View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11981_low_11 (Length: 212)

Name: NF11981_low_11
Description: NF11981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11981_low_11
NF11981_low_11
[»] chr8 (25 HSPs)
chr8 (131-196)||(10291703-10291768)
chr8 (19-81)||(12710651-12710713)
chr8 (19-81)||(10896220-10896282)
chr8 (19-81)||(18726622-18726684)
chr8 (19-81)||(42755873-42755935)
chr8 (34-81)||(1554357-1554404)
chr8 (19-78)||(3050015-3050074)
chr8 (34-81)||(25837932-25837979)
chr8 (19-82)||(26601940-26602003)
chr8 (22-81)||(38132740-38132799)
chr8 (22-80)||(7931248-7931306)
chr8 (23-81)||(26062154-26062212)
chr8 (19-81)||(32660936-32660998)
chr8 (35-81)||(35818427-35818473)
chr8 (19-77)||(37392553-37392611)
chr8 (35-81)||(38364103-38364149)
chr8 (22-79)||(40197081-40197138)
chr8 (34-81)||(16313510-16313557)
chr8 (19-81)||(41228717-41228779)
chr8 (34-79)||(18298133-18298178)
chr8 (29-81)||(33444629-33444681)
chr8 (34-81)||(5020493-5020540)
chr8 (43-81)||(8635664-8635702)
chr8 (19-81)||(21137135-21137197)
chr8 (25-81)||(25899644-25899700)
[»] chr5 (18 HSPs)
chr5 (19-80)||(6091721-6091782)
chr5 (22-81)||(555709-555768)
chr5 (22-81)||(32535946-32536005)
chr5 (19-81)||(4765563-4765625)
chr5 (19-81)||(12970533-12970595)
chr5 (19-81)||(14206824-14206886)
chr5 (19-81)||(19065508-19065570)
chr5 (35-81)||(22935915-22935961)
chr5 (35-81)||(28602577-28602623)
chr5 (19-82)||(11855657-11855720)
chr5 (22-81)||(36703883-36703942)
chr5 (19-81)||(18412215-18412277)
chr5 (35-81)||(29543018-29543064)
chr5 (136-187)||(5527533-5527584)
chr5 (22-81)||(42012182-42012241)
chr5 (34-63)||(8646412-8646441)
chr5 (29-81)||(6930660-6930712)
chr5 (34-78)||(8406915-8406959)
[»] chr1 (33 HSPs)
chr1 (16-81)||(5806294-5806359)
chr1 (19-81)||(6978777-6978839)
chr1 (19-81)||(9115844-9115906)
chr1 (19-81)||(25789770-25789832)
chr1 (19-81)||(39930464-39930526)
chr1 (23-81)||(51445083-51445141)
chr1 (21-80)||(38964683-38964742)
chr1 (19-81)||(2430503-2430565)
chr1 (19-81)||(3572568-3572630)
chr1 (19-81)||(9831873-9831935)
chr1 (19-81)||(36361789-36361851)
chr1 (19-81)||(47037464-47037526)
chr1 (19-81)||(49822920-49822982)
chr1 (22-81)||(35187466-35187525)
chr1 (19-81)||(1597345-1597407)
chr1 (19-81)||(2632859-2632921)
chr1 (19-81)||(6911500-6911562)
chr1 (35-81)||(39329631-39329677)
chr1 (35-81)||(46666731-46666777)
chr1 (21-81)||(32202334-32202394)
chr1 (34-81)||(52630795-52630842)
chr1 (19-81)||(5518507-5518569)
chr1 (35-81)||(8332037-8332083)
chr1 (35-81)||(20260089-20260135)
chr1 (33-81)||(1007768-1007816)
chr1 (34-81)||(12190180-12190227)
chr1 (38-81)||(14788749-14788792)
chr1 (19-81)||(32824929-32824991)
chr1 (19-81)||(48916025-48916087)
chr1 (19-77)||(4683381-4683439)
chr1 (19-81)||(13931887-13931949)
chr1 (29-82)||(31806758-31806811)
chr1 (29-81)||(29091683-29091735)
[»] chr4 (34 HSPs)
chr4 (21-81)||(39835310-39835370)
chr4 (19-81)||(40435910-40435972)
chr4 (19-81)||(48879335-48879397)
chr4 (22-81)||(6279924-6279983)
chr4 (19-81)||(23686797-23686859)
chr4 (19-81)||(35999696-35999758)
chr4 (19-81)||(45747799-45747861)
chr4 (28-80)||(34237424-34237476)
chr4 (22-81)||(39498838-39498897)
chr4 (22-81)||(39502177-39502236)
chr4 (19-81)||(13229992-13230054)
chr4 (19-81)||(18405237-18405299)
chr4 (19-81)||(25932451-25932513)
chr4 (35-81)||(27762902-27762948)
chr4 (19-81)||(41744223-41744285)
chr4 (19-81)||(43723274-43723336)
chr4 (19-81)||(47670372-47670434)
chr4 (19-81)||(48518894-48518956)
chr4 (35-81)||(55968003-55968049)
chr4 (34-81)||(25916038-25916085)
chr4 (34-81)||(27555435-27555482)
chr4 (34-81)||(34049600-34049647)
chr4 (34-81)||(39730296-39730343)
chr4 (19-78)||(45596278-45596337)
chr4 (35-81)||(936152-936198)
chr4 (34-80)||(27942768-27942814)
chr4 (35-81)||(41859050-41859096)
chr4 (22-69)||(8322258-8322305)
chr4 (34-81)||(18931778-18931825)
chr4 (19-81)||(32953533-32953595)
chr4 (35-81)||(42773974-42774020)
chr4 (34-81)||(30415927-30415974)
chr4 (22-79)||(10400810-10400867)
chr4 (34-81)||(50672911-50672955)
[»] chr3 (21 HSPs)
chr3 (19-82)||(48339759-48339822)
chr3 (23-81)||(1099208-1099266)
chr3 (19-81)||(11239123-11239185)
chr3 (19-81)||(44952314-44952376)
chr3 (19-81)||(20297799-20297861)
chr3 (19-81)||(24574581-24574643)
chr3 (19-81)||(26849028-26849090)
chr3 (19-81)||(40908271-40908333)
chr3 (34-81)||(9320451-9320498)
chr3 (19-81)||(6231504-6231566)
chr3 (35-81)||(8476311-8476357)
chr3 (19-81)||(28124439-28124501)
chr3 (19-80)||(33217917-33217978)
chr3 (22-81)||(43715311-43715370)
chr3 (19-81)||(31435926-31435988)
chr3 (35-81)||(47114860-47114906)
chr3 (35-81)||(20414468-20414514)
chr3 (22-77)||(40584609-40584664)
chr3 (35-65)||(31611004-31611034)
chr3 (21-74)||(1246912-1246965)
chr3 (29-81)||(45826792-45826844)
[»] chr7 (31 HSPs)
chr7 (19-81)||(11329999-11330061)
chr7 (19-81)||(27213858-27213920)
chr7 (19-81)||(39554189-39554251)
chr7 (19-81)||(43949251-43949313)
chr7 (19-81)||(45045632-45045694)
chr7 (19-79)||(25924642-25924702)
chr7 (22-81)||(28904189-28904248)
chr7 (19-81)||(27419227-27419289)
chr7 (19-81)||(33378848-33378910)
chr7 (19-81)||(48314128-48314190)
chr7 (19-81)||(48341368-48341430)
chr7 (34-81)||(9814221-9814268)
chr7 (34-81)||(48160594-48160641)
chr7 (35-81)||(8419592-8419638)
chr7 (19-81)||(9946993-9947055)
chr7 (35-81)||(27248315-27248361)
chr7 (19-81)||(38544200-38544262)
chr7 (19-81)||(40212895-40212957)
chr7 (19-81)||(41632367-41632429)
chr7 (19-81)||(34930468-34930531)
chr7 (19-81)||(16825357-16825419)
chr7 (35-81)||(35488192-35488238)
chr7 (34-80)||(38396370-38396416)
chr7 (35-81)||(45265051-45265097)
chr7 (34-81)||(44566066-44566113)
chr7 (34-81)||(45723228-45723275)
chr7 (34-80)||(45448963-45449009)
chr7 (20-81)||(25098076-25098137)
chr7 (28-81)||(44820269-44820322)
chr7 (29-81)||(11000719-11000771)
chr7 (29-81)||(41684025-41684077)
[»] chr6 (8 HSPs)
chr6 (19-81)||(8029339-8029401)
chr6 (19-81)||(7053573-7053635)
chr6 (34-81)||(2657721-2657768)
chr6 (35-81)||(1317040-1317086)
chr6 (19-81)||(18897927-18897989)
chr6 (34-81)||(14171034-14171081)
chr6 (34-77)||(16968946-16968989)
chr6 (48-81)||(10246225-10246258)
[»] chr2 (33 HSPs)
chr2 (19-81)||(9733849-9733911)
chr2 (22-81)||(34356703-34356762)
chr2 (22-81)||(37192531-37192590)
chr2 (19-81)||(346348-346410)
chr2 (19-81)||(39995134-39995196)
chr2 (22-79)||(26310278-26310335)
chr2 (34-81)||(21737403-21737450)
chr2 (19-81)||(6171797-6171859)
chr2 (19-81)||(11071611-11071673)
chr2 (19-81)||(41750535-41750597)
chr2 (35-81)||(42674664-42674710)
chr2 (19-79)||(5770115-5770175)
chr2 (29-81)||(40950862-40950914)
chr2 (34-81)||(2050887-2050934)
chr2 (34-81)||(37533973-37534020)
chr2 (35-81)||(14777501-14777547)
chr2 (34-80)||(28311701-28311747)
chr2 (34-80)||(37233450-37233496)
chr2 (19-81)||(41729133-41729195)
chr2 (34-81)||(20426486-20426533)
chr2 (34-80)||(638614-638660)
chr2 (35-81)||(2521697-2521743)
chr2 (35-81)||(4559581-4559627)
chr2 (35-81)||(17966005-17966051)
chr2 (19-81)||(18713660-18713722)
chr2 (19-80)||(14832816-14832877)
chr2 (29-81)||(1988327-1988379)
chr2 (34-82)||(13760966-13761014)
chr2 (34-81)||(27357966-27358013)
chr2 (38-81)||(40570045-40570088)
chr2 (19-81)||(45409256-45409318)
chr2 (29-69)||(14253538-14253578)
chr2 (29-81)||(14403236-14403288)
[»] scaffold0006 (1 HSPs)
scaffold0006 (19-81)||(201931-201993)
[»] scaffold0189 (1 HSPs)
scaffold0189 (19-79)||(28957-29017)


Alignment Details
Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 10291703 - 10291768
Alignment:
Q  131 atctaccgaacagcggtggcggaacgagataacgacggcggagattggaaggtgaaacgaaattgt 196  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  10291703 atctaccgaacagcggtggcgcggcgagataacgacggcggagattggaaggtgaaacgaaattgt 10291768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 12710651 - 12710713
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  12710651 aggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 12710713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 10896282 - 10896220
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| |||||||||||||| ||||||||||||||||||||| |||||||||||    
T  10896282 aggcatatacatttctatcattttattcctgggaatcaacaattataacttgaaacaaacaca 10896220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 18726684 - 18726622
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||||||| |||||||||||    
T  18726684 aggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 18726622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 42755873 - 42755935
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| ||||||||||||||| |||||||||||||||||||| |||||||||||    
T  42755873 aggcatatacatttctatcattttattcccaggaatcaacaattataacttgaaacaaacaca 42755935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 1554404 - 1554357
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  1554404 tatcattttattcccgggaatcaacaattataacttgaaacaaacaca 1554357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 3050015 - 3050074
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaac 78  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||||||| ||||||||    
T  3050015 aggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaac 3050074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 25837932 - 25837979
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  25837932 tatcattttattcccgggaatcaacaattataacttgaaacaaacaca 25837979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 26602003 - 26601940
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacacat 82  Q
    |||||||| ||||  ||||||||||||||||||||||||||||||||| || ||||||||||||    
T  26602003 aggcatatacattcctatcattttattcccgggaatcaacaattataatttgaaacaaacacat 26601940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 38132799 - 38132740
Alignment:
Q  22 catatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||| ||||| |||||||||||||||| ||||||||||||||||||| |||||||||||    
T  38132799 catatacatttctatcattttattcccgagaatcaacaattataacttgaaacaaacaca 38132740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 7931248 - 7931306
Alignment:
Q  22 catatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacac 80  Q
    ||||| ||||| ||||||||||||||| |||||||||||||||||||| ||||||||||    
T  7931248 catatacatttctatcattttattcccaggaatcaacaattataacttgaaacaaacac 7931306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 26062154 - 26062212
Alignment:
Q  23 atatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||| ||||| |||||||||||||||| ||||||||||||||||||| |||||||||||    
T  26062154 atatacatttctatcattttattcccgagaatcaacaattataacttgaaacaaacaca 26062212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 32660998 - 32660936
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  ||||||||||||||| |||||||||||||||||||| |||||||||||    
T  32660998 aggcatatacattcctatcattttattcccaggaatcaacaattataacttgaaacaaacaca 32660936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 35818473 - 35818427
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  35818473 atcattttattcccgggaatcaacaattataacttgaaacaaacaca 35818427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 37392611 - 37392553
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaa 77  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||||||| |||||||    
T  37392611 aggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaa 37392553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 38364103 - 38364149
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  38364103 atcattttattcccgggaatcaacaattataacttgaaacaaacaca 38364149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 40197138 - 40197081
Alignment:
Q  22 catatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaaca 79  Q
    ||||| ||||| |||||||||||| ||||||||||||||||||||||| |||||||||    
T  40197138 catatacatttctatcattttatttccgggaatcaacaattataacttgaaacaaaca 40197081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 16313557 - 16313510
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||    
T  16313557 tatcattttattcccggaaatcaacaattataacttgaaacaaacaca 16313510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 41228779 - 41228717
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  || |||||||||||||||||| |||||||||||||| |||||||||||    
T  41228779 aggcatatacattcctaccattttattcccgggaattaacaattataacttgaaacaaacaca 41228717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 18298133 - 18298178
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaaca 79  Q
    |||||||||||||||| ||||||| ||||||||||| |||||||||    
T  18298133 tatcattttattcccgagaatcaaaaattataacttgaaacaaaca 18298178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 33444681 - 33444629
Alignment:
Q  29 atttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||| ||||||||||||| | ||||||||||| |||||||| |||||||||||    
T  33444681 atttttatcattttattctcaggaatcaacaaatataacttgaaacaaacaca 33444629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 5020540 - 5020493
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||||||  |||||||||| |||||||| |||||||||||    
T  5020540 tatcattttattcccatgaatcaacaaatataacttgaaacaaacaca 5020493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 8635664 - 8635702
Alignment:
Q  43 attcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  8635664 attcctgggaatcaacaattataacttgaaacaaacaca 8635702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 21137197 - 21137135
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||  |||| ||| ||||||||| | ||||||||||| |||||||| |||||||||||    
T  21137197 aggcatatatatttctattattttattctcaggaatcaacaaatataacttcaaacaaacaca 21137135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 25899644 - 25899700
Alignment:
Q  25 atgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||| ||||||||||| |||||| |||| ||||| || |||||||||||    
T  25899644 atgcatttttatgattttattcccaggaatctacaaatataatttgaaacaaacaca 25899700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 3e-22; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 6091721 - 6091782
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacac 80  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6091721 aggcatatacatttatatcattttattcccgggaatcaacaattataacttgaaacaaacac 6091782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 555768 - 555709
Alignment:
Q  22 catatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  555768 catatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 555709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 32535946 - 32536005
Alignment:
Q  22 catatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  32535946 catatacatttctatcattttattcctgggaatcaacaattataacttaaaacaaacaca 32536005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 4765625 - 4765563
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||||||| |||||||||||    
T  4765625 aggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 4765563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 12970595 - 12970533
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||||||| |||||||||||    
T  12970595 aggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 12970533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 14206886 - 14206824
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| ||||||||||||||||| |||||||||||||||||| |||||||||||    
T  14206886 aggcatatacatttctatcattttattcccggaaatcaacaattataacttgaaacaaacaca 14206824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 19065570 - 19065508
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||||||| |||||||||||    
T  19065570 aggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 19065508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 22935961 - 22935915
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  22935961 atcattttattcccgggaatcaacaattataacttgaaacaaacaca 22935915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 28602577 - 28602623
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  28602577 atcattttattcccgggaatcaacaattataacttgaaacaaacaca 28602623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 11855720 - 11855657
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacacat 82  Q
    |||||||| ||||  ||||||||||||| | |||||||||||||||||||| ||||||||||||    
T  11855720 aggcatatacattcctatcattttattctcaggaatcaacaattataacttgaaacaaacacat 11855657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 36703883 - 36703942
Alignment:
Q  22 catatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||| ||||| ||||||||||||||||  |||||||||||||||||| |||||||||||    
T  36703883 catatacatttctatcattttattcccgataatcaacaattataacttgaaacaaacaca 36703942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 18412215 - 18412277
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  ||||||||||||||| |||||||| ||||||||||| |||||||||||    
T  18412215 aggcatatacattcctatcattttattcccaggaatcaataattataacttgaaacaaacaca 18412277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 29543064 - 29543018
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||    
T  29543064 atcattttattcccaggaatcaacaattataacttgaaacaaacaca 29543018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 5527533 - 5527584
Alignment:
Q  136 ccgaacagcggtggcggaacgagataacgacggcggagattggaaggtgaaa 187  Q
    ||||||||| ||||||  |||||||||||| |||||||||||||||||||||    
T  5527533 ccgaacagcagtggcgcgacgagataacgatggcggagattggaaggtgaaa 5527584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 42012241 - 42012182
Alignment:
Q  22 catatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||| |||| |||||||||||||||| |||||||||| |||| ||| |||||||||||    
T  42012241 catatgtatttctatcattttattcccgagaatcaacaaatatagcttcaaacaaacaca 42012182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 8646441 - 8646412
Alignment:
Q  34 tatcattttattcccgggaatcaacaatta 63  Q
    ||||||||||||||||||||||||||||||    
T  8646441 tatcattttattcccgggaatcaacaatta 8646412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 6930660 - 6930712
Alignment:
Q  29 atttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||| ||||||||||||| | ||||||||||| |||||||| ||| |||||||    
T  6930660 atttctatcattttattctcaggaatcaacaaatataacttgaaataaacaca 6930712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 8406915 - 8406959
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaac 78  Q
    ||||||||||||| ||  |||||||||||||||||| ||||||||    
T  8406915 tatcattttattctcgaaaatcaacaattataacttgaaacaaac 8406959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 5806359 - 5806294
Alignment:
Q  16 caaaggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  5806359 caaaggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 5806294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 6978777 - 6978839
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  6978777 aggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 6978839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 9115844 - 9115906
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  9115844 aggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 9115906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 25789770 - 25789832
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  25789770 aggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 25789832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 39930464 - 39930526
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  39930464 aggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 39930526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 51445141 - 51445083
Alignment:
Q  23 atatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  51445141 atatacatttatatcattttattcccgggaatcaacaattataacttgaaacaaacaca 51445083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 38964742 - 38964683
Alignment:
Q  21 gcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacac 80  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  38964742 gcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacac 38964683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 2430503 - 2430565
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||||||| |||||||||||    
T  2430503 aggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 2430565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 3572630 - 3572568
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||||||| |||||||||||    
T  3572630 aggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 3572568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 9831935 - 9831873
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| |||||||||||||| ||||||||||||||||||||| |||||||||||    
T  9831935 aggcatatacatttctatcattttattcctgggaatcaacaattataacttgaaacaaacaca 9831873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 36361789 - 36361851
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||||||| |||||||||||    
T  36361789 aggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 36361851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 47037464 - 47037526
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  47037464 aggcatatatatttctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 47037526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 49822982 - 49822920
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| |||||||||||||||| ||||||||||||||||||| |||||||||||    
T  49822982 aggcatatacatttctatcattttattcccgagaatcaacaattataacttgaaacaaacaca 49822920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 35187466 - 35187525
Alignment:
Q  22 catatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||| ||| |||||||    
T  35187466 catatacatttctatcattttattcccgggaatcaacaattataacttgaaaaaaacaca 35187525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 1597407 - 1597345
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  ||||||||||||||||| |||||||||||||||||| |||||||||||    
T  1597407 aggcatatacattcctatcattttattcccggaaatcaacaattataacttgaaacaaacaca 1597345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 2632859 - 2632921
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  ||| |||||||||||||||||||||||||||||||| |||||||||||    
T  2632859 aggcatatacattcctattattttattcccgggaatcaacaattataacttgaaacaaacaca 2632921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 6911500 - 6911562
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  |||||||||||||||| ||||||||||||||||||| |||||||||||    
T  6911500 aggcatatacattcttatcattttattcccgagaatcaacaattataacttgaaacaaacaca 6911562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 39329631 - 39329677
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  39329631 atcattttattcccgggaatcaacaattataacttgaaacaaacaca 39329677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 46666731 - 46666777
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  46666731 atcattttattcccgggaatcaacaattataacttgaaacaaacaca 46666777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 32202394 - 32202334
Alignment:
Q  21 gcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||| ||||| ||||||||||||  |||||||||||||||||||||| |||||||||||    
T  32202394 gcatatacatttctatcattttattttcgggaatcaacaattataacttgaaacaaacaca 32202334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 52630795 - 52630842
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||    
T  52630795 tatcattttattcccaggaatcaacaattataacttgaaacaaacaca 52630842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 5518569 - 5518507
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||  |||| |||||||||||||| |||||||||||| |||||||| |||||||||||    
T  5518569 aggcatatatatttctatcattttattcctgggaatcaacaaatataacttgaaacaaacaca 5518507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 8332037 - 8332083
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||    
T  8332037 atcattttattcccggaaatcaacaattataacttgaaacaaacaca 8332083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 20260135 - 20260089
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||    
T  20260135 atcattttattcccaggaatcaacaattataacttgaaacaaacaca 20260089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 1007768 - 1007816
Alignment:
Q  33 atatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||||| ||||||||||||| |||||||| |||||||||||    
T  1007768 atatcattttattctcgggaatcaacaaatataacttgaaacaaacaca 1007816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 12190227 - 12190180
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||||||||  |||||||||||||||||| |||||||||||    
T  12190227 tatcattttattcccgaaaatcaacaattataacttgaaacaaacaca 12190180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 14788749 - 14788792
Alignment:
Q  38 attttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||||||||||| ||||||||||| |||||||||||    
T  14788749 attttattcccgggaatcaaaaattataacttgaaacaaacaca 14788792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 32824929 - 32824991
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  ||| |||||||| |||| |||||||||||||||||| |||||||||||    
T  32824929 aggcatatacattcctattattttatttccggaaatcaacaattataacttgaaacaaacaca 32824991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 48916087 - 48916025
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| ||||||||||||| | ||||||||||| |||||||| ||| |||||||    
T  48916087 aggcatatacatttctatcattttattctctggaatcaacaaatataacttgaaataaacaca 48916025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 4683439 - 4683381
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaa 77  Q
    |||||||| ||||  |||||||||||| | |||||||||||||||||| || |||||||    
T  4683439 aggcatatacattcctatcattttatttctgggaatcaacaattataaattgaaacaaa 4683381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 13931949 - 13931887
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||| |||| ||| ||||||||||  |||||| |||| |||||||| |||||||||||    
T  13931949 aggcatatgtatttttatgattttattcctaggaatctacaaatataacttcaaacaaacaca 13931887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 31806811 - 31806758
Alignment:
Q  29 atttatatcattttattcccgggaatcaacaattataacttaaaacaaacacat 82  Q
    |||| ||||||||||||| | |||||| |||| |||||||| ||||||||||||    
T  31806811 atttctatcattttattctcaggaatctacaaatataacttgaaacaaacacat 31806758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 29091683 - 29091735
Alignment:
Q  29 atttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||| ||||||||||||  | ||||||||||| |||||||| |||||||||||    
T  29091683 atttttatcattttattatcaggaatcaacaaatataacttgaaacaaacaca 29091735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 39835370 - 39835310
Alignment:
Q  21 gcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39835370 gcatatacatttatatcattttattcccgggaatcaacaattataacttgaaacaaacaca 39835310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 40435910 - 40435972
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  40435910 aggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 40435972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 48879335 - 48879397
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  48879335 aggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 48879397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 6279983 - 6279924
Alignment:
Q  22 catatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6279983 catatacattcatatcattttattcccgggaatcaacaattataacttgaaacaaacaca 6279924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 23686797 - 23686859
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  23686797 aggcatatatatttctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 23686859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 35999696 - 35999758
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| |||||||||||||||| ||||||||||||||||||| |||||||||||    
T  35999696 aggcatatacatttctatcattttattcccgagaatcaacaattataacttgaaacaaacaca 35999758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 45747861 - 45747799
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||||||| |||||||||||    
T  45747861 aggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 45747799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 34237476 - 34237424
Alignment:
Q  28 catttatatcattttattcccgggaatcaacaattataacttaaaacaaacac 80  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  34237476 catttctatcattttattcccgggaatcaacaattataacttgaaacaaacac 34237424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 39498838 - 39498897
Alignment:
Q  22 catatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||| ||||| |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  39498838 catatacatttctatcattttatttccgggaatcaacaattataacttgaaacaaacaca 39498897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 39502177 - 39502236
Alignment:
Q  22 catatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||| ||||| |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  39502177 catatacatttctatcattttatttccgggaatcaacaattataacttgaaacaaacaca 39502236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 13230054 - 13229992
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| ||||||||||||||||||||| || ||||||||||| |||||||||||    
T  13230054 aggcatatacatttctatcattttattcccgggaataaaaaattataacttgaaacaaacaca 13229992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 18405299 - 18405237
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| ||| ||||||||| |||||||||||||||||||||| |||||||||||    
T  18405299 aggcatatacatttctataattttattctcgggaatcaacaattataacttgaaacaaacaca 18405237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 25932451 - 25932513
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| ||||||||||||||  |||||||||||||||||||| |||||||||||    
T  25932451 aggcatatacatttctatcattttattcctaggaatcaacaattataacttgaaacaaacaca 25932513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 27762948 - 27762902
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  27762948 atcattttattcccgggaatcaacaattataacttgaaacaaacaca 27762902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 41744285 - 41744223
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| ||||||||||||||||| |||||||||||||||||| ||| |||||||    
T  41744285 aggcatatacatttctatcattttattcccggaaatcaacaattataacttgaaataaacaca 41744223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 43723274 - 43723336
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| ||||||||||||  |||||||||||||||||||||| |||||||||||    
T  43723274 aggcatatacatttctatcattttattttcgggaatcaacaattataacttgaaacaaacaca 43723336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 47670372 - 47670434
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| |||||||||||| || |||||||||||||||||||| |||||||||||    
T  47670372 aggcatatacatttctatcattttatttccaggaatcaacaattataacttgaaacaaacaca 47670434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 48518956 - 48518894
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  |||||||||||||||||||||||| ||||||||||| |||||||||||    
T  48518956 aggcatatacattcctatcattttattcccgggaatcaaaaattataacttgaaacaaacaca 48518894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 55968049 - 55968003
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  55968049 atcattttattcccgggaatcaacaattataacttgaaacaaacaca 55968003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 25916085 - 25916038
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||    
T  25916085 tatcattttattcccgggaatcaaaaattataacttgaaacaaacaca 25916038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 27555435 - 27555482
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||    
T  27555435 tatcattttattcccgagaatcaacaattataacttgaaacaaacaca 27555482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 34049647 - 34049600
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  34049647 tatcattttatttccgggaatcaacaattataacttgaaacaaacaca 34049600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 39730343 - 39730296
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||    
T  39730343 tatcattttattcccgggaatcaaaaattataacttgaaacaaacaca 39730296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 45596278 - 45596337
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaac 78  Q
    |||||||| ||||| ||||||||||||||||  |||||||||||||||||| ||||||||    
T  45596278 aggcatatacatttctatcattttattcccgaaaatcaacaattataacttgaaacaaac 45596337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 936152 - 936198
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||    
T  936152 atcattttattctcgggaatcaacaattataacttgaaacaaacaca 936198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 27942768 - 27942814
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacac 80  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||    
T  27942768 tatcattttatttccgggaatcaacaattataacttgaaacaaacac 27942814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 41859096 - 41859050
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||    
T  41859096 atcattttattcccggaaatcaacaattataacttgaaacaaacaca 41859050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 8322258 - 8322305
Alignment:
Q  22 catatgcatttatatcattttattcccgggaatcaacaattataactt 69  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||||    
T  8322258 catatacatttctatcattttattcccaggaatcaacaattataactt 8322305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 18931778 - 18931825
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||||||| | |||||||||||||||||| |||||||||||    
T  18931778 tatcattttattcccagaaatcaacaattataacttgaaacaaacaca 18931825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 32953533 - 32953595
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  ||||||||| |||| ||||||||||||||||||||| | |||||||||    
T  32953533 aggcatatacattcctatcattttgttcctgggaatcaacaattataacttgagacaaacaca 32953595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 42773974 - 42774020
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||||| | |||||||||||||||||| |||||||||||    
T  42773974 atcattttattcccagaaatcaacaattataacttgaaacaaacaca 42774020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 30415927 - 30415974
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||||  ||||||||||||| |||||||| |||||||||||    
T  30415927 tatcattttattatcgggaatcaacaaatataacttgaaacaaacaca 30415974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 10400867 - 10400810
Alignment:
Q  22 catatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaaca 79  Q
    ||||| ||||| |||||||||||||||   ||||||||| |||||||| |||||||||    
T  10400867 catatacatttctatcattttattcccaaaaatcaacaaatataacttgaaacaaaca 10400810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 50672955 - 50672911
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||||||    
T  50672955 tatcattttattcccgg-aatcaacaatta--acttaaaacaaacaca 50672911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 48339822 - 48339759
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacacat 82  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  48339822 aggcatatacatttatatcattttattcccggaaatcaacaattataacttgaaacaaacacat 48339759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 1099208 - 1099266
Alignment:
Q  23 atatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1099208 atatacatttctatcattttattcccgggaatcaacaattataacttaaaacaaacaca 1099266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 11239185 - 11239123
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  11239185 aggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 11239123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 44952314 - 44952376
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  44952314 aggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 44952376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 20297799 - 20297861
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  20297799 aggcatatacatttctatcattttatttccgggaatcaacaattataacttgaaacaaacaca 20297861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 24574581 - 24574643
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||||||| |||||||||||    
T  24574581 aggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 24574643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 26849028 - 26849090
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||||||| |||||||||||    
T  26849028 aggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 26849090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 40908271 - 40908333
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||||||| |||||||||||    
T  40908271 aggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 40908333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 9320498 - 9320451
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  9320498 tatcattttattcccgggaatcaacaattataacttgaaacaaacaca 9320451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 6231566 - 6231504
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  ||||||||||||| |||||||||||||||||||||| |||||||||||    
T  6231566 aggcatatacattcctatcattttattctcgggaatcaacaattataacttgaaacaaacaca 6231504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 8476357 - 8476311
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  8476357 atcattttattcccgggaatcaacaattataacttgaaacaaacaca 8476311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 28124501 - 28124439
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  |||||||||||||||| ||||||||||||||||||| |||||||||||    
T  28124501 aggcatatacattcctatcattttattcccgagaatcaacaattataacttgaaacaaacaca 28124439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 33217978 - 33217917
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacac 80  Q
    |||||||| ||||  ||||||||||||||||| |||||||||||||||||| ||||||||||    
T  33217978 aggcatatacattcctatcattttattcccggaaatcaacaattataacttgaaacaaacac 33217917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 43715370 - 43715311
Alignment:
Q  22 catatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||| ||||| ||||||||||||  |||||||||||||||||||||| |||||||||||    
T  43715370 catatacatttctatcattttattttcgggaatcaacaattataacttgaaacaaacaca 43715311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 31435988 - 31435926
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| ||||||||||||| | ||||||||||| |||||||| |||||||||||    
T  31435988 aggcatatacatttctatcattttattctcaggaatcaacaaatataacttgaaacaaacaca 31435926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 47114906 - 47114860
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||    
T  47114906 atcattttattcccaggaatcaacaattataacttgaaacaaacaca 47114860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 20414514 - 20414468
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||||| | |||||||||||||||||| |||||||||||    
T  20414514 atcattttattcccagaaatcaacaattataacttgaaacaaacaca 20414468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 40584609 - 40584664
Alignment:
Q  22 catatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaa 77  Q
    ||||||||||| ||| ||||||||| | |||||| |||| ||||||||||||||||    
T  40584609 catatgcatttttatgattttattctcaggaatctacaaatataacttaaaacaaa 40584664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 65
Target Start/End: Complemental strand, 31611034 - 31611004
Alignment:
Q  35 atcattttattcccgggaatcaacaattata 65  Q
    |||||||||||||||||||||||||||||||    
T  31611034 atcattttattcccgggaatcaacaattata 31611004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 1246965 - 1246912
Alignment:
Q  21 gcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaac 74  Q
    ||||||| |||| |||||||||||||||| |||||||||| |||| ||| ||||    
T  1246965 gcatatgtatttctatcattttattcccgagaatcaacaaatatagcttcaaac 1246912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 45826792 - 45826844
Alignment:
Q  29 atttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||| ||||||||||||||| |||||| ||||  ||||||| |||||||||||    
T  45826792 atttctatcattttattccctggaatctacaacgataacttgaaacaaacaca 45826844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 11329999 - 11330061
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  11329999 aggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 11330061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 27213920 - 27213858
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  27213920 aggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 27213858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 39554189 - 39554251
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  39554189 aggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 39554251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 43949251 - 43949313
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  43949251 aggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 43949313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 45045632 - 45045694
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45045632 aggcatatacattcctatcattttattcccgggaatcaacaattataacttaaaacaaacaca 45045694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 25924702 - 25924642
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaaca 79  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  25924702 aggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaaca 25924642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 28904248 - 28904189
Alignment:
Q  22 catatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28904248 catatacatttctatcattttattctcgggaatcaacaattataacttaaaacaaacaca 28904189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 27419289 - 27419227
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| ||||||||||||||||||||||| |||||||||||| |||||||||||    
T  27419289 aggcatatacatttctatcattttattcccgggaatcagcaattataacttgaaacaaacaca 27419227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 33378848 - 33378910
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||||||| |||||||||||    
T  33378848 aggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 33378910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 48314128 - 48314190
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||||||| |||||||||||    
T  48314128 aggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 48314190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 48341368 - 48341430
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||||||| |||||||||||    
T  48341368 aggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 48341430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 9814268 - 9814221
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  9814268 tatcattttattcccgggaatcaacaattataacttgaaacaaacaca 9814221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 48160641 - 48160594
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  48160641 tatcattttattcccgggaatcaacaattataacttgaaacaaacaca 48160594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 8419638 - 8419592
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  8419638 atcattttattcccgggaatcaacaattataacttgaaacaaacaca 8419592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 9947055 - 9946993
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  |||||||||||||||||||||||| ||||||||||| |||||||||||    
T  9947055 aggcatatacattcctatcattttattcccgggaatcaaaaattataactttaaacaaacaca 9946993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 27248315 - 27248361
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  27248315 atcattttattcccgggaatcaacaattataacttgaaacaaacaca 27248361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 38544200 - 38544262
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  38544200 aggcatatacattcctatcattttatttccgggaatcaacaattataacttgaaacaaacaca 38544262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 40212895 - 40212957
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  |||||||||||||||| ||||||||||||||||||| |||||||||||    
T  40212895 aggcatatacattcctatcattttattcccgcgaatcaacaattataacttgaaacaaacaca 40212957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 41632429 - 41632367
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| ||||||||||||| | |||||||||||||||||||| |||||||||||    
T  41632429 aggcatatacatttctatcattttattctcaggaatcaacaattataacttgaaacaaacaca 41632367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 34930531 - 34930468
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataac-ttaaaacaaacaca 81  Q
    |||||||| ||||| ||||||||||||||| |||||||||||||||||| || |||||||||||    
T  34930531 aggcatatacatttctatcattttattcccaggaatcaacaattataactttgaaacaaacaca 34930468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 16825419 - 16825357
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| ||||||||||||||  ||||| |||||||||||||| |||||||||||    
T  16825419 aggcatatacatttctatcattttattcctaggaattaacaattataacttgaaacaaacaca 16825357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 35488238 - 35488192
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||    
T  35488238 atcattttattcccggaaatcaacaattataacttgaaacaaacaca 35488192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 38396416 - 38396370
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacac 80  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||    
T  38396416 tatcattttattcccgggaatcaacaattataacttggaacaaacac 38396370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 45265097 - 45265051
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||    
T  45265097 atcattttattcccgagaatcaacaattataacttgaaacaaacaca 45265051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 44566066 - 44566113
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||| |||| |||||||||||||||||| |||||||||||    
T  44566066 tatcattttatttccggaaatcaacaattataacttgaaacaaacaca 44566113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 45723228 - 45723275
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||||| ||||||||||||| |||||||| |||||||||||    
T  45723228 tatcattttattctcgggaatcaacaaatataacttgaaacaaacaca 45723275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 45448963 - 45449009
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacac 80  Q
    |||||||||||||||| ||||||| ||||||||||| ||||||||||    
T  45448963 tatcattttattcccgagaatcaaaaattataacttgaaacaaacac 45449009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 25098076 - 25098137
Alignment:
Q  20 ggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||| ||||  ||||||||||||||||  |||||| ||||||||||| |||||||||||    
T  25098076 ggcatatacattcctatcattttattcccgaaaatcaaaaattataacttgaaacaaacaca 25098137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 44820269 - 44820322
Alignment:
Q  28 catttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||| |||||||||||||| |  |||||||||||||||||| |||||||||||    
T  44820269 catttctatcattttattcctgaaaatcaacaattataacttgaaacaaacaca 44820322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 11000719 - 11000771
Alignment:
Q  29 atttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||||||||| || ||||||||||  |||||||| |||||||||||    
T  11000719 atttatatcattttatttccaggaatcaacatatataacttgaaacaaacaca 11000771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 41684077 - 41684025
Alignment:
Q  29 atttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||| |||||| |||||| | ||||||||||| |||||||| |||||||||||    
T  41684077 atttctatcatattattctcaggaatcaacaaatataacttgaaacaaacaca 41684025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 8029339 - 8029401
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  8029339 aggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 8029401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 7053635 - 7053573
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||||||| |||||||||||    
T  7053635 aggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 7053573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 2657721 - 2657768
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  2657721 tatcattttattcccgggaatcaacaattataacttgaaacaaacaca 2657768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 1317040 - 1317086
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  1317040 atcattttattcccgggaatcaacaattataacttgaaacaaacaca 1317086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 18897927 - 18897989
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| ||||| |||||| ||||||||||||||||||||||| |||||||||||    
T  18897927 aggcatatacatttctatcactttatttccgggaatcaacaattataacttgaaacaaacaca 18897989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 14171034 - 14171081
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||    
T  14171034 tatcattttattcccgggaatcaaaaattataacttgaaacaaacaca 14171081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 16968946 - 16968989
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaa 77  Q
    ||||||||||||| | |||||||||||||||||||| |||||||    
T  16968946 tatcattttattctcaggaatcaacaattataacttgaaacaaa 16968989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 10246258 - 10246225
Alignment:
Q  48 cgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||||||||||||| |||||||||||    
T  10246258 cgggaatcaacaattataacttgaaacaaacaca 10246225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 9733911 - 9733849
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  9733911 aggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 9733849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 34356762 - 34356703
Alignment:
Q  22 catatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  34356762 catatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 34356703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 37192531 - 37192590
Alignment:
Q  22 catatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  37192531 catatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 37192590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 346410 - 346348
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||||||| |||||||||||    
T  346410 aggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 346348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 39995196 - 39995134
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||||||| |||||||||||    
T  39995196 aggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 39995134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 26310278 - 26310335
Alignment:
Q  22 catatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaaca 79  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  26310278 catatacatttctatcattttattcccgggaatcaacaattataactttaaacaaaca 26310335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 21737450 - 21737403
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  21737450 tatcattttattcccgggaatcaacaattataacttgaaacaaacaca 21737403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 6171797 - 6171859
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  ||||||||||||| |||||||||||||||||||||| |||||||||||    
T  6171797 aggcatatacattcctatcattttattctcgggaatcaacaattataacttgaaacaaacaca 6171859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 11071611 - 11071673
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  ||||||||||||||||| |||||||||||||||||| |||||||||||    
T  11071611 aggcatatacattcctatcattttattcccggaaatcaacaattataacttgaaacaaacaca 11071673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 41750535 - 41750597
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||| ||||||||||||||  |||||||||||||||||||| |||||||||||    
T  41750535 aggcatatacatttctatcattttattcctaggaatcaacaattataacttgaaacaaacaca 41750597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 42674710 - 42674664
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  42674710 atcattttattcccgggaatcaacaattataacttgaaacaaacaca 42674664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 5770175 - 5770115
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaaca 79  Q
    |||||||| ||||  ||||||||||||||| |||||||||||||||||||| |||||||||    
T  5770175 aggcatatacattcctatcattttattcccaggaatcaacaattataacttgaaacaaaca 5770115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 40950914 - 40950862
Alignment:
Q  29 atttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||| |||||||||||||||| ||||||||||||||||||| |||||||||||    
T  40950914 atttctatcattttattcccgagaatcaacaattataacttgaaacaaacaca 40950862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 2050887 - 2050934
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||    
T  2050887 tatcattttattctcgggaatcaacaattataacttgaaacaaacaca 2050934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 37533973 - 37534020
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||    
T  37533973 tatcattttattcccggaaatcaacaattataacttgaaacaaacaca 37534020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 14777547 - 14777501
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||||||||||||||||||||||| || |||||||||||    
T  14777547 atcattttattcccgggaatcaacaattataaattgaaacaaacaca 14777501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 28311747 - 28311701
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacac 80  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||    
T  28311747 tatcattttattcccgggaatcaacaaatataacttgaaacaaacac 28311701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 37233450 - 37233496
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacac 80  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||    
T  37233450 tatcattttattcccgggaatcaacaaatataacttgaaacaaacac 37233496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 41729195 - 41729133
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  ||||||||||||||||||||| || ||||||||||| |||||||||||    
T  41729195 aggcatatccattcctatcattttattcccgggaataaaaaattataacttgaaacaaacaca 41729133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 20426533 - 20426486
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||||||||||||||||||| ||||| || |||||||||||    
T  20426533 tatcattttattcccgggaatcaacaaatataatttgaaacaaacaca 20426486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 638614 - 638660
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacac 80  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||    
T  638614 tatcattttatttccggaaatcaacaattataacttgaaacaaacac 638660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 2521697 - 2521743
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||  |||||||||||||||||||||| |||||||||||    
T  2521697 atcattttattttcgggaatcaacaattataacttgaaacaaacaca 2521743  T

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Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 4559581 - 4559627
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||||  ||||||||||||||||||||| |||||||||||    
T  4559581 atcattttattcttgggaatcaacaattataacttgaaacaaacaca 4559627  T

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Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 17966005 - 17966051
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||||||  |||||||||||||||||||||| |||||||||||    
T  17966005 atcattttattatcgggaatcaacaattataacttgaaacaaacaca 17966051  T

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Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 18713722 - 18713660
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||  ||||||||||||||||| ||  |||||||||| |||||||| |||||||||||    
T  18713722 aggcatatatatttatatcattttattaccatgaatcaacaaatataacttgaaacaaacaca 18713660  T

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Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 14832816 - 14832877
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacac 80  Q
    ||||||||  |||| ||||||||||||||  ||||||||||| |||||||| ||||||||||    
T  14832816 aggcatatatatttctatcattttattcctaggaatcaacaaatataacttgaaacaaacac 14832877  T

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Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 1988327 - 1988379
Alignment:
Q  29 atttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||| ||||||||||||||| | ||||||||| |||||||| |||||||||||    
T  1988327 atttctatcattttattcccagaaatcaacaaatataacttcaaacaaacaca 1988379  T

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Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 13760966 - 13761014
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacacat 82  Q
    ||||||||||||||||  |||||| ||||||||||| ||||||||||||    
T  13760966 tatcattttattcccgaaaatcaataattataacttgaaacaaacacat 13761014  T

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Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 27358013 - 27357966
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||| || |||||||||||| |||||||| |||||||||||    
T  27358013 tatcattttatacctgggaatcaacaaatataacttgaaacaaacaca 27357966  T

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Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 40570045 - 40570088
Alignment:
Q  38 attttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    ||||||||||| |||||| ||||||||||||| |||||||||||    
T  40570045 attttattcccaggaatctacaattataacttgaaacaaacaca 40570088  T

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Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 45409256 - 45409318
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  ||||||||||| |  |||||||||||| |||||||| |||||||||||    
T  45409256 aggcatatacattcctatcattttatacttgggaatcaacaaatataacttgaaacaaacaca 45409318  T

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Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 14253538 - 14253578
Alignment:
Q  29 atttatatcattttattcccgggaatcaacaattataactt 69  Q
    |||| |||||||||||||||| |||||||||| ||||||||    
T  14253538 atttctatcattttattcccgagaatcaacaaatataactt 14253578  T

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Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 14403288 - 14403236
Alignment:
Q  29 atttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||| |||||||||||| || ||||||||||| || ||||| |||||||||||    
T  14403288 atttttatcattttatttccaggaatcaacaaatacaacttcaaacaaacaca 14403236  T

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Target: scaffold0006 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 201931 - 201993
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaacaca 81  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||||||| |||||||||||    
T  201931 aggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 201993  T

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Target: scaffold0189 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 29017 - 28957
Alignment:
Q  19 aggcatatgcatttatatcattttattcccgggaatcaacaattataacttaaaacaaaca 79  Q
    |||||||| ||||  ||||||||||||||||  |||||||||||||||||| |||||||||    
T  29017 aggcatatacattcctatcattttattcccgaaaatcaacaattataacttgaaacaaaca 28957  T

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