View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_10 (Length: 471)
Name: NF11982A_low_10
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 35 - 469
Target Start/End: Complemental strand, 7017667 - 7017233
Alignment:
| Q |
35 |
tggatatagcgagataaaacacattcttttttgaagaaaggaaattcatttattttcattagctgcaatgtgtcaaatacatgacgatagagaaaataca |
134 |
Q |
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| T |
7017667 |
tggatatagcgagataaaacacattcttttttgaagaaaggaaattcatttattttcattagccgcaatgtgtcaaatacatgacggtagagaaaacgca |
7017568 |
T |
|
| Q |
135 |
ttctagtatgtgtatgactgcgttcatcaatgttagtccatctcatattcagcaaaatacaagaaattaaattattgatcacacaaatcaaaacccctta |
234 |
Q |
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| T |
7017567 |
ttctagtatgtgtgtgattgcgttcatcaatgttagtccatctcatattcagcaaaatacaagaaattaaattattggtcacacaaatcaaaacccctta |
7017468 |
T |
|
| Q |
235 |
attaggctatttgacaagaccattgttttatctatttttgtgtggttcttctattgagcatttgagaattaggaatatgttagtcctctctttcaatttt |
334 |
Q |
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| T |
7017467 |
attaggctatttgacaagaccattgttttatctatttttgtgtggttcttctattgagcatttgagaattaggaatatgttagtcctctctttcaatttt |
7017368 |
T |
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| Q |
335 |
tattcctttcttctaaactttttctaatgaaaatgaaaggagagaataaaatagaaaagaaagtcattcatctatttcccgtggaagaaagagctaatta |
434 |
Q |
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| T |
7017367 |
tattcctttcttctaaactttttctaatgaaaatgaaaggagagaataaaatagaaaagaaagtcattcatctatttcccgtggaagaaagagctaatta |
7017268 |
T |
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| Q |
435 |
gtagtaactccaacaaaagtttgtaacagtttaag |
469 |
Q |
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| T |
7017267 |
gtagtaactccaacaaaagtttgtaaaagtttaag |
7017233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 25396205 - 25396252
Alignment:
| Q |
71 |
aaaggaaattcatttattttcattagctgcaatgtgtcaaatacatga |
118 |
Q |
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| T |
25396205 |
aaaggaaattcattgtttttcattagctacaatgtgtctaatacatga |
25396252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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