View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_122 (Length: 332)
Name: NF11982A_low_122
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_122 |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 35743114 - 35742801
Alignment:
| Q |
19 |
agattttgcattgactcttctgatatttcttgtgttgcatcggtattttgaagtcatatcgtaatatttacacttctgcttgcttgaatttgtagttcac |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35743114 |
agattttgcattgactcttctgatatttcttgtgttgcatcagtattttgaagtcagatcgtaatatttacacttctgcttgcttgaatttgtagttcac |
35743015 |
T |
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| Q |
119 |
ttatgactctttccgatcaagaggatcaaattgatcgaatcagtgacttaccatgcaatgtcattgacggcatcctgtcacacttggacatcaaagacct |
218 |
Q |
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| T |
35743014 |
ttatgactctttccgatcaagaggatcaaattgatcgaatcagtgacttaccatgcaatgtcattgacggcatcctgtcacacttggacatcaaagacct |
35742915 |
T |
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| Q |
219 |
agttgggactagtattttgtctaaacagtggaggtataagtggactaaagccccacgactttggtttagtgaggacttttttgaggagtgcgaggatctc |
318 |
Q |
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| T |
35742914 |
agttgggactagtattttgtctaaacagtggaggtataagtggactaaagccccacgactttggtttagtgaggacttttttgaagagtacgaggatctc |
35742815 |
T |
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| Q |
319 |
gaagatctcgaaga |
332 |
Q |
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| T |
35742814 |
gaagatctcgaaga |
35742801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 79 - 320
Target Start/End: Complemental strand, 35749425 - 35749175
Alignment:
| Q |
79 |
gtaatatttacacttctgcttgcttgaatttgtagttcacttatgactctttccgatcaagagg----------atcaaattgatcgaatcagtgactta |
168 |
Q |
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| T |
35749425 |
gtaatatttacacttgtgcttgcttgaatttgtagttaccttatgactctgtctaa-caagaaggccaatcatgatcacattgatcgaatcagtgactta |
35749327 |
T |
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| Q |
169 |
ccatgcaatgtcattgacggcatcctgtcacacttggacatcaaagacctagttgggactagtattttgtctaaacagtggaggtataagtggactaaag |
268 |
Q |
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| T |
35749326 |
ccatgtaatgttattgatgatatcctagcacgcttgtacatcaaagacctagttaggactagtattttgtcaaaaaattggaggtatatgtgaacttcag |
35749227 |
T |
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| Q |
269 |
ccccacgactttggtttagtgaggacttttttgaggagtgcgaggatctcga |
320 |
Q |
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|||||| |||||||||| |||| |||| |||||| |||| | |||||||||| |
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| T |
35749226 |
ccccacaactttggtttggtgaagactattttgacgagtacaaggatctcga |
35749175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 35739741 - 35739703
Alignment:
| Q |
156 |
aatcagtgacttaccatgcaatgtcattgacggcatcct |
194 |
Q |
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| T |
35739741 |
aatcagtgacttaccatgcaatgccattgacggcatcct |
35739703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 279
Target Start/End: Complemental strand, 40011283 - 40011146
Alignment:
| Q |
142 |
gatcaaattgatcgaatcagtgacttaccatgcaatgtcattgacggcatcctgtcacacttggacatcaaagacctagttgggactagtattttgtcta |
241 |
Q |
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||||| |||||||||||||||||||||||| | |||||||| || |||||||| ||||||| || | ||||||||| |||||||| || |||||| |
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| T |
40011283 |
gatcacattgatcgaatcagtgacttaccaagtaatgtcatcgatggcatcctagaacacttgaacgcccgagacctagtgaggactagtgttctgtcta |
40011184 |
T |
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| Q |
242 |
aacagtggaggtataagtggactaaagccccacgactt |
279 |
Q |
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| T |
40011183 |
gaaagtggaggtatatgtggattacagtcccacgactt |
40011146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 10862282 - 10862327
Alignment:
| Q |
149 |
ttgatcgaatcagtgacttaccatgcaatgtcattgacggcatcct |
194 |
Q |
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| T |
10862282 |
ttgattgaattagtgacttaccatgtaatgtcattgatggcatcct |
10862327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 262
Target Start/End: Complemental strand, 3733 - 3613
Alignment:
| Q |
142 |
gatcaaattgatcgaatcagtgacttaccatgcaatgtcattgacggcatcctgtcacacttggacatcaaagacctagttgggactagtattttgtcta |
241 |
Q |
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| T |
3733 |
gatcacattgatcgaatcagtgacttaccatgtaatgtcattgatggcatcctagaacgcttgaacattcaagagctagttagtaccagtcttctgtcta |
3634 |
T |
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| Q |
242 |
aacagtggaggtataagtgga |
262 |
Q |
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| T |
3633 |
gaaagtggaggtatatgtgga |
3613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 16865344 - 16865447
Alignment:
| Q |
149 |
ttgatcgaatcagtgacttaccatgcaatgtcattgacggcatcctgtcacacttggacatcaaagacctagttgggactagtattttgtctaaacagtg |
248 |
Q |
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| T |
16865344 |
ttgatcgaatcagtgacttaccaagtaatgtcattgatggcattctacaacacctgaacatccgagacctagctaggaccagtattctatctagaaagtg |
16865443 |
T |
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| Q |
249 |
gagg |
252 |
Q |
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|||| |
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| T |
16865444 |
gagg |
16865447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 128
Target Start/End: Original strand, 16865281 - 16865311
Alignment:
| Q |
98 |
ttgcttgaatttgtagttcacttatgactct |
128 |
Q |
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| T |
16865281 |
ttgcttgaatttgtagttcacttatgactct |
16865311 |
T |
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