View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_108 (Length: 345)
Name: NF11982A_low_108
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_108 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 14 - 345
Target Start/End: Original strand, 8554545 - 8554878
Alignment:
| Q |
14 |
gaacatgaagcagaagaaagccctaaataaacacacacacaaaaattaatataggatatagtatataatatttaatcaattagttacnnnnnnnnn-ctt |
112 |
Q |
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| T |
8554545 |
gaacatgaagcagaagaaagccctaaataaacacacacacaaaaattaatataggatatagtatataatatttaatcaattagttacttttttttttctt |
8554644 |
T |
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| Q |
113 |
ctctcaaaa-ggaaaaagaatataccagcagatgaaatgttgtaagtagaatggttggtatgaacattaatgttttgttgttgttcatgatgatcaggtt |
211 |
Q |
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| T |
8554645 |
gtctcaaaaaggaaaaagaatataccagcagatgaaatgttgtaagtagaatggttggtatgaacattaatgttttgttgttgttcatgatgatcaggtt |
8554744 |
T |
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| Q |
212 |
tccaattagcagcagaaataatagtattgttgtttggtgctctttgaatgataggaacgacattaacatcagaagtgaaccttttcttctgtctttctct |
311 |
Q |
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| T |
8554745 |
tccaattagcagcagaaataatagtattgttgtttggtgctctttgaatgatgggaacaacattaacatcagaagtgaaccttttcttctgtctttctct |
8554844 |
T |
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| Q |
312 |
agctttgtgattttgaaaccaataaaagacattt |
345 |
Q |
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| T |
8554845 |
agctttgtgattttgaaaccaataaaagacattt |
8554878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 344
Target Start/End: Original strand, 35184617 - 35184660
Alignment:
| Q |
301 |
tgtctttctctagctttgtgattttgaaaccaataaaagacatt |
344 |
Q |
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| T |
35184617 |
tgtctttctctagctttgtgattttgaaaccaatagaacacatt |
35184660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 247 - 340
Target Start/End: Complemental strand, 24023567 - 24023474
Alignment:
| Q |
247 |
ggtgctctttgaatgataggaacgacattaacatcagaagtgaaccttttcttctgtctttctctagctttgtgattttgaaaccaataaaaga |
340 |
Q |
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| T |
24023567 |
ggtgctctttgaataataggaacaacattaacatcagaagtgaaccttttcttctgtgtttttctagctttgtgattttggaaccaataaaaga |
24023474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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