View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11981_low_1 (Length: 577)

Name: NF11981_low_1
Description: NF11981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11981_low_1
NF11981_low_1
[»] chr3 (29 HSPs)
chr3 (2-277)||(32650496-32650771)
chr3 (346-559)||(32650214-32650427)
chr3 (5-48)||(48651064-48651107)
chr3 (5-47)||(21564689-21564731)
chr3 (2-46)||(37372863-37372907)
chr3 (6-49)||(19664356-19664399)
chr3 (5-48)||(21564341-21564384)
chr3 (7-50)||(21656713-21656756)
chr3 (5-48)||(47473075-47473118)
chr3 (5-47)||(1016890-1016932)
chr3 (5-47)||(8097214-8097256)
chr3 (5-47)||(36315254-36315296)
chr3 (2-48)||(52821340-52821386)
chr3 (6-47)||(1448641-1448682)
chr3 (5-46)||(1687498-1687539)
chr3 (5-46)||(3696965-3697005)
chr3 (5-46)||(19229243-19229284)
chr3 (7-48)||(19268337-19268378)
chr3 (7-48)||(20760355-20760396)
chr3 (2-55)||(35608029-35608082)
chr3 (7-48)||(48651443-48651484)
chr3 (2-47)||(51562352-51562397)
chr3 (6-46)||(19228887-19228927)
chr3 (7-47)||(21890365-21890405)
chr3 (2-46)||(37248146-37248190)
chr3 (7-47)||(38446294-38446334)
chr3 (7-47)||(44152517-44152557)
chr3 (5-49)||(50287381-50287425)
chr3 (5-45)||(53196206-53196246)
[»] chr8 (17 HSPs)
chr8 (2-53)||(24430851-24430902)
chr8 (5-50)||(38107292-38107337)
chr8 (7-54)||(260172-260219)
chr8 (5-48)||(440656-440699)
chr8 (7-54)||(655702-655749)
chr8 (7-54)||(841437-841484)
chr8 (5-48)||(43468908-43468951)
chr8 (2-44)||(6016375-6016417)
chr8 (5-47)||(9884673-9884715)
chr8 (6-47)||(1293304-1293345)
chr8 (7-48)||(4648966-4649007)
chr8 (5-46)||(22684241-22684282)
chr8 (7-48)||(33651657-33651698)
chr8 (2-47)||(33652031-33652076)
chr8 (7-47)||(2533469-2533509)
chr8 (7-47)||(7434732-7434772)
chr8 (7-47)||(24430477-24430517)
[»] chr7 (17 HSPs)
chr7 (6-52)||(45723774-45723820)
chr7 (5-47)||(1469775-1469817)
chr7 (7-53)||(47281410-47281456)
chr7 (2-47)||(11476835-11476880)
chr7 (5-46)||(42888722-42888763)
chr7 (5-49)||(43968541-43968585)
chr7 (6-49)||(39033876-39033919)
chr7 (5-47)||(27364621-27364663)
chr7 (5-47)||(47271799-47271841)
chr7 (5-47)||(47272174-47272216)
chr7 (2-47)||(4923366-4923411)
chr7 (7-56)||(40520724-40520773)
chr7 (5-46)||(40851130-40851171)
chr7 (5-50)||(48628998-48629043)
chr7 (7-47)||(3797448-3797488)
chr7 (6-46)||(23842152-23842192)
chr7 (7-47)||(47119837-47119877)
[»] chr4 (34 HSPs)
chr4 (5-51)||(36444697-36444743)
chr4 (5-47)||(22298711-22298753)
chr4 (7-49)||(48551668-48551710)
chr4 (7-48)||(39699863-39699903)
chr4 (7-55)||(26017261-26017309)
chr4 (5-53)||(28264483-28264531)
chr4 (5-48)||(17847406-17847449)
chr4 (5-48)||(19169048-19169091)
chr4 (5-48)||(28160237-28160280)
chr4 (2-49)||(30141356-30141403)
chr4 (5-52)||(31208560-31208607)
chr4 (7-46)||(33693618-33693657)
chr4 (7-49)||(5227585-5227627)
chr4 (5-47)||(33807687-33807729)
chr4 (2-44)||(36834955-36834997)
chr4 (7-53)||(48552001-48552047)
chr4 (6-44)||(48707987-48708025)
chr4 (7-48)||(2055101-2055142)
chr4 (7-48)||(19496430-19496471)
chr4 (7-48)||(22298335-22298376)
chr4 (5-46)||(25734505-25734546)
chr4 (6-51)||(28159855-28159900)
chr4 (5-46)||(28812194-28812235)
chr4 (5-46)||(31973784-31973825)
chr4 (2-51)||(33693235-33693284)
chr4 (5-54)||(49118804-49118853)
chr4 (5-46)||(50276045-50276086)
chr4 (7-48)||(50276419-50276460)
chr4 (2-47)||(51371355-51371400)
chr4 (14-50)||(20534397-20534433)
chr4 (7-51)||(23135261-23135305)
chr4 (2-46)||(23553254-23553298)
chr4 (5-49)||(28264836-28264880)
chr4 (7-47)||(36444588-36444628)
[»] chr1 (27 HSPs)
chr1 (2-44)||(43380672-43380714)
chr1 (6-50)||(38473909-38473953)
chr1 (7-49)||(45670390-45670432)
chr1 (5-46)||(52146840-52146881)
chr1 (6-46)||(18917343-18917383)
chr1 (5-48)||(33194576-33194619)
chr1 (5-48)||(36157959-36158002)
chr1 (2-53)||(45670736-45670787)
chr1 (5-51)||(16505139-16505185)
chr1 (7-57)||(24036723-24036773)
chr1 (7-49)||(32373836-32373878)
chr1 (5-47)||(34971261-34971303)
chr1 (5-47)||(46051643-46051685)
chr1 (5-47)||(49594868-49594910)
chr1 (5-46)||(9878691-9878732)
chr1 (9-53)||(9962613-9962658)
chr1 (5-50)||(16508181-16508226)
chr1 (5-46)||(18782371-18782412)
chr1 (7-52)||(18892523-18892567)
chr1 (5-46)||(19274377-19274418)
chr1 (7-48)||(36781077-36781118)
chr1 (5-46)||(41105834-41105875)
chr1 (7-48)||(46051295-46051336)
chr1 (6-55)||(49973751-49973800)
chr1 (6-50)||(23228477-23228521)
chr1 (2-46)||(23767322-23767366)
chr1 (6-46)||(37216714-37216754)
[»] chr2 (26 HSPs)
chr2 (5-53)||(23671712-23671760)
chr2 (2-45)||(22066671-22066714)
chr2 (5-47)||(41500775-41500817)
chr2 (6-48)||(42629801-42629843)
chr2 (5-50)||(772228-772272)
chr2 (2-50)||(27328400-27328449)
chr2 (2-46)||(9276764-9276808)
chr2 (5-49)||(23673155-23673199)
chr2 (2-50)||(37838487-37838535)
chr2 (2-45)||(19915915-19915958)
chr2 (5-47)||(920839-920881)
chr2 (6-56)||(2094664-2094714)
chr2 (2-52)||(3430526-3430576)
chr2 (7-45)||(7379157-7379195)
chr2 (5-47)||(31214099-31214141)
chr2 (6-52)||(36444511-36444557)
chr2 (5-47)||(42630155-42630197)
chr2 (7-48)||(12760033-12760074)
chr2 (14-55)||(37654296-37654337)
chr2 (7-48)||(38751242-38751283)
chr2 (5-49)||(2456203-2456247)
chr2 (2-46)||(19511440-19511484)
chr2 (7-51)||(27328779-27328823)
chr2 (5-45)||(33865549-33865589)
chr2 (7-47)||(36211242-36211282)
chr2 (7-51)||(37838093-37838137)
[»] scaffold0117 (1 HSPs)
scaffold0117 (6-57)||(14485-14536)
[»] chr5 (27 HSPs)
chr5 (5-47)||(39125942-39125984)
chr5 (7-48)||(30298033-30298074)
chr5 (2-47)||(33003231-33003276)
chr5 (5-50)||(33760752-33760797)
chr5 (2-49)||(3352280-3352327)
chr5 (5-48)||(20408726-20408769)
chr5 (8-50)||(6331192-6331234)
chr5 (5-47)||(11001010-11001052)
chr5 (7-49)||(11935292-11935334)
chr5 (7-49)||(17002440-17002482)
chr5 (5-47)||(19661913-19661955)
chr5 (5-51)||(30863095-30863141)
chr5 (5-55)||(31710475-31710525)
chr5 (7-49)||(35861489-35861531)
chr5 (7-48)||(445129-445170)
chr5 (7-48)||(6600420-6600461)
chr5 (2-47)||(20079536-20079581)
chr5 (7-48)||(26035271-26035312)
chr5 (5-46)||(39824749-39824789)
chr5 (7-47)||(6332971-6333011)
chr5 (5-49)||(8215715-8215759)
chr5 (2-50)||(16751959-16752007)
chr5 (7-47)||(26593564-26593604)
chr5 (5-49)||(27116376-27116420)
chr5 (7-47)||(28078689-28078729)
chr5 (6-50)||(33002875-33002919)
chr5 (5-53)||(41282153-41282201)
[»] chr6 (14 HSPs)
chr6 (2-51)||(17428174-17428223)
chr6 (2-47)||(29050089-29050134)
chr6 (5-49)||(35224173-35224217)
chr6 (5-47)||(3408035-3408077)
chr6 (5-47)||(26393291-26393333)
chr6 (2-47)||(1077427-1077472)
chr6 (5-46)||(17514934-17514975)
chr6 (5-46)||(30457506-30457547)
chr6 (7-47)||(10256054-10256094)
chr6 (2-46)||(25820456-25820500)
chr6 (7-47)||(26230839-26230879)
chr6 (5-56)||(29050465-29050517)
chr6 (5-45)||(30378836-30378876)
chr6 (5-49)||(30379210-30379254)
[»] scaffold0031 (1 HSPs)
scaffold0031 (7-55)||(101285-101333)
[»] scaffold0122 (1 HSPs)
scaffold0122 (5-47)||(11182-11224)
[»] scaffold0727 (1 HSPs)
scaffold0727 (2-46)||(5375-5419)
[»] scaffold0416 (1 HSPs)
scaffold0416 (7-47)||(6589-6629)


Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 2 - 277
Target Start/End: Complemental strand, 32650771 - 32650496
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacctataaaaaatggaaattgtataaatattgtgtcgatttcaaagtggtcatagaaa 101  Q
    |||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32650771 ttagaaaaaacgaaaaacttaaatgacatttagatccatttgacctataaaaaatggaaattgtataaatattgtgtcgatttcaaagtggtcatagaaa 32650672  T
Q  102 catttctctactatcgctctaatcatatttgtctatcttttataaaatttggttttccttttaataagatagaaatatatcttttatactatatacaaaa 201  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32650671 catttctctactatcgctctaatcatatttatctatcttttataaaatttggttttccttctaataagatagaaatatatcttttatactatatacaaaa 32650572  T
Q  202 ttgaaatgaaattaagatgaaaaatgatctggtccaccaaagttttgttacataccaatattctctagacaaactc 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32650571 ttgaaatgaaattaagatgaaaaatgatctggtccaccaaagttttgttacgtaccaatattctctagacaaactc 32650496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 346 - 559
Target Start/End: Complemental strand, 32650427 - 32650214
Alignment:
Q  346 gacatgacattaaataattgaatgttatgtgctatataatatatgcaacaaaaatatagggcacaaaagtgttagccaatacccttnnnnnnngtgttag 445  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||       |||||||    
T  32650427 gacatgacattaaataattgaatgttatgtgctatataatatatacaacaaaaatatagggcacaaaagtgtcagccaatacccttaaaaaaagtgttag 32650328  T
Q  446 ccaattaagatcgattgtttctacaaataaaacactatcatcaattatttacaataatgcatgccatgtggatacacatacacaaggtatttcgaaaatt 545  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32650327 ccaattaagatcgattgtttgtacaaataaaacactatcatcaattatttacaataatgcatgccatgtggatacacatacacaaggtatttcgaaaatt 32650228  T
Q  546 tgatgtgcccttct 559  Q
    ||||||||||||||    
T  32650227 tgatgtgcccttct 32650214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 48651107 - 48651064
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||||||||||||||||| || ||||||||||||||||||||    
T  48651107 ggaaaaacgaaaaacttaaaggacatttagatgcatttgaccta 48651064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 21564689 - 21564731
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||||| ||| ||||||||||||||||||    
T  21564689 ggaaaaacgaaaaacttaaaggatctttagatgcatttgacct 21564731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 37372863 - 37372907
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    ||||||||||| |||||||||||||| ||||||||| ||||||||    
T  37372863 ttaggaaaaacaaaaaacttaaatgacatttagatgtatttgacc 37372907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 19664399 - 19664356
Alignment:
Q  6 gaaaaacgaaaaacttaaatgatatttagatgcatttgacctat 49  Q
    ||||||||||||||||||| ||  ||||||||||||||||||||    
T  19664399 gaaaaacgaaaaacttaaaggacctttagatgcatttgacctat 19664356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 21564384 - 21564341
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||||||||||||||||| ||  |||||||||||||||||||    
T  21564384 ggaaaaacgaaaaacttaaaggacctttagatgcatttgaccta 21564341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 21656713 - 21656756
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacctata 50  Q
    |||||||||||||||||| ||  |||||||||||||||||||||    
T  21656713 aaaaacgaaaaacttaaaggacctttagatgcatttgacctata 21656756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 47473118 - 47473075
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    ||||||||||||||||||||  || |||||||||||||||||||    
T  47473118 ggaaaaacgaaaaacttaaagaatctttagatgcatttgaccta 47473075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 1016932 - 1016890
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||||| ||  ||||||||||||||||||    
T  1016932 ggaaaaacgaaaaacttaaaggacctttagatgcatttgacct 1016890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 8097214 - 8097256
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||||| ||  ||||||||||||||||||    
T  8097214 ggaaaaacgaaaaacttaaaggacctttagatgcatttgacct 8097256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 36315254 - 36315296
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||||| ||  ||||||||||||||||||    
T  36315254 ggaaaaacgaaaaacttaaaggacctttagatgcatttgacct 36315296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 52821340 - 52821386
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    ||||||||||||||||||||||| ||  |||| ||||||||||||||    
T  52821340 ttaggaaaaacgaaaaacttaaaggacctttaaatgcatttgaccta 52821386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 1448682 - 1448641
Alignment:
Q  6 gaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    ||||||||||||||||||| ||  ||||||||||||||||||    
T  1448682 gaaaaacgaaaaacttaaaggacctttagatgcatttgacct 1448641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 1687539 - 1687498
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    |||||||||||||||||||| ||  |||||||||||||||||    
T  1687539 ggaaaaacgaaaaacttaaaggacctttagatgcatttgacc 1687498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 3697005 - 3696965
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  3697005 ggaaaaacgaaaaacttaaa-gatctttagatgcatttgacc 3696965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 19229243 - 19229284
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    |||||||||||||||||||| ||  |||||||||||||||||    
T  19229243 ggaaaaacgaaaaacttaaaggacctttagatgcatttgacc 19229284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 19268378 - 19268337
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||||||||||||||| ||| |||||||| ||||||||||    
T  19268378 aaaaacgaaaaacttaaaggatttttagatgtatttgaccta 19268337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 20760355 - 20760396
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||||||||||||||| ||  |||||||||||||||||||    
T  20760355 aaaaacgaaaaacttaaaggacctttagatgcatttgaccta 20760396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 35608082 - 35608029
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacctataaaaaa 55  Q
    ||||| |||| |||||||||||| ||| ||||||||||||| |||| |||||||    
T  35608082 ttaggcaaaatgaaaaacttaaaagatctttagatgcatttaacctttaaaaaa 35608029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 48651443 - 48651484
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||||||||||||||| ||| ||||||||||||| |||||    
T  48651443 aaaaacgaaaaacttaaaagatttttagatgcatttcaccta 48651484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 51562352 - 51562397
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||||||||  |  ||||||||||||||||||    
T  51562352 ttaggaaaaacgaaaaacttaaagaacttttagatgcatttgacct 51562397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 19228927 - 19228887
Alignment:
Q  6 gaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    ||||||| ||||||||||| || ||||||||||||||||||    
T  19228927 gaaaaacaaaaaacttaaaggacatttagatgcatttgacc 19228887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 21890365 - 21890405
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  21890365 aaaaacgaaaaacttaaaggacttttagatgcatttgacct 21890405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 37248146 - 37248190
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    |||| |||||||||||||||||| || ||||||||| ||||||||    
T  37248146 ttagaaaaaacgaaaaacttaaaagacatttagatgtatttgacc 37248190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 38446334 - 38446294
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  38446334 aaaaacgaaaaacttaaaggacctttagatgcatttgacct 38446294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 44152557 - 44152517
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  44152557 aaaaacgaaaaacttaaaggacctttagatgcatttgacct 44152517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 50287425 - 50287381
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacctat 49  Q
    ||||||| |||||||||||| ||  ||||||||||||||||||||    
T  50287425 ggaaaaatgaaaaacttaaaggacctttagatgcatttgacctat 50287381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 53196206 - 53196246
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgac 45  Q
    |||||||||||||||||||| ||  ||||||||||||||||    
T  53196206 ggaaaaacgaaaaacttaaaggacctttagatgcatttgac 53196246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 24430851 - 24430902
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacctataaaa 53  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||||||||||    
T  24430851 ttaggaaaaacgaaaaacttaaaggacctttagatgcatttgacctataaaa 24430902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 38107292 - 38107337
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacctata 50  Q
    ||||||| |||||||||||| || ||||||||||||||||||||||    
T  38107292 ggaaaaatgaaaaacttaaaggacatttagatgcatttgacctata 38107337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 260172 - 260219
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacctataaaaa 54  Q
    ||||| |||||||||||| || |||||||||||||||||||| |||||    
T  260172 aaaaatgaaaaacttaaaggacatttagatgcatttgacctaaaaaaa 260219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 440699 - 440656
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||||||||||||||||| ||| |||||||| ||||||||||    
T  440699 ggaaaaacgaaaaacttaaaggatctttagatgtatttgaccta 440656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 655749 - 655702
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacctataaaaa 54  Q
    ||||| |||||||||||| || |||||||||||||||||||| |||||    
T  655749 aaaaatgaaaaacttaaaggacatttagatgcatttgacctaaaaaaa 655702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 841484 - 841437
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacctataaaaa 54  Q
    ||||| |||||||||||| || |||||||||||||||||||| |||||    
T  841484 aaaaatgaaaaacttaaaggacatttagatgcatttgacctaaaaaaa 841437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 43468951 - 43468908
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||||||||||||||||| ||  |||||||||||||||||||    
T  43468951 ggaaaaacgaaaaacttaaaggacctttagatgcatttgaccta 43468908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 6016375 - 6016417
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttga 44  Q
    ||||||||||||||||||||||| ||  |||||||||||||||    
T  6016375 ttaggaaaaacgaaaaacttaaaggacctttagatgcatttga 6016417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 9884715 - 9884673
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||||| ||  ||||||||||||||||||    
T  9884715 ggaaaaacgaaaaacttaaaggacctttagatgcatttgacct 9884673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 1293345 - 1293304
Alignment:
Q  6 gaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||||  | |||||||||||||||||||    
T  1293345 gaaaaacgaaaaacttaaagaacatttagatgcatttgacct 1293304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 4649007 - 4648966
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||||||||||||||| ||  |||||||||||||||||||    
T  4649007 aaaaacgaaaaacttaaaggacttttagatgcatttgaccta 4648966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 22684241 - 22684282
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    |||||||||||||||||||| ||  |||||||||||||||||    
T  22684241 ggaaaaacgaaaaacttaaaggacctttagatgcatttgacc 22684282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 33651698 - 33651657
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||||||||||||||| ||  |||||||||||||||||||    
T  33651698 aaaaacgaaaaacttaaaggacttttagatgcatttgaccta 33651657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 33652031 - 33652076
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||| |||||||||||| ||  ||||||||||||||||||    
T  33652031 ttaggaaaaatgaaaaacttaaaggacctttagatgcatttgacct 33652076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 2533469 - 2533509
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    ||||| |||||||||||||||  ||||||||||||||||||    
T  2533469 aaaaatgaaaaacttaaatgagttttagatgcatttgacct 2533509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 7434772 - 7434732
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||| ||||||||||| || |||||||||||||||||||    
T  7434772 aaaaacaaaaaacttaaaagacatttagatgcatttgacct 7434732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 24430517 - 24430477
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  24430517 aaaaacgaaaaacttaaaggacctttagatgcatttgacct 24430477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 45723774 - 45723820
Alignment:
Q  6 gaaaaacgaaaaacttaaatgatatttagatgcatttgacctataaa 52  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||    
T  45723774 gaaaaacgaaaaacttaaatgatctttaaatgcatttgacctataaa 45723820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 1469775 - 1469817
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||||| || |||||||||||||||||||    
T  1469775 ggaaaaacgaaaaacttaaaggacatttagatgcatttgacct 1469817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 47281410 - 47281456
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacctataaaa 53  Q
    |||||||||||||||||| ||  ||||||||||||||||||||||||    
T  47281410 aaaaacgaaaaacttaaaggacctttagatgcatttgacctataaaa 47281456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 11476835 - 11476880
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||||    
T  11476835 ttaggaaaaacgaaaaacttaaaggacctttagatgcatttgacct 11476880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 42888763 - 42888722
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    |||||||||||||||||||||||  |||||||||||||||||    
T  42888763 ggaaaaacgaaaaacttaaatgacctttagatgcatttgacc 42888722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 43968541 - 43968585
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacctat 49  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||    
T  43968541 ggaaaaacgaaaaacttaaaggacctttagatgcatttgacctat 43968585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 39033919 - 39033876
Alignment:
Q  6 gaaaaacgaaaaacttaaatgatatttagatgcatttgacctat 49  Q
    ||||||||||||||||||| ||  ||||||||||||||||||||    
T  39033919 gaaaaacgaaaaacttaaaggacctttagatgcatttgacctat 39033876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 27364621 - 27364663
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    ||||||||||||| |||||| || |||||||||||||||||||    
T  27364621 ggaaaaacgaaaaccttaaaggacatttagatgcatttgacct 27364663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 47271841 - 47271799
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    ||||||| |||||||||||| || |||||||||||||||||||    
T  47271841 ggaaaaatgaaaaacttaaaggacatttagatgcatttgacct 47271799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 47272174 - 47272216
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    ||||||| |||||||||||| || |||||||||||||||||||    
T  47272174 ggaaaaatgaaaaacttaaaggacatttagatgcatttgacct 47272216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 4923366 - 4923411
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    ||||||||||||||||||||||| ||| ||||||| ||||| ||||    
T  4923366 ttaggaaaaacgaaaaacttaaaggatctttagatacatttaacct 4923411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 40520773 - 40520724
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacctataaaaaat 56  Q
    |||||||||||| ||||| ||| |||||||| ||||||||| ||||||||    
T  40520773 aaaaacgaaaaatttaaaagatctttagatgtatttgacctttaaaaaat 40520724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 40851171 - 40851130
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    |||||||||||||||||||| ||  |||||||||||||||||    
T  40851171 ggaaaaacgaaaaacttaaaggacctttagatgcatttgacc 40851130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 48628998 - 48629043
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacctata 50  Q
    ||||||| |||||||||||| ||  |||||||||||||||||||||    
T  48628998 ggaaaaatgaaaaacttaaaggacctttagatgcatttgacctata 48629043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 3797488 - 3797448
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  3797488 aaaaacgaaaaacttaaaggacttttagatgcatttgacct 3797448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 23842192 - 23842152
Alignment:
Q  6 gaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    ||||||||||||||||||| ||  |||||||||||||||||    
T  23842192 gaaaaacgaaaaacttaaaggacttttagatgcatttgacc 23842152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 47119877 - 47119837
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  47119877 aaaaacgaaaaacttaaaggacctttagatgcatttgacct 47119837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 36444697 - 36444743
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacctataa 51  Q
    |||||||||||||||||||| || |||||||||||||||||||||||    
T  36444697 ggaaaaacgaaaaacttaaaggacatttagatgcatttgacctataa 36444743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 22298711 - 22298753
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||||| || |||||||||||||||||||    
T  22298711 ggaaaaacgaaaaacttaaaggacatttagatgcatttgacct 22298753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 48551710 - 48551668
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacctat 49  Q
    |||||||||||||||||| || |||||||||||||||||||||    
T  48551710 aaaaacgaaaaacttaaaggacatttagatgcatttgacctat 48551668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 39699903 - 39699863
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  39699903 aaaaacgaaaaacttaaatgat-tttagatgcatttgaccta 39699863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 26017309 - 26017261
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacctataaaaaa 55  Q
    |||||||||||||||||| ||  ||||||||||||||||||| ||||||    
T  26017309 aaaaacgaaaaacttaaaggacctttagatgcatttgacctaaaaaaaa 26017261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 28264531 - 28264483
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacctataaaa 53  Q
    |||||||||||||||||||| ||  |||||||||||||||||| |||||    
T  28264531 ggaaaaacgaaaaacttaaaggacctttagatgcatttgacctttaaaa 28264483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 17847406 - 17847449
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||||||||||||||||| ||  |||||||||||||||||||    
T  17847406 ggaaaaacgaaaaacttaaaggacctttagatgcatttgaccta 17847449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 19169048 - 19169091
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||||||||||||||||| ||  |||||||||||||||||||    
T  19169048 ggaaaaacgaaaaacttaaaggacctttagatgcatttgaccta 19169091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 28160237 - 28160280
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||||||||||||||||| ||  |||||||||||||||||||    
T  28160237 ggaaaaacgaaaaacttaaaggacctttagatgcatttgaccta 28160280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 30141356 - 30141403
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacctat 49  Q
    |||| |||||||||||||||||| ||  ||||||||||||||||||||    
T  30141356 ttagaaaaaacgaaaaacttaaaggacctttagatgcatttgacctat 30141403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 31208607 - 31208560
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacctataaa 52  Q
    |||||||||||||||||||| ||  ||||||||||||||||| |||||    
T  31208607 ggaaaaacgaaaaacttaaaggacctttagatgcatttgaccaataaa 31208560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 33693618 - 33693657
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    |||||||||||||||||| || ||||||||||||||||||    
T  33693618 aaaaacgaaaaacttaaaggacatttagatgcatttgacc 33693657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 5227585 - 5227627
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacctat 49  Q
    |||||||||||||||||| ||  ||||||||||||||||||||    
T  5227585 aaaaacgaaaaacttaaaggacctttagatgcatttgacctat 5227627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 33807729 - 33807687
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    ||||||| |||||||||||||||  ||||||||||||||||||    
T  33807729 ggaaaaatgaaaaacttaaatgacctttagatgcatttgacct 33807687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 36834997 - 36834955
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttga 44  Q
    ||||||||||||||||||||||| | | |||||||||||||||    
T  36834997 ttaggaaaaacgaaaaacttaaagggtgtttagatgcatttga 36834955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 48552001 - 48552047
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacctataaaa 53  Q
    ||||||||||||||||||  |  ||||||||||||||||||||||||    
T  48552001 aaaaacgaaaaacttaaagaacctttagatgcatttgacctataaaa 48552047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 48707987 - 48708025
Alignment:
Q  6 gaaaaacgaaaaacttaaatgatatttagatgcatttga 44  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  48707987 gaaaaacgaaaaacttaaaggatctttagatgcatttga 48708025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 2055142 - 2055101
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||||||||||||||| ||  |||||||||||||||||||    
T  2055142 aaaaacgaaaaacttaaaggacctttagatgcatttgaccta 2055101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 19496430 - 19496471
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||||||||||||||| ||  |||||||||||||||||||    
T  19496430 aaaaacgaaaaacttaaaggacctttagatgcatttgaccta 19496471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 22298376 - 22298335
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||||||||||||||| ||  |||||||||||||||||||    
T  22298376 aaaaacgaaaaacttaaaggacctttagatgcatttgaccta 22298335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 25734505 - 25734546
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    |||||||||||||||||||| ||  |||||||||||||||||    
T  25734505 ggaaaaacgaaaaacttaaaggacctttagatgcatttgacc 25734546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 28159900 - 28159855
Alignment:
Q  6 gaaaaacgaaaaacttaaatgatatttagatgcatttgacctataa 51  Q
    ||||||||||||||||||| ||  ||||||||||||||| ||||||    
T  28159900 gaaaaacgaaaaacttaaaggacctttagatgcatttgatctataa 28159855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 28812235 - 28812194
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    |||||||||||||||||||| ||  |||||||||||||||||    
T  28812235 ggaaaaacgaaaaacttaaaggacctttagatgcatttgacc 28812194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 31973784 - 31973825
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    |||||||||||||| ||||| || ||||||||||||||||||    
T  31973784 ggaaaaacgaaaaatttaaaggacatttagatgcatttgacc 31973825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 33693284 - 33693235
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacctataa 51  Q
    |||||||||||||||||| ||||  || ||||||||||||||| ||||||    
T  33693284 ttaggaaaaacgaaaaacgtaaagaatctttagatgcatttgatctataa 33693235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 49118804 - 49118853
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacctataaaaa 54  Q
    ||||||| |||||||||||| || |||||||| ||||||||||| |||||    
T  49118804 ggaaaaatgaaaaacttaaacgacatttagatacatttgacctaaaaaaa 49118853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 50276086 - 50276045
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    ||||||| |||||||||||| || ||||||||||||||||||    
T  50276086 ggaaaaatgaaaaacttaaaggacatttagatgcatttgacc 50276045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 50276419 - 50276460
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||||||||||||||| ||  |||||||||||||||||||    
T  50276419 aaaaacgaaaaacttaaaggacctttagatgcatttgaccta 50276460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 51371355 - 51371400
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||| |||||||||||||||||| ||  ||||||||||||||||||    
T  51371355 ttagaaaaaacgaaaaacttaaaggacctttagatgcatttgacct 51371400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 20534397 - 20534433
Alignment:
Q  14 aaaaacttaaatgatatttagatgcatttgacctata 50  Q
    ||||||||||||||  |||||||||||||||||||||    
T  20534397 aaaaacttaaatgacctttagatgcatttgacctata 20534433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 23135261 - 23135305
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacctataa 51  Q
    ||||| |||||||||||| |  |||||||||||||||||||||||    
T  23135261 aaaaatgaaaaacttaaaggccatttagatgcatttgacctataa 23135305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 23553254 - 23553298
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    |||| |||||||||||||||||| ||  |||||||||||||||||    
T  23553254 ttagaaaaaacgaaaaacttaaaggacctttagatgcatttgacc 23553298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 28264836 - 28264880
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacctat 49  Q
    ||||||| |||||||||||| ||  ||||||||||||||||||||    
T  28264836 ggaaaaatgaaaaacttaaaggacctttagatgcatttgacctat 28264880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 36444628 - 36444588
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  36444628 aaaaacgaaaaacttaaaggacctttagatgcatttgacct 36444588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 43380714 - 43380672
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttga 44  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  43380714 ttaggaaaaacgaaaaacttaaatgacatttagatgcatttga 43380672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 38473909 - 38473953
Alignment:
Q  6 gaaaaacgaaaaacttaaatgatatttagatgcatttgacctata 50  Q
    ||||||||||||||||||| || ||||||||||||||||||||||    
T  38473909 gaaaaacgaaaaacttaaaggacatttagatgcatttgacctata 38473953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 45670432 - 45670390
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacctat 49  Q
    |||||||||||||||||| ||| ||||||||||||||||||||    
T  45670432 aaaaacgaaaaacttaaaggatctttagatgcatttgacctat 45670390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 52146881 - 52146840
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    |||||||||||||||||||| || ||||||||||||||||||    
T  52146881 ggaaaaacgaaaaacttaaaggacatttagatgcatttgacc 52146840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 18917383 - 18917343
Alignment:
Q  6 gaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    ||||||||||||||||||| ||| |||||||||||||||||    
T  18917383 gaaaaacgaaaaacttaaaggatctttagatgcatttgacc 18917343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 33194619 - 33194576
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||||||||||||||||| ||| || ||||||||||||||||    
T  33194619 ggaaaaacgaaaaacttaaaggatcttcagatgcatttgaccta 33194576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 36157959 - 36158002
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||||||||||||||||| ||  |||||||||||||||||||    
T  36157959 ggaaaaacgaaaaacttaaaggacctttagatgcatttgaccta 36158002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 45670736 - 45670787
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacctataaaa 53  Q
    |||| |||||||||||||||||| ||  |||||||||||||| |||||||||    
T  45670736 ttagaaaaaacgaaaaacttaaaggacctttagatgcatttgtcctataaaa 45670787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 16505185 - 16505139
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacctataa 51  Q
    |||||||| ||||||||||| ||| ||||||||||||||||| ||||    
T  16505185 ggaaaaactaaaaacttaaaggatctttagatgcatttgaccaataa 16505139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 24036723 - 24036773
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacctataaaaaatg 57  Q
    ||||| |||||||||||| ||  |||||||||||||||||||||| |||||    
T  24036723 aaaaatgaaaaacttaaaggacttttagatgcatttgacctataacaaatg 24036773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 32373836 - 32373878
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacctat 49  Q
    |||||| ||||||||||| ||| ||||||||||||||||||||    
T  32373836 aaaaacaaaaaacttaaaggatctttagatgcatttgacctat 32373878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 34971261 - 34971303
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||||| ||  ||||||||||||||||||    
T  34971261 ggaaaaacgaaaaacttaaaggacctttagatgcatttgacct 34971303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 46051643 - 46051685
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||||| ||  ||||||||||||||||||    
T  46051643 ggaaaaacgaaaaacttaaaggacctttagatgcatttgacct 46051685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 49594910 - 49594868
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||||| ||  ||||||||||||||||||    
T  49594910 ggaaaaacgaaaaacttaaaggacctttagatgcatttgacct 49594868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 9878732 - 9878691
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    |||||||||||||||||||| || | ||||||||||||||||    
T  9878732 ggaaaaacgaaaaacttaaaggacagttagatgcatttgacc 9878691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 9962658 - 9962613
Alignment:
Q  9 aaacgaaaaacttaaatg-atatttagatgcatttgacctataaaa 53  Q
    |||||||||||||||| | | |||||||||||||||||||||||||    
T  9962658 aaacgaaaaacttaaaaggacatttagatgcatttgacctataaaa 9962613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 16508181 - 16508226
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacctata 50  Q
    |||||||| ||||||||||| ||  |||||||||||||||||||||    
T  16508181 ggaaaaactaaaaacttaaaggacctttagatgcatttgacctata 16508226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 18782371 - 18782412
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    |||||||||||||||||||| ||  |||||||||||||||||    
T  18782371 ggaaaaacgaaaaacttaaaggacttttagatgcatttgacc 18782412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 18892523 - 18892567
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacctataaa 52  Q
    ||||| |||||||||||| ||| |||||||||||||||||||||||    
T  18892523 aaaaatgaaaaacttaaa-gatctttagatgcatttgacctataaa 18892567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 19274418 - 19274377
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    |||||||||||||||||||| ||  |||||||||||||||||    
T  19274418 ggaaaaacgaaaaacttaaaggacctttagatgcatttgacc 19274377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 36781118 - 36781077
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||||||||||||||| ||  |||||||||||||||||||    
T  36781118 aaaaacgaaaaacttaaaagacctttagatgcatttgaccta 36781077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 41105875 - 41105834
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    |||||||||||||||||||| ||  |||||||||||||||||    
T  41105875 ggaaaaacgaaaaacttaaaggacctttagatgcatttgacc 41105834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 46051336 - 46051295
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||| ||||||||||| || ||||||||||||||||||||    
T  46051336 aaaaacaaaaaacttaaaggacatttagatgcatttgaccta 46051295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 49973800 - 49973751
Alignment:
Q  6 gaaaaacgaaaaacttaaatgatatttagatgcatttgacctataaaaaa 55  Q
    ||||||||||| ||||||| ||| |||||||| ||||||||| |||||||    
T  49973800 gaaaaacgaaatacttaaaagatctttagatgtatttgacctttaaaaaa 49973751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 23228477 - 23228521
Alignment:
Q  6 gaaaaacgaaaaacttaaatgatatttagatgcatttgacctata 50  Q
    |||||||||||||| |||| || |||||||| |||||||||||||    
T  23228477 gaaaaacgaaaaacataaaggagatttagatacatttgacctata 23228521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 23767366 - 23767322
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    |||||||||| |||||||||||| ||| ||||||| |||||||||    
T  23767366 ttaggaaaaatgaaaaacttaaaggatctttagatacatttgacc 23767322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 37216754 - 37216714
Alignment:
Q  6 gaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    ||||||||||||||||||| ||  |||||||||||||||||    
T  37216754 gaaaaacgaaaaacttaaaggaactttagatgcatttgacc 37216714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 23671760 - 23671712
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacctataaaa 53  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||||||    
T  23671760 ggaaaaacgaaaaacttaaaggacctttagatgcatttgacctataaaa 23671712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 22066671 - 22066714
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgac 45  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||    
T  22066671 ttaggaaaaacgaaaaacttaaaagatctttagatgcatttgac 22066714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 41500775 - 41500817
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||||||||  ||||||||||||||||||    
T  41500775 ggaaaaacgaaaaacttaaatgacctttagatgcatttgacct 41500817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 42629843 - 42629801
Alignment:
Q  6 gaaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    ||||||||||||||||||| ||| |||||||||||||||||||    
T  42629843 gaaaaacgaaaaacttaaaggatctttagatgcatttgaccta 42629801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 772228 - 772272
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacctata 50  Q
    |||||||||||||||||||| || ||||||||||||||||||||||    
T  772228 ggaaaaacgaaaaacttaaa-gacatttagatgcatttgacctata 772272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 27328449 - 27328400
Alignment:
Q  2 ttaggaaaaacgaaaaa-cttaaatgatatttagatgcatttgacctata 50  Q
    ||||||||||||||||| |||||| || ||||||||||||||||||||||    
T  27328449 ttaggaaaaacgaaaaaacttaaaggacatttagatgcatttgacctata 27328400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 9276764 - 9276808
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    |||||||||| |||||||||||||||  |||||||||||||||||    
T  9276764 ttaggaaaaatgaaaaacttaaatgacctttagatgcatttgacc 9276808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 23673155 - 23673199
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacctat 49  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||    
T  23673155 ggaaaaacgaaaaacttaaaggacttttagatgcatttgacctat 23673199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 37838487 - 37838535
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacctata 50  Q
    |||||||||| |||||||||||| ||  |||||||||||||||||||||    
T  37838487 ttaggaaaaatgaaaaacttaaaggacctttagatgcatttgacctata 37838535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 19915958 - 19915915
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgac 45  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||    
T  19915958 ttaggaaaaacgaaaaacttaaaggacttttagatgcatttgac 19915915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 920881 - 920839
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||||| ||  ||||||||||||||||||    
T  920881 ggaaaaacgaaaaacttaaaggacctttagatgcatttgacct 920839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 2094664 - 2094714
Alignment:
Q  6 gaaaaacgaaaaacttaaatgatatttagatgcatttgacctataaaaaat 56  Q
    ||||||||||||||||||| ||  |||| ||||||||||||||| ||||||    
T  2094664 gaaaaacgaaaaacttaaaggacctttaaatgcatttgacctattaaaaat 2094714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 3430576 - 3430526
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacctataaa 52  Q
    |||||||||||||||||||||||  |  |||||||||||||||||| ||||    
T  3430576 ttaggaaaaacgaaaaacttaaagaacctttagatgcatttgacctttaaa 3430526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 7379157 - 7379195
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgac 45  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  7379157 aaaaacgaaaaacttaaaagatctttagatgcatttgac 7379195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 31214099 - 31214141
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||||| ||  ||||||||||||||||||    
T  31214099 ggaaaaacgaaaaacttaaaagacctttagatgcatttgacct 31214141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 36444511 - 36444557
Alignment:
Q  6 gaaaaacgaaaaacttaaatgatatttagatgcatttgacctataaa 52  Q
    ||||||||||||||||||| || ||||| ||||||||||||| ||||    
T  36444511 gaaaaacgaaaaacttaaaggacatttaaatgcatttgacctttaaa 36444557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 42630155 - 42630197
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||||| ||  ||||||||||||||||||    
T  42630155 ggaaaaacgaaaaacttaaaagacctttagatgcatttgacct 42630197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 12760033 - 12760074
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||||||||||||||||||  ||||||| |||||||||||    
T  12760033 aaaaacgaaaaacttaaatgacctttagatacatttgaccta 12760074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 37654296 - 37654337
Alignment:
Q  14 aaaaacttaaatgatatttagatgcatttgacctataaaaaa 55  Q
    ||||||||||| ||  ||||||||||||||||||||||||||    
T  37654296 aaaaacttaaaggacctttagatgcatttgacctataaaaaa 37654337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 38751242 - 38751283
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||||||||||||||| |||  ||||||||||||||||||    
T  38751242 aaaaacgaaaaacttaaaggatcattagatgcatttgaccta 38751283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 2456203 - 2456247
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacctat 49  Q
    ||||||| |||||||||||| ||  ||||||||||||||||||||    
T  2456203 ggaaaaatgaaaaacttaaaggacttttagatgcatttgacctat 2456247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 19511484 - 19511440
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    |||| ||||||||||||||||||  | ||||||||||||||||||    
T  19511484 ttagaaaaaacgaaaaacttaaaaaagatttagatgcatttgacc 19511440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 27328779 - 27328823
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacctataa 51  Q
    ||||| |||||||||||| ||  ||||||||||||||||||||||    
T  27328779 aaaaatgaaaaacttaaaggacctttagatgcatttgacctataa 27328823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 33865549 - 33865589
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgac 45  Q
    |||||||||||||||||||| ||  ||||||||||||||||    
T  33865549 ggaaaaacgaaaaacttaaaagacctttagatgcatttgac 33865589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 36211242 - 36211282
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  36211242 aaaaacgaaaaacttaaaggacctttagatgcatttgacct 36211282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 37838137 - 37838093
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacctataa 51  Q
    |||||||||||||||||| ||  ||||||| ||||||||||||||    
T  37838137 aaaaacgaaaaacttaaaggacctttagatacatttgacctataa 37838093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 14536 - 14485
Alignment:
Q  6 gaaaaacgaaaaacttaaatgatatttagatgcatttgacctataaaaaatg 57  Q
    ||||||||||||||||||| ||  |||||||||||||||||||||| |||||    
T  14536 gaaaaacgaaaaacttaaaggacctttagatgcatttgacctataacaaatg 14485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 39125984 - 39125942
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||||| ||| ||||||||||||||||||    
T  39125984 ggaaaaacgaaaaacttaaaggatctttagatgcatttgacct 39125942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 30298033 - 30298074
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  30298033 aaaaacgaaaaacttaaatgacttttagatgcatttgaccta 30298074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 33003231 - 33003276
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||||    
T  33003231 ttaggaaaaacgaaaaacttaaaggacctttagatgcatttgacct 33003276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 33760752 - 33760797
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacctata 50  Q
    |||||||||||||||||||| ||  |||||||||||||||||||||    
T  33760752 ggaaaaacgaaaaacttaaaggacttttagatgcatttgacctata 33760797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 3352280 - 3352327
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacctat 49  Q
    ||||||||||||||||| ||||| ||  ||||||||||||||||||||    
T  3352280 ttaggaaaaacgaaaaatttaaaggacctttagatgcatttgacctat 3352327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 20408726 - 20408769
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||||||||||||||||| ||  |||||||||||||||||||    
T  20408726 ggaaaaacgaaaaacttaaaggacctttagatgcatttgaccta 20408769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 6331234 - 6331192
Alignment:
Q  8 aaaacgaaaaacttaaatgatatttagatgcatttgacctata 50  Q
    |||| |||||||||||| || ||||||||||||||||||||||    
T  6331234 aaaatgaaaaacttaaaggacatttagatgcatttgacctata 6331192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 11001010 - 11001052
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||||| ||  ||||||||||||||||||    
T  11001010 ggaaaaacgaaaaacttaaaggacctttagatgcatttgacct 11001052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 11935334 - 11935292
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacctat 49  Q
    |||||||||||||||||| ||  ||||||||||||||||||||    
T  11935334 aaaaacgaaaaacttaaaggacctttagatgcatttgacctat 11935292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 17002440 - 17002482
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacctat 49  Q
    |||||||||||||||||| ||  ||||||||||||||||||||    
T  17002440 aaaaacgaaaaacttaaaggacctttagatgcatttgacctat 17002482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 19661913 - 19661955
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||||| ||  ||||||||||||||||||    
T  19661913 ggaaaaacgaaaaacttaaacgacctttagatgcatttgacct 19661955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 30863141 - 30863095
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacctataa 51  Q
    |||||||||||||||||||| ||  ||||||||||||||||| ||||    
T  30863141 ggaaaaacgaaaaacttaaaagacctttagatgcatttgaccaataa 30863095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 31710475 - 31710525
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacctataaaaaa 55  Q
    |||||||| ||||||||||| ||| ||||||||||||||| ||| ||||||    
T  31710475 ggaaaaactaaaaacttaaaggatctttagatgcatttgatctaaaaaaaa 31710525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 35861489 - 35861531
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacctat 49  Q
    |||||||||||||||||| ||  ||||||||||||||||||||    
T  35861489 aaaaacgaaaaacttaaaggacctttagatgcatttgacctat 35861531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 445129 - 445170
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||||||||||||||| ||  |||||||||||||||||||    
T  445129 aaaaacgaaaaacttaaaggaactttagatgcatttgaccta 445170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 6600420 - 6600461
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||||||||||||||| ||  |||||||||||||||||||    
T  6600420 aaaaacgaaaaacttaaaggacctttagatgcatttgaccta 6600461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 20079536 - 20079581
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    ||||||||||||||||||||||| ||  |||||||| |||||||||    
T  20079536 ttaggaaaaacgaaaaacttaaaggacctttagatgtatttgacct 20079581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 26035312 - 26035271
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgaccta 48  Q
    |||||||||||||||||| ||  |||||||||||||||||||    
T  26035312 aaaaacgaaaaacttaaaggacctttagatgcatttgaccta 26035271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 39824749 - 39824789
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    |||||||||||||||||||| || ||||||||||||||||||    
T  39824749 ggaaaaacgaaaaacttaaa-gacatttagatgcatttgacc 39824789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 6332971 - 6333011
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    ||||| |||||||||||| || |||||||||||||||||||    
T  6332971 aaaaatgaaaaacttaaaggacatttagatgcatttgacct 6333011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 8215759 - 8215715
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacctat 49  Q
    ||||||| |||||||||||| ||  ||||||||||||||||||||    
T  8215759 ggaaaaatgaaaaacttaaaggacctttagatgcatttgacctat 8215715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 16752007 - 16751959
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacctata 50  Q
    |||| |||||||||||| ||||| ||  |||||||||||||||||||||    
T  16752007 ttagaaaaaacgaaaaatttaaaggacctttagatgcatttgacctata 16751959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 26593564 - 26593604
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  26593564 aaaaacgaaaaacttaaaggacctttagatgcatttgacct 26593604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 27116376 - 27116420
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacctat 49  Q
    |||||||| ||||||||||| ||  ||||||||||||||||||||    
T  27116376 ggaaaaacaaaaaacttaaaggacttttagatgcatttgacctat 27116420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 28078689 - 28078729
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  28078689 aaaaacgaaaaacttaaaggacttttagatgcatttgacct 28078729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 33002919 - 33002875
Alignment:
Q  6 gaaaaacgaaaaacttaaatgatatttagatgcatttgacctata 50  Q
    ||||||| ||||||||||| ||| |||||||||||||||| ||||    
T  33002919 gaaaaacaaaaaacttaaaggatctttagatgcatttgacatata 33002875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 41282201 - 41282153
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacctataaaa 53  Q
    |||||||| ||||||||||| ||  |||||||||||||||||| |||||    
T  41282201 ggaaaaacaaaaaacttaaaggacgtttagatgcatttgacctttaaaa 41282153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 17428223 - 17428174
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacctataa 51  Q
    |||| ||||||||||||||||||  || ||||||||||||||||||||||    
T  17428223 ttagaaaaaacgaaaaacttaaagaatctttagatgcatttgacctataa 17428174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 29050134 - 29050089
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||||    
T  29050134 ttaggaaaaacgaaaaacttaaaggacttttagatgcatttgacct 29050089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 35224173 - 35224217
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacctat 49  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||    
T  35224173 ggaaaaacgaaaaacttaaaggacttttagatgcatttgacctat 35224217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 3408077 - 3408035
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||||| ||  ||||||||||||||||||    
T  3408077 ggaaaaacgaaaaacttaaaggacttttagatgcatttgacct 3408035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 26393291 - 26393333
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||||| ||  ||||||||||||||||||    
T  26393291 ggaaaaacgaaaaacttaaaggacctttagatgcatttgacct 26393333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 1077427 - 1077472
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    ||||||||||||||||||||||| ||  |||||| |||||||||||    
T  1077427 ttaggaaaaacgaaaaacttaaaggacctttagacgcatttgacct 1077472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 17514975 - 17514934
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    ||||||||||||||||||||  || |||||||||||||||||    
T  17514975 ggaaaaacgaaaaacttaaagtatctttagatgcatttgacc 17514934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 30457506 - 30457547
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    |||||||||||||||||||| ||  |||||||||||||||||    
T  30457506 ggaaaaacgaaaaacttaaaggacctttagatgcatttgacc 30457547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 10256094 - 10256054
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||  || |||||||||||||||||||    
T  10256094 aaaaacgaaaaacttaagggacatttagatgcatttgacct 10256054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 25820500 - 25820456
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    |||||||||| || ||||||||| ||| |||||||||||||||||    
T  25820500 ttaggaaaaatgataaacttaaacgatctttagatgcatttgacc 25820456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 26230879 - 26230839
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  26230879 aaaaacgaaaaacttaaacgacttttagatgcatttgacct 26230839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 29050465 - 29050517
Alignment:
Q  5 ggaaaaacgaaaaacttaaatg-atatttagatgcatttgacctataaaaaat 56  Q
    |||||||||||||||||||| | |  ||||||||||||||||| |||||||||    
T  29050465 ggaaaaacgaaaaacttaaaaggacctttagatgcatttgaccaataaaaaat 29050517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 30378876 - 30378836
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgac 45  Q
    |||||||||||||||||||| ||  ||||||||||||||||    
T  30378876 ggaaaaacgaaaaacttaaaggacctttagatgcatttgac 30378836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 30379210 - 30379254
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacctat 49  Q
    |||||||||||||||||||| ||  ||||||| ||||||||||||    
T  30379210 ggaaaaacgaaaaacttaaaggacctttagatacatttgacctat 30379254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 101285 - 101333
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacctataaaaaa 55  Q
    |||||||||||||||||||||  ||||||||||||||||| | ||||||    
T  101285 aaaaacgaaaaacttaaatgacctttagatgcatttgaccaaaaaaaaa 101333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 11224 - 11182
Alignment:
Q  5 ggaaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||||| ||  ||||||||||||||||||    
T  11224 ggaaaaacgaaaaacttaaaagacttttagatgcatttgacct 11182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0727 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0727
Description:

Target: scaffold0727; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 5375 - 5419
Alignment:
Q  2 ttaggaaaaacgaaaaacttaaatgatatttagatgcatttgacc 46  Q
    |||| |||||||||||||||||| ||  |||||||||||||||||    
T  5375 ttagaaaaaacgaaaaacttaaaggacctttagatgcatttgacc 5419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0416 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 6629 - 6589
Alignment:
Q  7 aaaaacgaaaaacttaaatgatatttagatgcatttgacct 47  Q
    |||||||||||||||||| || |||| ||||||||||||||    
T  6629 aaaaacgaaaaacttaaaggacatttggatgcatttgacct 6589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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