View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_112 (Length: 339)
Name: NF11982A_low_112
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_112 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 12 - 333
Target Start/End: Original strand, 5826970 - 5827291
Alignment:
| Q |
12 |
tactagatggactgaatatcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcg |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5826970 |
tactagatggactgaatatcaaaactttcaaactaagctggttgagacaacaaatgggtttggttggtcaagagcctattcttttcaacgaaagcattcg |
5827069 |
T |
|
| Q |
112 |
tgccaacatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttcca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5827070 |
tgccaacatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaacttcataagctctcttcca |
5827169 |
T |
|
| Q |
212 |
ggtggttacaatacatcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaa |
311 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5827170 |
ggtggttacaatacttcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaa |
5827269 |
T |
|
| Q |
312 |
tacttttacttgatgaggcaac |
333 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
5827270 |
tacttttacttgatgaggcaac |
5827291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 330
Target Start/End: Original strand, 5768517 - 5768835
Alignment:
| Q |
12 |
tactagatggactgaatatcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcg |
111 |
Q |
| |
|
||||||||||| || |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5768517 |
tactagatggagtggatataaaaactttcagactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcg |
5768616 |
T |
|
| Q |
112 |
tgccaacatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttcca |
211 |
Q |
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|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| |
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| T |
5768617 |
tgccaacatagcttatggcaaagaaggaggtgctatggaggatgagataattgcagcagctaaagcagccaatgcacacaatttcataagctctcttcca |
5768716 |
T |
|
| Q |
212 |
ggtggttacaatacatcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaa |
311 |
Q |
| |
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|||||| | || || || || ||||||||||||||| ||||||| ||||| || || ||||| || ||||||||||| || |||||||||| | || |
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| T |
5768717 |
aatggttatgacacctctgtcggggaaagaggcacacagctatcaggaggacagaagcagcgtattgctattgcaagagccatgctgaaaaaccccaaaa |
5768816 |
T |
|
| Q |
312 |
tacttttacttgatgaggc |
330 |
Q |
| |
|
||||||| ||||| ||||| |
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| T |
5768817 |
tacttttgcttgacgaggc |
5768835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 12 - 330
Target Start/End: Complemental strand, 5829931 - 5829613
Alignment:
| Q |
12 |
tactagatggactgaatatcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcg |
111 |
Q |
| |
|
||||||||||| || || |||||||||||| | ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5829931 |
tactagatggagtggatctcaaaactttcagattaagctggttgagacaacaaatggggttggttggtcaagagcctattcttttcaacgaaagcattcg |
5829832 |
T |
|
| Q |
112 |
tgccaacatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttcca |
211 |
Q |
| |
|
||| ||||||| |||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||| ||| ||||| ||||||| |
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| T |
5829831 |
tgctaacataggttatggaaaagaagggggtgctacagaggatgagatcattgcagcagctaacgcagcaaatgcacacagcttcataagtaatcttcca |
5829732 |
T |
|
| Q |
212 |
ggtggttacaatacatcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaa |
311 |
Q |
| |
|
| ||| || | || || || || ||||||||||| || | || || ||||| || || || || || ||||||||| | || | |||||||| | || |
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| T |
5829731 |
gatggatatgacacgtctgttggagaaagaggcacgcaactgtccggaggacagaagcagcgcattgctattgcaagaaccatgctaaaaaaccccaaaa |
5829632 |
T |
|
| Q |
312 |
tacttttacttgatgaggc |
330 |
Q |
| |
|
||||||| ||||||||||| |
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|
| T |
5829631 |
tacttttgcttgatgaggc |
5829613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 235 - 333
Target Start/End: Original strand, 5794793 - 5794883
Alignment:
| Q |
235 |
cgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatacttttacttgatgaggcaac |
333 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
5794793 |
cgaaagaggcacacagttaccaggtggacaaaaacaatgt--------tgcaagagctatattgaaagaccctagaatacttttacttgatgaggcaac |
5794883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 12 - 333
Target Start/End: Complemental strand, 29327445 - 29327124
Alignment:
| Q |
12 |
tactagatggactgaatatcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcg |
111 |
Q |
| |
|
||||||||||| || ||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29327445 |
tactagatggagtggatatcaaaactttcagaataagctggttgagacaacaaatgggtttggttggtcaagagcctattcttttcaacgaaagcattcg |
29327346 |
T |
|
| Q |
112 |
tgccaacatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttcca |
211 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
29327345 |
cgccaacatagcttatggtaaagaagatggtgctacggaggatgagatcatagcagcagcgaacgcagccaatgcacacaacttcataagttctcttcct |
29327246 |
T |
|
| Q |
212 |
ggtggttacaatacatcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaa |
311 |
Q |
| |
|
| |||||| | || || || ||||||||||||||||| |||| || ||||| || || || || || ||||||||||| || |||||||||||| || |
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|
| T |
29327245 |
gatggttatgacacttctgttggcgaaagaggcacacaactatctggaggacagaagcagcgcattgcgattgcaagagccatgctgaaaaaccctaaaa |
29327146 |
T |
|
| Q |
312 |
tacttttacttgatgaggcaac |
333 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
29327145 |
tacttttgcttgatgaggcaac |
29327124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 3431268 - 3431216
Alignment:
| Q |
251 |
ttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaa |
303 |
Q |
| |
|
||||| ||||||||||| ||| | || ||||||||||||||||| |||||||| |
|
|
| T |
3431268 |
ttatctggtggacaaaagcaaaggattgcaattgcaagagctatgttgaaaaa |
3431216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 17872447 - 17872391
Alignment:
| Q |
229 |
ggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgc |
285 |
Q |
| |
|
|||||| |||||||| | || ||||||||||||||||||||| | ||||||||||| |
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|
| T |
17872447 |
ggtaggagaaagagggattcaattatcaggtggacaaaaacaaagaatagcaattgc |
17872391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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