View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11981_high_4 (Length: 439)
Name: NF11981_high_4
Description: NF11981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11981_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 20 - 425
Target Start/End: Complemental strand, 22042620 - 22042216
Alignment:
| Q |
20 |
taacaattgcaattaccttgcgaatggtttccatatactctggcaagcgcacatggcgaaaatattccacacaagataatgatactagtatcttcaatga |
119 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22042620 |
taacaattgcagttaccttgcgaatggtttccatatactctggcaagcgcacatggcgaaaatattccacacaagataatgatactagtatcttcaatga |
22042521 |
T |
|
| Q |
120 |
gatttcggtttgtatttcttgagcaaatgtggaactcaatttgtgctttgttacagatagtgcaaatactacaaccatgagaaaagcagattccgcggtt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22042520 |
gatttcggtttgtatttcttgagcaaatgtggaactcaatttgtgctttgttacagatagtgcaaatactacaaccatgagaaaagcagattccgcggtt |
22042421 |
T |
|
| Q |
220 |
tattcaaaatttgtaagcaactcatcttcttttcctttaagatccataaaccactttcctgtgtccaaagtaaatatcgcgacagtattcccatataaga |
319 |
Q |
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| T |
22042420 |
ttttcaaaatttgtaagcaactcatcttcttttcctttaagatccat-aaccactttcctgtgtccaaagtaaatatcgcgatagtattcccatataaga |
22042322 |
T |
|
| Q |
320 |
ttctccactatattcttattttcttcgtcagctgaaacatatagattgcagaaaatacccgttacagctcctgcttccttgaagaggatattatctggat |
419 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22042321 |
ttctccactatattcttattttcttcgtcagctaaaacatatagattgcagaaaatacccgttacagctcctgcttccttgaagaggatattatctggat |
22042222 |
T |
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| Q |
420 |
gttctt |
425 |
Q |
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|||||| |
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| T |
22042221 |
gttctt |
22042216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 425
Target Start/End: Original strand, 2424796 - 2425200
Alignment:
| Q |
20 |
taacaattgcaattaccttgcgaatggtttccatatactctggcaagcgcacatggcgaaaatattccacacaagataatgatactagtatcttcaatga |
119 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2424796 |
taacacttgcaattaccttgcgaatggtttccatatactctggcaagcgaacatggcgaaaatattccacacaagataatgatactagtatcttcaatga |
2424895 |
T |
|
| Q |
120 |
gatttcggtttgtatttcttgagcaaatgtggaactcaatttgtgctttgttacagatagtgcaaatactacaaccatgagaaaagcagattccgcggtt |
219 |
Q |
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|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
2424896 |
gacttcggtttgtatttcttgagcaaatttggaactcaatttgtgctttgttacagctagtgcaaatactacaaccatgagaaaagcagattccgcgatt |
2424995 |
T |
|
| Q |
220 |
tattcaaaatttgtaagcaactcatcttcttttcctttaagatccataaaccactttcctgtgtccaaagtaaatatcgcgacagtattcccatataaga |
319 |
Q |
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| ||| |||| ||||||||| ||||||||||||||||||||| | | | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2424996 |
ttttcgaaatccgtaagcaacacatcttcttttcctttaagatgcgt-agccactttcctgtgtccaaagtaaatatcgcgacagtattcccatataaga |
2425094 |
T |
|
| Q |
320 |
ttctccactatattcttattttcttcgtcagctgaaacatatagattgcagaaaatacccgttacagctcctgcttccttgaagaggatattatctggat |
419 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
2425095 |
ttctccactatattcttattttcttcgtcagctaaaacatattgattgcagaaaacacctgttacagctcctgcttccttgaagaggatattatctagat |
2425194 |
T |
|
| Q |
420 |
gttctt |
425 |
Q |
| |
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|||||| |
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|
| T |
2425195 |
gttctt |
2425200 |
T |
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