View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_103 (Length: 349)
Name: NF11982A_low_103
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_103 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 6 - 339
Target Start/End: Complemental strand, 35450052 - 35449719
Alignment:
| Q |
6 |
tttggtgttagtacttcaatcattgattgatcaataattggtgaagaaacaatgctttcttcacaatctgatgaagacaaagaaaaaccattgtttgagt |
105 |
Q |
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| T |
35450052 |
tttggtgttagtacttcaatcattgattgatcaataattggtgaagaaacaatgctttcttcacaatctgaagaagacaaagaaaaaccattgtttgagt |
35449953 |
T |
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| Q |
106 |
caattccttttcttgtaacttgttcatcttcaatgcttgaaactccggaaagtggagcattttgttgttgatggaaaactagcttttccaagagaagtct |
205 |
Q |
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| T |
35449952 |
caattccttttcttgtaacttgttcatcttcaatgcttgaaactccggaaagtggatcattttgttgttgatggaaaactagcttttccaagagaagtct |
35449853 |
T |
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| Q |
206 |
ttcacatttttcttgtgcttcatctctttctctaatgatgttgttgattagatctttaaggttcattagttgttcatcnnnnnnngtgagctcctcttgt |
305 |
Q |
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| T |
35449852 |
ttgacatttttcttgtgcttcatctctttctctaatgatgttgttgattagatctttaaggttcattagttgttcatctttttttgtgagttcttcttgt |
35449753 |
T |
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| Q |
306 |
gctgttactcttgtttgttcaagctctcaagttg |
339 |
Q |
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| T |
35449752 |
gctgttactcttgtttgttcaagctctaaagttg |
35449719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 331
Target Start/End: Original strand, 21010633 - 21010794
Alignment:
| Q |
170 |
ttgttgatggaaaactagcttttccaagagaagtctttcacatttttcttgtgcttcatctctttctctaatgatgttgttgattagatctttaaggttc |
269 |
Q |
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|||||| ||||||| || |||||| |||| |||||||| ||||||||||||||||||||||||||||| || | ||||||| || ||||| ||||| |
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| T |
21010633 |
ttgttgttggaaaagtaacttttctaagaaaagtctttggcatttttcttgtgcttcatctctttctcttataactttgttgaaaagttcttttaggtta |
21010732 |
T |
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| Q |
270 |
attagttgttcatcnnnnnnngtgagctcctcttgtgctgttactcttgtttgttcaagctc |
331 |
Q |
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| T |
21010733 |
tgtagttgttcatctctttttcttagttcttcttgtactgttactcttgtttgttctagctc |
21010794 |
T |
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