment:
Q  81 ttttctaacagcaaacgctcaactcttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaagaaatgctcgcatatttcactaaaaagaag 180  Q
    ||||| || ||||| |||||| || ||||||| || ||||| ||||||||||||||||| ||  | |||||||| |||||  | |||||   |||||| |    
T  8829 ttttccaaaagcaaccgctcagcttttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacgctcgggtctttcatctaaaagagg 8928  T
Q  181 tttcttttaatcaattgttagataaagttaagctccaatcatactgatggctgaaagcgaaccg 244  Q
      || ||| |||||||  |||||||| |||| || ||||||||||| |||||||||||||||||    
T  8929 cctcgtttcatcaattactagataaaattaaacttcaatcatactggtggctgaaagcgaaccg 8992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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