View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11981_low_3 (Length: 484)
Name: NF11981_low_3
Description: NF11981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11981_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 474
Target Start/End: Original strand, 39277956 - 39278421
Alignment:
| Q |
18 |
gaaccaccaaagtgaggatcataaaacttgattatccaggacaactaatgccaagtttagtaattgaaaataacttgttcatttcgtat--tttggttta |
115 |
Q |
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| T |
39277956 |
gaaccaccaaagtgaggatcataaaacttgattatccaggacaagtaatgccaagtttagtaattgaaaataacttgttcatttcgtataatttggttta |
39278055 |
T |
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| Q |
116 |
tcactctactgcttattctttatggtataagaacgctgttaaatttatatcgagagggaaaatctatcttgtttgcccaacaagttttttgagagagatt |
215 |
Q |
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| T |
39278056 |
tcactctactgcttattctttctggtataagaacgctgttaaatttatatcgagagggaaaatctatcttgtttgcccaacaagttttttgagagagatt |
39278155 |
T |
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| Q |
216 |
aattacctctatacgacggtaaaattcttgtacttataacatggtaatctaaaaaacatatagtattgaatattctgattcgttgaacatatataaaaat |
315 |
Q |
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| T |
39278156 |
aattacctctatacgacggtaaaattcttgtacttataacatggtaatctaaaaaacatatagtattgaatattttgattcgttgaacatatataaaaat |
39278255 |
T |
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| Q |
316 |
aaaatctcaaatgaaatacctgttttgaagataatgtgttattttttccaaagacagtggagccatacgtccatacctttagagtgacttagccaagtgc |
415 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39278256 |
aaaatcccaaatgaaatacctgttttgaagataatgtgttattttttccaaagacagtggagccatacgtccatacctttagaatgacttagccaagtgc |
39278355 |
T |
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| Q |
416 |
atgctacttgctacttgggcagttat-------atatgttttttgtgtgatccatgctaccctatg |
474 |
Q |
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| T |
39278356 |
atgctacttgctacttgggcagttatttatatagtatgttttttgtgtgatccatgctaccctatg |
39278421 |
T |
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