View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11981_low_10 (Length: 230)

Name: NF11981_low_10
Description: NF11981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11981_low_10
NF11981_low_10
[»] chr2 (3 HSPs)
chr2 (1-230)||(36424541-36424770)
chr2 (1-230)||(36421017-36421246)
chr2 (1-230)||(36427514-36427743)


Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 36424770 - 36424541
Alignment:
Q  1 ctcggctgaacgagggtgtgtgtgtggtggattgatggttccaggtgggtacattagagcagcatatgatacactttgtccatcaagagctggaaattct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36424770 ctcggctgaacgagggtgtgtgtgtggtggattgatggttccaggtgggtacattagagcagcatatgatacactttgtccatcaagagctggaaattct 36424671  T
Q  101 tttttgcttgctttcaatgccacgaaaaacgagggttgtatgtttggtacagtaagggcgcggaaaccggtgtatgtgaagaagttgccatcaacttggg 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36424670 tttttgcttgctttcaatgccacgaaaaatgagggttgtatgtttggtacagtaagggcgcggaaaccggtgtatgtgaagaagttgccatcaacttggg 36424571  T
Q  201 ttccatttggggctatgaagtcagtaagga 230  Q
    ||||||||||||||||||||||||||||||    
T  36424570 ttccatttggggctatgaagtcagtaagga 36424541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 36421246 - 36421017
Alignment:
Q  1 ctcggctgaacgagggtgtgtgtgtggtggattgatggttccaggtgggtacattagagcagcatatgatacactttgtccatcaagagctggaaattct 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36421246 ctcggctgaacgagggtgtgtatgtggtggattgatggttccaggtgggtacattagagcagcatatgatacactttgtccatcaagagctggaaattct 36421147  T
Q  101 tttttgcttgctttcaatgccacgaaaaacgagggttgtatgtttggtacagtaagggcgcggaaaccggtgtatgtgaagaagttgccatcaacttggg 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36421146 tttttgcttgctttcaatgccacgaaaaatgagggttgtatgtttggtacagtaagggcgcggaaaccggtgtatgtgaagaagttgccatcaacttggg 36421047  T
Q  201 ttccatttggggctatgaagtcagtaagga 230  Q
    ||||||||||||||||||||||||| ||||    
T  36421046 ttccatttggggctatgaagtcagtgagga 36421017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 36427743 - 36427514
Alignment:
Q  1 ctcggctgaacgagggtgtgtgtgtggtggattgatggttccaggtgggtacattagagcagcatatgatacactttgtccatcaagagctggaaattct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||| ||||||||||||||||||    
T  36427743 ctcggctgaacgagggtgtgtgtgtggtggattgatggttccaggtgggtatattagagcagcatatgcgacactttgtccgtcaagagctggaaattct 36427644  T
Q  101 tttttgcttgctttcaatgccacgaaaaacgagggttgtatgtttggtacagtaagggcgcggaaaccggtgtatgtgaagaagttgccatcaacttggg 200  Q
      ||||||||||||||| ||   ||||   ||||| ||||||||||||  |  ||| ||||||||||||||| |||||||||||||||||||||||||||    
T  36427643 gctttgcttgctttcaaggctttgaaagttgagggctgtatgtttggtggaagaagtgcgcggaaaccggtgaatgtgaagaagttgccatcaacttggg 36427544  T
Q  201 ttccatttggggctatgaagtcagtaagga 230  Q
    ||||| ||||||||||||| ||||| ||||    
T  36427543 ttccagttggggctatgaaatcagtgagga 36427514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University