View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982A_low_136 (Length: 322)
Name: NF11982A_low_136
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_136 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 7 - 322
Target Start/End: Original strand, 41792983 - 41793298
Alignment:
| Q |
7 |
gtagatacgaatcccttggaagaatcctaatttgtgtctttgtctcaattctcatctgttcaattatttttccaccttttcctagcaatgacccaacatg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41792983 |
gtagatacgaatcccttggaagaatcctaatttgtgtctttgtctcaattctcatctgttcaattatttttccaccttttcctagcaatgacccaacatg |
41793082 |
T |
|
| Q |
107 |
cattttcgaaacaaccaacctactagaaacacgcttcccaccaccacctcttccgccgccgtagtcctcctcatcctcaaaccccggatcgttctccaac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41793083 |
cattttcgaaacaaccaacctactagaaacacgcttcccaccaccacctcttccgccgccgtagtcctcctcatcctcaaaccccggatcgttctccaac |
41793182 |
T |
|
| Q |
207 |
agcctctcatgaatgagaagcaacgcctcctgcgccggcgaaaactgtggcattctaccatccggatcacggcggcgcgtgtcagaaatctcgataatcc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41793183 |
agcctctcatgaatgagaagcaacgcctcctgcgccggcgaaaactgtggcattctaccatccggatcacggcggcgcgtgtcagaaatctcgataatcc |
41793282 |
T |
|
| Q |
307 |
tctcctcatctccagc |
322 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
41793283 |
tctcctcatctccagc |
41793298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University