View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982A_low_105 (Length: 348)
Name: NF11982A_low_105
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_105 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 14 - 344
Target Start/End: Complemental strand, 4274629 - 4274298
Alignment:
| Q |
14 |
ttttgatattgtggcaatccattactatccttaatgttacgattgtcatttcaaagatctttaaatttaccgacgaatgttggttcaagtggcaagaaag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4274629 |
ttttgatattgtggcaatccattactatccttaatgttacgattgtcatttcaaagatctttaaatttaccgacgaatgttggttcaagtggcaagaaag |
4274530 |
T |
|
| Q |
114 |
tttggtgctcctaagtacgatatgaggttgagtcttgtaaatggaaaaatttatgttattccctttattcttatctactgactcagttcatgtcatacat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4274529 |
tttggtgctcctaagtacgatatgaggttgaatcttgtaaatggaaaaatttatgttattccctttattcttatctactgactcagttcatgtcatacat |
4274430 |
T |
|
| Q |
214 |
atagtgttaacgacaaaatattctaacaagtccaataa-nnnnnnnncctaaatgttaatccgaatttgtttttcttaaactaaacaatctttaaatttt |
312 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4274429 |
atagtgtaaacgacaaaatattctaataagtccaataatttttttttcctaaatgttaatccgaatttgtttttcttaaactaaacaatctttaaatttt |
4274330 |
T |
|
| Q |
313 |
tcctggcgtgttccaatcctttaactccaaac |
344 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||| |
|
|
| T |
4274329 |
tccttgcgtgttccaatcctttaattccaaac |
4274298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University