View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_126 (Length: 328)
Name: NF11982A_low_126
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_126 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 324
Target Start/End: Complemental strand, 32534495 - 32534181
Alignment:
| Q |
10 |
attatactactaaagacatcattgtttctcaagtcagcattagtcattataaaatactacagtatttttatcaaacaattgtgctatcccagtactattg |
109 |
Q |
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| T |
32534495 |
attatactactaaagacatcattgtttcttaagtcagcattagtcattatataatactacagtatttttatcaaacaattgtgctatcccagtactattg |
32534396 |
T |
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| Q |
110 |
atactgaaattcaagcatgattgaattgtgtaggttagaaggatccaatataacatttgctagctattttggagtgtctaggctgttagtcatgccctta |
209 |
Q |
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| T |
32534395 |
atactgaaattcaagcatgattgaattgtgtaggttagaaggatccaatataatatttgctagctgttttggagtgtctaggctgttagtcatgccctta |
32534296 |
T |
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| Q |
210 |
tttgcgagggttactagtccctgttggttaatgaatgttaactcaagcctttagacttcatttctcaccacgcgcctgcttttacttctgtgagggtcat |
309 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
32534295 |
tttgtgagggttactagtccctgttggttaatgaatgttaactcaagcctttagacttcatttctcaccacgcgcttgctcttacttctgtgagggtcat |
32534196 |
T |
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| Q |
310 |
ctcgtgcattagttg |
324 |
Q |
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| T |
32534195 |
ctcgtgcattagttg |
32534181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 272
Target Start/End: Complemental strand, 32549534 - 32549445
Alignment:
| Q |
183 |
gtgtctaggctgttagtcatgcccttatttgcgagggttactagtccctgttggttaatgaatgttaactcaagcctttagacttcattt |
272 |
Q |
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||||||||||||||||| ||||||| ||| || | | | | |||| |||||| ||||||||||||||||||| ||||||| ||||||| |
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| T |
32549534 |
gtgtctaggctgttagtagtgccctttattgtgacgctcatttgtccttgttggctaatgaatgttaactcaagtctttagatttcattt |
32549445 |
T |
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