View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982A_low_139 (Length: 320)

Name: NF11982A_low_139
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982A_low_139
NF11982A_low_139
[»] chr1 (16 HSPs)
chr1 (11-314)||(13244625-13244928)
chr1 (11-210)||(12963979-12964178)
chr1 (21-210)||(13271475-13271664)
chr1 (11-220)||(30368212-30368421)
chr1 (11-288)||(13100812-13101088)
chr1 (11-295)||(13080969-13081253)
chr1 (11-220)||(13094278-13094487)
chr1 (25-295)||(13085911-13086181)
chr1 (11-220)||(13070280-13070489)
chr1 (11-290)||(13007009-13007288)
chr1 (11-220)||(13129707-13129916)
chr1 (11-290)||(13204268-13204547)
chr1 (11-220)||(13161400-13161609)
chr1 (11-210)||(19279272-19279471)
chr1 (11-294)||(13065317-13065600)
chr1 (152-210)||(13010662-13010720)
[»] chr7 (1 HSPs)
chr7 (11-166)||(12164206-12164361)
[»] chr6 (3 HSPs)
chr6 (11-95)||(377574-377658)
chr6 (12-95)||(341859-341942)
chr6 (89-180)||(31380253-31380344)


Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 314
Target Start/End: Original strand, 13244625 - 13244928
Alignment:
Q  11 atggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgca 110  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||| ||| || |||| ||||||||||||||||||||||||||||||    
T  13244625 atggggagatgattgcttggaatttaagcctgaaagatggatatcagctagaggagggattataaatgtaccgtcttacaagttcatagctttcaatgca 13244724  T
Q  111 ggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtc 210  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13244725 ggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtc 13244824  T
Q  211 gccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatataacaaagttgcaagtgt 310  Q
     ||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  13244825 accctgtaacgctgagaacttctattgtcgttcgcatgaaacacggcttaaaggtcgaagtcagtaaaagatgcatttgatataacaaagttgtaagtgt 13244924  T
Q  311 gatg 314  Q
    ||||    
T  13244925 gatg 13244928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 12963979 - 12964178
Alignment:
Q  11 atggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgca 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||||||||  ||| |||| || || ||||| ||||||||||| |||||||||    
T  12963979 atggggagaagattgcttggaatttaagcctgaaagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgca 12964078  T
Q  111 ggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtc 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  | |||| |||||||||| |||| | |||||||||||||    
T  12964079 ggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgctgctaatgtgttgtggaagtttcacatagaagtggtggaaggtc 12964178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 13271664 - 13271475
Alignment:
Q  21 gattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaa 120  Q
    ||||||||||| ||||||||||| ||||||||||| | || ||||   ||| ||||||| || ||||||||||||||||| |||||||||||||||||||    
T  13271664 gattgcttggagtttaagcctgagagatggatatcagataaaggacaaattatacatgtaccatcttacaagttcatagcattcaatgcaggtcctagaa 13271565  T
Q  121 gttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtc 210  Q
    | ||| |||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| |||||| |||||||||||||    
T  13271564 gctgtcttgggaaagatattagctttattcaaatgaaaatggttgcagcttctgtattatggaagtttcacatacatgtggtggaaggtc 13271475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 30368212 - 30368421
Alignment:
Q  11 atggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgca 110  Q
    |||||||||||||||| |||||||||||||||| |||||| |||| |  ||||||  |||| ||||||| || |||||||||||||||||||||||| ||    
T  30368212 atggggagaagattgcatggaatttaagcctgagagatgggtatcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaataca 30368311  T
Q  111 ggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtc 210  Q
    || |||||||||||||| || |||||| |||| || ||||||||||| |||||||||||| | |||||||||||||||| ||||||||| ||||||||||    
T  30368312 ggacctagaagttgtatgggtaaagatcttagtttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtc 30368411  T
Q  211 gccctgtaac 220  Q
     |||||||||    
T  30368412 accctgtaac 30368421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 13101088 - 13100812
Alignment:
Q  11 atggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgca 110  Q
    |||||||||||| ||| |||||||||||||||| |||||| | || |  ||||||  |||| ||||||| || |||||||||||||||||||||||| ||    
T  13101088 atggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaat-ca 13100990  T
Q  111 ggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtc 210  Q
    || |||||||||||||| || || |||||||||||  |||||||||| ||||| |||||| ||||||||  |||||||| ||||||||||||||||||||    
T  13100989 ggacctagaagttgtatgggtaaggatattagcttcattcaaatgaagatggtcgcagctgctttgttaccgaagtttcacatacaggtggtggaaggtc 13100890  T
Q  211 gccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcattt 288  Q
     |||| |||| | ||    |||| |||  |||| ||||||||| ||||| |||||| || ||| ||||||||||||||    
T  13100889 accctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcattt 13100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 11 - 295
Target Start/End: Original strand, 13080969 - 13081253
Alignment:
Q  11 atggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgca 110  Q
    ||||||||| ||||||||||| ||||||||||| ||||||||||| | |||||||   ||| |||| || |||||||| ||||||||||| || ||||||    
T  13080969 atggggagaggattgcttggagtttaagcctgagagatggatatcagatagaggacaaattatacaagtgccgtcttataagttcatagcgtttaatgca 13081068  T
Q  111 ggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtc 210  Q
    ||||| ||||| ||| |||||||||||||||| ||| ||||||||||||||||||||||| |  | ||||  ||||||| ||| ||||||||||||||||    
T  13081069 ggtccaagaagctgtcttgggaaagatattagttttcttcaaatgaaaatggttgcagctgcagttttatttaagtttcacattcaggtggtggaaggtc 13081168  T
Q  211 gccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatataa 295  Q
     | |  |||  |  ||   |||||||  |||||||||| |||| ||||| |||||| ||||  ||||||||||||||||||||||    
T  13081169 actcaataattcctagggtttctattctccttcgcatggaacatggctttaaggtcaaaattcgtaaaagatgcatttgatataa 13081253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 13094487 - 13094278
Alignment:
Q  11 atggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgca 110  Q
    |||||||||||| ||| |||||||||||||||| ||||||||||| |  || ||||  ||| ||||||| || |||||||||||||||||||||||  ||    
T  13094487 atggggagaagactgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaacaca 13094388  T
Q  111 ggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtc 210  Q
    || || |||| |||||| || ||||||||||| ||  |||||||||| ||||| |||||| |||||||| ||||||||| ||||||||||||||||||||    
T  13094387 ggacccagaatttgtataggtaaagatattagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtc 13094288  T
Q  211 gccctgtaac 220  Q
     |||||||||    
T  13094287 accctgtaac 13094278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 25 - 295
Target Start/End: Complemental strand, 13086181 - 13085911
Alignment:
Q  25 gcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttg 124  Q
    |||| ||||||||||| || ||||||||||| | || ||||   ||| | ||||| || |||| |||||||||||| || |||||||||||| |||||||    
T  13086181 gcttcgaatttaagcccgagagatggatatcagataaaggacatattttgcatgtaccatcttgcaagttcatagcatttaatgcaggtcctcgaagttg 13086082  T
Q  125 tattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcgccctgtaacgctg 224  Q
    | ||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||| |||||| || ||||||||||   ||||||| |      
T  13086081 tcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatgttatggaagtttcacatacaagttgtggaaggtcattctgtaactcca 13085982  T
Q  225 agaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatataa 295  Q
    |||  ||||||||  || |||||| |||| || || || ||| || | ||||||||||| |||||||||||    
T  13085981 agagtttctattgttctccgcatggaacatggattcaaagtcaaagttagtaaaagatgaatttgatataa 13085911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 13070280 - 13070489
Alignment:
Q  11 atggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgca 110  Q
    |||||||||||| ||| |||||||||||||||| |||||| |||| |  | ||||  |||| ||||||| || |||||||||||||||||||||||| ||    
T  13070280 atggggagaagactgcatggaatttaagcctgagagatgggtatcagagacaggacacattatacatgttccatcttacaagttcatagctttcaataca 13070379  T
Q  111 ggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtc 210  Q
    ||||| ||||||||| | || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  |||||||| ||||||||||||||||||||    
T  13070380 ggtccgagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtc 13070479  T
Q  211 gccctgtaac 220  Q
     |||||||||    
T  13070480 accctgtaac 13070489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 290
Target Start/End: Complemental strand, 13007288 - 13007009
Alignment:
Q  11 atggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgca 110  Q
    |||||||||||| ||| |||||||||||||||| |||||| | || |  ||||||  |||| ||||||| || |||||||||||||||||||||||| ||    
T  13007288 atggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaataca 13007189  T
Q  111 ggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtc 210  Q
    ||||||||||||||||| || || |||||||||||  |||||||||| ||||| |||||  ||||||||   ||||||| |||| ||||||||| |||||    
T  13007188 ggtcctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgcagcagctttgttaccaaagtttcacataaaggtggtggcaggtc 13007089  T
Q  211 gccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttga 290  Q
     |||| |||| | ||    |||| |||  |||| ||||||||| ||||| |||||  || ||| ||||||||||||||||    
T  13007088 accctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggttaaagtcactaaaagatgcatttga 13007009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 13129916 - 13129707
Alignment:
Q  11 atggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgca 110  Q
    |||||||||||| ||| |||||||||||||||| ||||||||||| |  || ||||  ||| ||||||| || |||||||||||| ||||||||||  ||    
T  13129916 atggggagaagactgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacaca 13129817  T
Q  111 ggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtc 210  Q
    || || |||| |||||| || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  |||||||| ||||||||||||||||||||    
T  13129816 ggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtc 13129717  T
Q  211 gccctgtaac 220  Q
     |||||||||    
T  13129716 accctgtaac 13129707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 11 - 290
Target Start/End: Complemental strand, 13204547 - 13204268
Alignment:
Q  11 atggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgca 110  Q
    |||||||||||| ||| |||||||||||||||| |||||| |||| |  | ||||  |||| ||||||| || |||||||||||||||||||||||| ||    
T  13204547 atggggagaagactgcatggaatttaagcctgagagatgggtatcagagacaggacacattatacatgtaccatcttacaagttcatagctttcaataca 13204448  T
Q  111 ggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtc 210  Q
    ||||||||||||||| | || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  ||| |||| |||| || | ||||||||||    
T  13204447 ggtcctagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaattttcacataaagatagtggaaggtc 13204348  T
Q  211 gccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttga 290  Q
     ||||||||| |  |  | |||| |||  |||| ||||||| | || ||||||||  || ||| ||||||||||||||||    
T  13204347 accctgtaaccccaaagatttcttttgttcttcacatgaaatatggtttaaaggttaaagtcactaaaagatgcatttga 13204268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 13161609 - 13161400
Alignment:
Q  11 atggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgca 110  Q
    |||||| ||||| ||| |||||||||||||||| ||||||||||| |  || ||||  ||| ||||||| || ||||||||||||||| |||||||  ||    
T  13161609 atggggggaagactgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccttcttacaagttcatatctttcaacaca 13161510  T
Q  111 ggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtc 210  Q
    || || |||| |||||| || |||||| |||| ||  |||||||||| ||||| |||||| |||||||| ||||||||| ||||||||||||||||||||    
T  13161509 ggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtc 13161410  T
Q  211 gccctgtaac 220  Q
     || ||||||    
T  13161409 accttgtaac 13161400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 19279272 - 19279471
Alignment:
Q  11 atggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgca 110  Q
    |||||| || |||||| | ||||||  |||||| ||||||||||||| |||||||   ||| ||||||| || || |||||||||||||| || ||||||    
T  19279272 atggggtgatgattgcctagaatttcggcctgagagatggatatcggatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgca 19279371  T
Q  111 ggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtc 210  Q
    ||||| ||||| ||| | || ||||||||||  ||  ||||||||||||||||||||||| || | ||||||||||||||||||||||| ||||||||||    
T  19279372 ggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaatggttgcagctgctgtattatggaagtttcgcatacaggtcgtggaaggtc 19279471  T

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Target: chr1; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 294
Target Start/End: Original strand, 13065317 - 13065600
Alignment:
Q  11 atggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgca 110  Q
    |||||||||||| ||| |||||||||||||||| |||||||||||    || |||   ||| ||||||| ||||||||||||||||||||||||||||||    
T  13065317 atggggagaagactgcatggaatttaagcctgagagatggatatcaaaaagcggacaaattatacatgtaccgtcttacaagttcatagctttcaatgca 13065416  T
Q  111 ggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtc 210  Q
    || || ||||||||| | || |||||||| | ||| ||| ||||||| |||| ||| ||  || |  ||||||||||| |||||||  | ||||| ||||    
T  13065417 gggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatggctgccgcggctatactatggaagttttgcatacatttagtggatggtc 13065516  T
Q  211 gccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatata 294  Q
      |||||||| |  ||   ||||||| ||||  | |||||||| ||||| ||||||  | ||| ||||||||||||||||||||    
T  13065517 atcctgtaactccaaggctttctattaccctcggaatgaaacatggcttgaaggtcatagtcactaaaagatgcatttgatata 13065600  T

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Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 13010720 - 13010662
Alignment:
Q  152 aatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtc 210  Q
    |||||| ||||| ||||||  |||||||||||| ||||||||||| |||||||||||||    
T  13010720 aatgaagatggtcgcagctgatttgttatggaaatttcgcatacaagtggtggaaggtc 13010662  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 12164361 - 12164206
Alignment:
Q  11 atggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgca 110  Q
    |||||||||||||||||||||||||||||| || || ||||| ||    | |||||| || ||  |||| || |||||||||||||| ||||| |||||     
T  12164361 atggggagaagattgcttggaatttaagccagagaggtggatttctcaaaaaggagggatagtttatgttccttcttacaagttcattgcttttaatgct 12164262  T
Q  111 ggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgc 166  Q
    || || || |||||| | || || ||||| |||||  || | ||||||||||||||    
T  12164261 ggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggttgc 12164206  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 377574 - 377658
Alignment:
Q  11 atggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttc 95  Q
    ||||||||||||||||||||| || ||||| || ||||||||||| |  |||||  ||||||| ||||  |||||||| ||||||    
T  377574 atggggagaagattgcttggagttcaagccagagagatggatatctgagagaggtagcattgttcatgaaccgtcttataagttc 377658  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 341859 - 341942
Alignment:
Q  12 tggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttc 95  Q
    |||||| ||||||||||||| |||||||| || || ||||| || |  ||||||||||||||  |||  |||||||||||||||    
T  341859 tggggaaaagattgcttggagtttaagccagagaggtggatttctgagagaggaggcattgtttatgcgccgtcttacaagttc 341942  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 31380253 - 31380344
Alignment:
Q  89 caagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttat 180  Q
    |||||||||| |||||||| |||| ||  ||||||||||||| |||||| |||| ||  ||||||| || |||  ||| |||||||||||||    
T  31380253 caagttcatatctttcaatacaggacccggaagttgtattggtaaagatcttagtttcattcaaattaagatgtctgcggcttctttgttat 31380344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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