View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_100 (Length: 353)
Name: NF11982A_low_100
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_100 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 22 - 331
Target Start/End: Original strand, 45200532 - 45200841
Alignment:
| Q |
22 |
atataacttataacatttgtagcatcgacacttctgatcaaatgcatgtatggtgtccaacacatcttagtgtcggacatcaacaccacaccgacaattg |
121 |
Q |
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| T |
45200532 |
atataacttataacatttgtagcatcgacacttctgatcgaatgtatgtatggtgtccaacacatctcagtgtcggacatcaacaccacaccgacaaatg |
45200631 |
T |
|
| Q |
122 |
attattgttgtcgacatgtcaatgtctgttattcatagattgtaaaaaataaaatgtaacaaactgtgagtttgtcaaaatcacggtgacatcatgattt |
221 |
Q |
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| T |
45200632 |
attattgttgtcgacatgtcaatgtctgttattcatagattgtaacaaataaaatgtaacaaacggtgagtttttcaaaatcacagtgacattatgattt |
45200731 |
T |
|
| Q |
222 |
tgttgaagctatgtatggcttttaccaaaatcacaatgactcatcgtgattctaatgctacgcttcaccgtcaatcaaaacattcacaaagtagaaaaac |
321 |
Q |
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| T |
45200732 |
tgttgaagctaagtatggcttttaccaaaatcacaatgactcatcgtgattctaaagctacgcttcaccgtcaatcaaaacattcacaaagtagaaaaac |
45200831 |
T |
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| Q |
322 |
ttacgaggtc |
331 |
Q |
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|||||||||| |
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| T |
45200832 |
ttacgaggtc |
45200841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 7873062 - 7873108
Alignment:
| Q |
187 |
gtgagtttgtcaaaatcacggtgacatcatgattttgttgaagctat |
233 |
Q |
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| T |
7873062 |
gtgagtttgataaaattacggtgacaccatgattttgttgaagctat |
7873108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 23585692 - 23585733
Alignment:
| Q |
188 |
tgagtttgtcaaaatcacggtgacatcatgattttgttgaag |
229 |
Q |
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| T |
23585692 |
tgagtttgacaaaatcacagtgacaacatgattttgttgaag |
23585733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 27870987 - 27870946
Alignment:
| Q |
187 |
gtgagtttgtcaaaatcacggtgacatcatgattttgttgaa |
228 |
Q |
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| T |
27870987 |
gtgagtttgataaaatcacggtgacaccatgattttgttgaa |
27870946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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