View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982A_low_124 (Length: 329)
Name: NF11982A_low_124
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_124 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 36 - 323
Target Start/End: Complemental strand, 30316014 - 30315727
Alignment:
| Q |
36 |
tagtagcaagagaggtggcacaaaactcattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttatt |
135 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||| |
|
|
| T |
30316014 |
tagtagtaagagaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactctagttacaattacaagataatgccgttttatt |
30315915 |
T |
|
| Q |
136 |
ctttgctcactatgagctatagttccttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttc |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30315914 |
ctttgctcactatgagctatagttccttacagcatacatgcataacatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtc |
30315815 |
T |
|
| Q |
236 |
tctggcttcgaccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaac |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30315814 |
tctggcttcgaccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaac |
30315727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 36 - 323
Target Start/End: Complemental strand, 30305147 - 30304861
Alignment:
| Q |
36 |
tagtagcaagagaggtggcacaaaactcattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttatt |
135 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||| | |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30305147 |
tagtagcaagagaggtggctcaaaacttattcttgattcagttattcatagtagaaa-ggtggaactctagttatagttacaagataatgccgttttatt |
30305049 |
T |
|
| Q |
136 |
ctttgctcactatgagctatagttccttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttc |
235 |
Q |
| |
|
| | ||||| ||| |||||||| ||| || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30305048 |
catcgctcattattagctatagctccatatatcatacttgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtc |
30304949 |
T |
|
| Q |
236 |
tctggcttcgaccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaac |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30304948 |
tctggcttcgaccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaac |
30304861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 47 - 323
Target Start/End: Complemental strand, 30287462 - 30287193
Alignment:
| Q |
47 |
gaggtggcacaaaactcattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcact |
146 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||| |||||||||| ||||||||||||| |||| | |
|
|
| T |
30287462 |
gaggaggcacaaaacttattcttgattaatttattcatagtagaaa-ggaggaactctagtta------caagataatgccgttttattcttttctcatt |
30287370 |
T |
|
| Q |
147 |
atgagctatagttccttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttctctggcttcga |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30287369 |
atgagctatagttccttacagcatacatgcataacatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctctggcttcga |
30287270 |
T |
|
| Q |
247 |
ccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaac |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30287269 |
ccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaac |
30287193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 36 - 323
Target Start/End: Complemental strand, 30300349 - 30300069
Alignment:
| Q |
36 |
tagtagcaagagaggtggcacaaaactcattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttatt |
135 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||||||| || ||| ||||||||||||| || ||||||| || ||||||||| |
|
|
| T |
30300349 |
tagtagtaagagaggtggcacaaaacttattcttgattaatttattcatggtggaaa-ggtggaactctagata------caagatattgccgttttatt |
30300257 |
T |
|
| Q |
136 |
ctttgctcactatgagctatagttccttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttc |
235 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| || |
|
|
| T |
30300256 |
ctctgctcactatgagctatgactccttacagcatacaagcataatatttgatcactcattaaaatactcccaaaattgaagatataagctccctttgtc |
30300157 |
T |
|
| Q |
236 |
tctggcttcgaccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaac |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30300156 |
tctggcttcgaccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaac |
30300069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 47 - 323
Target Start/End: Complemental strand, 30292485 - 30292227
Alignment:
| Q |
47 |
gaggtggcacaaaactcattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcact |
146 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||||| ||||||||| |
|
|
| T |
30292485 |
gaggtggcacaaaacttgttcttgattaatttattcatagtaggaaag-tggaactctagttatagttacaagctaatgccgttttattcattgctcact |
30292387 |
T |
|
| Q |
147 |
atgagctatagttccttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttctctggcttcga |
246 |
Q |
| |
|
||||||| || |||||||| |||||||| |||||||| | |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30292386 |
atgagct---------tagagcatacaagcataataag--------cattaaaacgttcccgaaattgaagaaataggctccctttttctctggcttcga |
30292304 |
T |
|
| Q |
247 |
ccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaac |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30292303 |
ccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaac |
30292227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 259 - 323
Target Start/End: Complemental strand, 46810582 - 46810518
Alignment:
| Q |
259 |
tccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaac |
323 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| || ||||||| |||||| ||||| |
|
|
| T |
46810582 |
tccctttgttgaggttgagcatttgcaaagtaagattgtctttggttctttattagcctatcaac |
46810518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University