View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_116 (Length: 338)
Name: NF11982A_low_116
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_116 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 33905545 - 33905234
Alignment:
| Q |
18 |
aatttcactatcaaaatcataactatattgtatataaaaagattcttgaatttctaaagacaaaacttcatgtaccaatatcaccaaaaattaggtggtg |
117 |
Q |
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| T |
33905545 |
aatttcactatcaaaatcataactatattgtatataaaaacattcttgaatttctaaagacaaaacttcatgtaccaatatcaccaaaaattaggtggtg |
33905446 |
T |
|
| Q |
118 |
catgtattgatttatgccccttatatttattattaccataaagggctctaaaaaatctcctagacctgtttgttttcaacttcataaaaggaaccttacg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33905445 |
catgtattgatttatgccccttatatttattattaccataaagggctctaaaaaatctcctagacctgtttgttttcaacttcataaaaggaaccttacg |
33905346 |
T |
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| Q |
218 |
tgaaacagcttgccaaatcacttgaacagcatcaccttccttagaagggaactgaaattcaaagaatttttcaacttctttcaatctgttccacattctt |
317 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33905345 |
tgaaacagcttgccaaatcatttcaacagcatcaccttccttagaagggaactgaaattcaaagaatttttcaacttctttcaatctgttccacattctt |
33905246 |
T |
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| Q |
318 |
gtccattcatct |
329 |
Q |
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|||||||||||| |
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| T |
33905245 |
gtccattcatct |
33905234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 192 - 322
Target Start/End: Original strand, 9326228 - 9326358
Alignment:
| Q |
192 |
ttcaacttcataaaaggaaccttacgtgaaacagcttgccaaatcacttgaacagcatcaccttccttagaagggaactgaaattcaaagaatttttcaa |
291 |
Q |
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||||| |||||| ||||||| ||| ||||||||||||||||||||| ||| |||||||||||||||||||| || || | | |||||||||| | ||||| |
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| T |
9326228 |
ttcaatttcatagaaggaactttatgtgaaacagcttgccaaatcatttgtacagcatcaccttccttagatggaaaattatattcaaagaaatgttcaa |
9326327 |
T |
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| Q |
292 |
cttctttcaatctgttccacattcttgtcca |
322 |
Q |
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| |||||||| ||||||||||| ||||||| |
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| T |
9326328 |
cctctttcaacttgttccacatttttgtcca |
9326358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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