View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11981_low_2 (Length: 529)
Name: NF11981_low_2
Description: NF11981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11981_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 264
Target Start/End: Complemental strand, 7665105 - 7664854
Alignment:
| Q |
14 |
agtagtttgagaacagaaagtatccatgtggatatacaggaggtttccatctagtcaaaagtcaaaaccaatgaccccactaaaagcaagaaaa-gtgct |
112 |
Q |
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| T |
7665105 |
agtagtttgagaacagaaagtatccacgtgaatatacaggaggtttccatctagtcaaaagtcaaaaccaatgaccccactaaaagcaagaaaaagtgct |
7665006 |
T |
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| Q |
113 |
tacaaaataacaataataactgaacaaagcatgaaccactgatgcattctacatgattaaaatgtttgtctttcacctcacttatatgtagacatacacc |
212 |
Q |
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| T |
7665005 |
tacaaaataacaataataactgcacaaaacatgaaccactgatgcattctacatgattaaaatgtttgtctctcacctcacttatatgtagacatacacc |
7664906 |
T |
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| Q |
213 |
agaactcttttgcctttccccctcaattttctgcttgattttggctttcatg |
264 |
Q |
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| T |
7664905 |
agaactcttttgcctttccccctcaattttctgcttgattttggctttcatg |
7664854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 389 - 487
Target Start/End: Complemental strand, 7664238 - 7664141
Alignment:
| Q |
389 |
aatggcgtaagtagggtgtgttttaatatttattaattctttttatcgatttcaatcacatcacaaattaagtggtgtgtttttataccatattgatat |
487 |
Q |
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| T |
7664238 |
aatggtgtaagtagggtgtgttttaatatttattaattctttttatcgatttcaatcacatcacaaattaagtggtgtgtttttata-catattgatat |
7664141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 7664790 - 7664735
Alignment:
| Q |
328 |
actaatatgaattggctc-aagaagttaactataaaa-ataatgtccaccatcgta |
381 |
Q |
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| T |
7664790 |
actaatatgaattggctcaaagaagttaactataaaatataatgtccaccatcgta |
7664735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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