View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982A_high_16 (Length: 252)
Name: NF11982A_high_16
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_high_16 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 50157260 - 50157022
Alignment:
| Q |
14 |
agaccaaaacaattaagttccaacatccatgcactccgctctattatgttttgccaaccgagacagtgccttggagatcataattgcttgatttcgatta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
50157260 |
agaccaaaacaattaagttccaacatccatgcactccgctctattatgttttgccaactgagacagtgccttggagattataattgcttgatttcgatta |
50157161 |
T |
|
| Q |
114 |
aataattgaactcagttacagtaaaagtgacgagttttcaagttatgtatagaagacttttggataacaatgtaccagtgaatatgctgctcggcnnnnn |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50157160 |
aataattgaactcagttacagtaaaagtgacgagtgttcaagttatgtatagaatacttttggataacaatgtaccagtgaatatgctgctcggcaaaaa |
50157061 |
T |
|
| Q |
214 |
nncttgtccaacatcaacttttagagtgcattcaaacca |
252 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
50157060 |
aacttgtccaacctcaacttttagagtgcattcaaacca |
50157022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University